Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 4.8e-180 634.4 326 100.0
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 7.6e-178 627.1 326 98.8
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 4.9e-177 624.4 326 97.9
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 7.6e-162 573.9 326 89.6
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 9.7e-157 557.0 326 86.2
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 1.6e-156 556.2 326 85.9
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 8.2e-148 527.3 321 83.8
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 3.5e-130 468.8 328 73.8
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 1.3e-129 466.8 327 73.7
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 8.5e-129 464.2 328 72.9
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 2.5e-128 462.6 328 72.6
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 9.4e-128 460.7 330 73.0
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 9.4e-128 460.7 327 73.4
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 1.2e-127 460.3 329 72.0
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 2.3e-126 456.1 345 71.6
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 3.0e-126 455.7 327 73.1
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 1.5e-125 453.4 331 71.0
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.5e-125 453.4 326 72.4
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 4.4e-125 451.8 330 69.1
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 9.8e-125 450.7 324 72.8
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 6.3e-124 448.0 327 69.1
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 2.4e-123 446.0 327 69.1
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 3.1e-123 445.7 327 71.3
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 4.1e-123 445.3 329 69.9
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 4.1e-123 445.3 329 69.0
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 4.1e-123 445.3 326 69.9
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 7.0e-123 444.5 327 69.1
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 7.0e-123 444.5 326 69.6
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 1.2e-122 443.7 353 67.4
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 1.2e-122 443.7 329 70.5
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 1.2e-122 443.7 327 68.5
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 2.0e-122 443.0 326 70.2
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 4.5e-122 441.8 293 77.5
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 5.9e-122 441.4 330 70.3
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 1.7e-121 439.9 327 69.1
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 2.3e-121 439.5 359 66.6
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 3.8e-121 438.7 329 69.6
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 6.5e-121 438.0 329 68.7
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 1.1e-120 437.2 327 68.8
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 1.5e-120 436.8 329 67.2
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 1.5e-120 436.8 328 69.2
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 1.9e-120 436.4 328 66.5
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 1.9e-120 436.4 327 69.4
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 3.2e-120 435.6 322 72.0
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 9.5e-120 434.1 328 67.1
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 9.5e-120 434.1 327 67.9
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 1.2e-119 433.7 327 69.1
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 2.1e-119 433.0 332 66.9
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 2.1e-119 433.0 329 68.1
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 2.1e-119 433.0 326 67.8
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 2.8e-119 432.6 329 68.7
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 2.8e-119 432.6 326 68.4
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 3.6e-119 432.2 327 66.7
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 4.7e-119 431.8 362 64.9
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 8.0e-119 431.0 329 69.0
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 8.0e-119 431.0 329 66.6
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.0e-118 430.6 329 69.3
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 1.0e-118 430.6 331 66.8
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 5.2e-118 428.3 328 67.1
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 5.2e-118 428.3 329 68.1
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 5.2e-118 428.3 329 68.4
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 6.8e-118 427.9 328 65.9
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 8.8e-118 427.6 325 67.7
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 1.5e-117 426.8 332 66.3
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.0e-117 426.4 326 66.0
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 4.4e-117 425.2 326 66.3
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 1.3e-116 423.7 328 65.9
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 2.2e-116 422.9 325 67.4
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 8.3e-116 421.0 328 67.1
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 7.0e-115 417.9 328 66.5
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 7.0e-115 417.9 328 68.3
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 9.2e-115 417.5 331 65.6
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 1.2e-114 417.2 328 64.6
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 2.0e-114 416.4 326 69.0
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.7e-114 416.0 328 66.2
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 4.5e-114 415.2 325 65.2
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 7.8e-114 414.5 325 65.2
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 7.8e-114 414.5 327 67.6
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 2.9e-113 412.5 329 66.6
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 3.8e-113 412.1 321 66.4
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 1.9e-112 409.8 325 64.9
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 3.3e-112 409.1 398 57.0
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 3.3e-112 409.1 276 75.4
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 1.2e-111 407.1 327 64.2
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.2e-111 407.1 327 64.8
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 1.6e-111 406.8 327 63.6
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.1e-111 406.4 326 63.8
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 4.7e-111 405.2 325 64.0
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.0e-110 404.1 326 62.3
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 1.4e-110 403.7 325 63.7
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 1.8e-110 403.3 325 64.0
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 2.3e-110 402.9 326 65.3
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 4.4e-109 398.7 326 62.9
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 7.5e-109 397.9 326 63.8
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 9.8e-109 397.5 336 60.7
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 2.0e-106 389.8 326 61.0
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 4.6e-106 388.7 326 63.2
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 3.9e-105 385.6 326 63.2
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 1.1e-104 384.0 325 60.3
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 9.5e-104 380.9 328 62.8
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 2.8e-103 379.4 323 62.2
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 2.8e-103 379.4 271 72.3
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 7.5e-101 371.3 322 59.3
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 5.4e-99 365.2 324 60.2
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 1.3e-97 360.5 331 59.2
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 4.4e-93 345.5 327 57.5
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 2.1e-87 326.6 326 55.5
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 2.2e-84 316.6 328 54.0
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 9.2e-83 311.2 322 54.7
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 9.2e-83 311.2 316 52.8
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 3.5e-82 309.3 327 56.0
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 4.6e-82 308.9 276 61.2
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 7.8e-82 308.1 320 50.6
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 2.3e-81 306.6 323 54.5
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 3.0e-81 306.2 322 52.5
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 4.4e-77 292.4 316 52.2
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 2.9e-76 289.7 320 48.1
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 1.9e-72 276.9 177 80.2
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 1.9e-67 260.4 197 67.5
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 9.6e-64 248.1 285 44.6
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.1e-62 244.6 326 45.7
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 2.2e-60 236.9 214 57.9
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 5.5e-59 232.3 276 49.6
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.2e-58 231.1 195 62.6
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 1.0e-57 228.0 186 64.0
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 5.6e-56 222.2 292 43.5
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 6.2e-55 218.8 157 67.5
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 4.9e-52 209.1 180 61.7
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 1.4e-51 207.6 181 58.6
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.0e-50 202.2 328 40.2
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 6.7e-49 198.7 143 67.1
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 1.8e-46 190.7 133 71.4
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 1.2e-45 188.0 268 40.3
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 7.6e-45 185.3 131 69.5
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 1.1e-43 181.4 139 65.5
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 8.8e-41 171.8 131 67.9
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 4.3e-40 169.5 150 61.3
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 2.8e-39 166.8 282 37.9
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 1.8e-38 164.1 97 76.3
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 1.8e-38 164.1 128 68.8
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 3.1e-38 163.3 292 33.9
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 1.4e-35 154.5 119 63.9
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 1.0e-33 148.3 140 55.7
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 1.4e-33 147.9 196 42.9
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 3.1e-30 136.7 153 45.8
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 3.1e-30 136.7 178 42.1
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.0e-28 131.7 145 49.0
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.4e-27 127.9 142 46.5
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.5e-27 127.1 127 48.8
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 2.7e-26 123.6 80 67.5
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 3.0e-25 120.2 126 49.2
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 2.0e-21 107.5 114 50.9
QL09p052305 Quercus lobata HOM05D004465 ORTHO05D005450 6.1e-18 95.9 194 36.6
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 4.0e-17 93.2 68 69.1
BcaC07g36969 Brassica carinata HOM05D004465 ORTHO05D005450 3.5e-13 80.1 78 56.4
C08p00550 Brassica napus HOM05D004465 ORTHO05D005450 3.5e-13 80.1 78 56.4
BolC8t46855H Brassica oleracea HOM05D004465 ORTHO05D005450 3.8e-12 76.6 77 54.5
QL09p051599 Quercus lobata HOM05D004465 ORTHO05D005450 2.8e-07 60.5 60 55.0
BraA08t35634Z Brassica rapa HOM05D004465 ORTHO05D005450 4.8e-07 59.7 120 40.8
SalBow2G0531 Salvia bowleyana HOM05D004465 ORTHO05D351996 2.4e-06 57.4 33 78.8


User provided reference genes

Program Settings