Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc08g036610.3 Solanum lycopersicum HOM05D001363 ORTHO05D051057 1.2e-52 209.5 106 100.0
Sopen08g011300 Solanum pennellii HOM05D001363 ORTHO05D051057 1.5e-34 149.4 76 97.4
SEGI_15380 Sequoiadendron giganteum HOM05D001363 ORTHO05D002212 1.6e-15 86.3 70 64.3
Glyma.10G243200 Glycine max HOM05D001363 ORTHO05D002212 1.7e-14 82.8 103 48.5
CAN.G1435.9 Capsicum annuum HOM05D001363 ORTHO05D002212 8.6e-14 80.5 115 46.1
Atru.chr4.2334 Acer truncatum HOM05D001363 ORTHO05D002212 3.3e-13 78.6 116 43.1
Ciclev10006682m.g Citrus clementina HOM05D001363 ORTHO05D002212 3.3e-13 78.6 116 44.0
Gohir.D09G221800 Gossypium hirsutum HOM05D001363 ORTHO05D002212 3.3e-13 78.6 116 44.0
Gorai.006G243000 Gossypium raimondii HOM05D001363 ORTHO05D002212 3.3e-13 78.6 116 44.0
Solyc09g082790.4 Solanum lycopersicum HOM05D001363 ORTHO05D002212 3.3e-13 78.6 116 44.8
Sopen09g031640 Solanum pennellii HOM05D001363 ORTHO05D002212 3.3e-13 78.6 116 44.8
PGSC0003DMG400030167 Solanum tuberosum HOM05D001363 ORTHO05D002212 3.3e-13 78.6 116 44.8
THA.LOC104804919 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 3.3e-13 78.6 115 44.3
GSVIVG01018051001 Vitis vinifera HOM05D001363 ORTHO05D002212 3.3e-13 78.6 115 45.2
Duzib151G0676 Durio zibethinus HOM05D001363 ORTHO05D002212 4.3e-13 78.2 116 44.0
THA.LOC104808576 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 4.3e-13 78.2 116 44.0
arahy.Tifrunner.gnm1.ann1.QPK5VU Arachis hypogaea HOM05D001363 ORTHO05D002212 5.6e-13 77.8 117 42.7
SGA_v2.0_scaffold353G49716 Striga asiatica HOM05D001363 ORTHO05D002212 5.6e-13 77.8 115 45.2
THA.LOC104803046 Tarenaya hassleriana HOM05D001363 ORTHO05D002212 5.6e-13 77.8 116 44.0
Gohir.A02G034500 Gossypium hirsutum HOM05D001363 ORTHO05D002212 7.3e-13 77.4 116 43.1
Gorai.005G045700 Gossypium raimondii HOM05D001363 ORTHO05D002212 7.3e-13 77.4 116 43.1
MD16G1200300 Malus domestica HOM05D001363 ORTHO05D002212 7.3e-13 77.4 115 41.7
Nitab4.5_0007166g0010 Nicotiana tabacum HOM05D001363 ORTHO05D002212 7.3e-13 77.4 115 45.2
arahy.Tifrunner.gnm1.ann1.MX9883 Arachis hypogaea HOM05D001363 ORTHO05D002212 9.5e-13 77.0 115 43.5
SGA_v2.0_scaffold191G40421 Striga asiatica HOM05D001363 ORTHO05D002212 9.5e-13 77.0 115 44.3
TAR636G1108 Trochodendron aralioides HOM05D001363 ORTHO05D002212 9.5e-13 77.0 116 44.0
vmacro15381 Vaccinium macrocarpon HOM05D001363 ORTHO05D002212 9.5e-13 77.0 115 44.3
CARHR050050 Cardamine hirsuta HOM05D001363 ORTHO05D002212 1.6e-12 76.3 98 48.0
AUR62005320 Chenopodium quinoa HOM05D001363 ORTHO05D002212 1.6e-12 76.3 115 44.3
Duzib212G0488 Durio zibethinus HOM05D001363 ORTHO05D002212 1.6e-12 76.3 116 43.1
Lj5g0010655 Lotus japonicus HOM05D001363 ORTHO05D002212 1.6e-12 76.3 116 42.2
Nn1g02467 Nelumbo nucifera HOM05D001363 ORTHO05D002212 1.6e-12 76.3 116 43.1
QL06p000836 Quercus lobata HOM05D001363 ORTHO05D002212 1.6e-12 76.3 116 44.0
RcHm_v2.0_Chr4g0391091 Rosa chinensis HOM05D001363 ORTHO05D002212 1.6e-12 76.3 117 42.7
Thecc.04G239600 Theobroma cacao HOM05D001363 ORTHO05D002212 1.6e-12 76.3 116 43.1
Manes.03G172700 Manihot esculenta HOM05D001363 ORTHO05D002212 2.1e-12 75.9 116 42.2
Nitab4.5_0002652g0020 Nicotiana tabacum HOM05D001363 ORTHO05D002212 2.1e-12 75.9 115 44.3
SalBow2G1003 Salvia bowleyana HOM05D001363 ORTHO05D002212 2.1e-12 75.9 115 43.5
Lj6A646T83 Lonicera japonica HOM05D001363 ORTHO05D002212 2.8e-12 75.5 116 44.0
RcHm_v2.0_Chr4g0393481 Rosa chinensis HOM05D001363 ORTHO05D002212 2.8e-12 75.5 116 42.2
Sc13g0004780 Simmondsia chinensis HOM05D001363 ORTHO05D002212 2.8e-12 75.5 115 43.5
Atru.chr4.2332 Acer truncatum HOM05D001363 ORTHO05D002212 3.6e-12 75.1 116 41.4
CSS0014402 Camellia sinensis var. sinensis HOM05D001363 ORTHO05D002212 3.6e-12 75.1 115 43.5
AUR62013971 Chenopodium quinoa HOM05D001363 ORTHO05D002212 3.6e-12 75.1 115 44.3
Phvul.007G062500 Phaseolus vulgaris HOM05D001363 ORTHO05D002212 3.6e-12 75.1 116 42.2
A01p32310 Brassica napus HOM05D001363 ORTHO05D002212 4.7e-12 74.7 112 42.9
BraA01t03357Z Brassica rapa HOM05D001363 ORTHO05D002212 4.7e-12 74.7 112 42.9
FvH4_4g03620 Fragaria vesca HOM05D001363 ORTHO05D002212 4.7e-12 74.7 115 41.7
FAN12G0492 Fragaria x ananassa HOM05D001363 ORTHO05D002212 4.7e-12 74.7 115 41.7
FAN17G1407 Fragaria x ananassa HOM05D001363 ORTHO05D002212 4.7e-12 74.7 115 41.7
FAN22G0300 Fragaria x ananassa HOM05D001363 ORTHO05D002212 4.7e-12 74.7 115 41.7
PGR142G0038 Punica granatum HOM05D001363 ORTHO05D002212 4.7e-12 74.7 116 43.1
VMungo0720G0234 Vigna mungo HOM05D001363 ORTHO05D002212 4.7e-12 74.7 115 42.6
ECA240G4262 Erigeron canadensis HOM05D001363 ORTHO05D002212 6.2e-12 74.3 111 44.1
Migut.G00388 Erythranthe guttata HOM05D001363 ORTHO05D002212 6.2e-12 74.3 115 43.5
Potri.008G158500 Populus trichocarpa HOM05D001363 ORTHO05D002212 6.2e-12 74.3 116 42.2
AT3G22880 Arabidopsis thaliana HOM05D001363 ORTHO05D002212 8.1e-12 73.9 118 43.2
BcaC09g49214 Brassica carinata HOM05D001363 ORTHO05D002212 8.1e-12 73.9 111 43.2
C01p41330 Brassica napus HOM05D001363 ORTHO05D002212 8.1e-12 73.9 111 43.2
BolC1t04092H Brassica oleracea HOM05D001363 ORTHO05D002212 8.1e-12 73.9 111 43.2
Ca_10819_v3 Cicer arietinum L. HOM05D001363 ORTHO05D002212 8.1e-12 73.9 117 43.6
Cc03_g04350 Coffea canephora HOM05D001363 ORTHO05D002212 8.1e-12 73.9 116 43.1
MELO3C006496.2 Cucumis melo HOM05D001363 ORTHO05D002212 8.1e-12 73.9 115 43.5
CsaV3_3G012860 Cucumis sativus L. HOM05D001363 ORTHO05D002212 8.1e-12 73.9 115 43.5
Dinv44580 Davidia involucrata HOM05D001363 ORTHO05D002212 8.1e-12 73.9 116 42.2
Lsat_1_v5_gn_7_66001 Lactuca sativa HOM05D001363 ORTHO05D002212 8.1e-12 73.9 136 41.2
Prupe.1G022500 Prunus persica HOM05D001363 ORTHO05D002212 8.1e-12 73.9 116 40.5
RcHm_v2.0_Chr4g0392991 Rosa chinensis HOM05D001363 ORTHO05D002212 8.1e-12 73.9 116 41.4
Carub.0003s2301 Capsella rubella HOM05D001363 ORTHO05D002212 1.1e-11 73.6 111 43.2
Cpa.g.sc44.128 Carica papaya HOM05D001363 ORTHO05D002212 1.1e-11 73.6 116 42.2
CDE10G0279 Ceratophyllum demersum HOM05D001363 ORTHO05D002212 1.1e-11 73.6 117 41.0
Medtr1g102670 Medicago truncatula HOM05D001363 ORTHO05D002212 1.1e-11 73.6 115 42.6
Psat6g203440 Pisum sativum HOM05D001363 ORTHO05D002212 1.1e-11 73.6 115 42.6
unitig_32.g11721 Utricularia gibba HOM05D001363 ORTHO05D002212 1.1e-11 73.6 115 42.6
BcaB03g14645 Brassica carinata HOM05D001363 ORTHO05D002212 1.4e-11 73.2 111 43.2
COL.COLO4_21574 Corchorus olitorius HOM05D001363 ORTHO05D002212 1.4e-11 73.2 116 41.4
DCAR_002364 Daucus carota HOM05D001363 ORTHO05D002212 1.4e-11 73.2 116 41.4
Thhalv10021068m.g Eutrema salsugineum HOM05D001363 ORTHO05D002212 1.4e-11 73.2 111 43.2
Sp3g20580 Schrenkiella parvula HOM05D001363 ORTHO05D002212 1.4e-11 73.2 111 43.2
TWI53G1709 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 1.4e-11 73.2 116 42.2
Ca_28386_v3 Cicer arietinum L. HOM05D001363 ORTHO05D002212 1.8e-11 72.8 111 43.2
PSO210G1487 Papaver somniferum HOM05D001363 ORTHO05D002212 1.8e-11 72.8 115 40.9
PSO461G0042 Papaver somniferum HOM05D001363 ORTHO05D002212 1.8e-11 72.8 115 40.9
TWI09G0463 Tripterygium wilfordii HOM05D001363 ORTHO05D002212 1.8e-11 72.8 116 42.2
Aqoxy2G03469 Aquilegia oxysepala HOM05D001363 ORTHO05D002212 2.3e-11 72.4 116 42.2
HanXRQChr03g0062511 Helianthus annuus HOM05D001363 ORTHO05D002212 2.3e-11 72.4 111 44.1
Oeu017766.1 Olea europaea HOM05D001363 ORTHO05D002212 2.3e-11 72.4 115 41.7
ATR0665G613 Amborella trichopoda HOM05D001363 ORTHO05D002212 3.1e-11 72.0 109 43.1
BcaB04g20490 Brassica carinata HOM05D001363 ORTHO05D002212 3.1e-11 72.0 111 42.3
CARHR098810 Cardamine hirsuta HOM05D001363 ORTHO05D002212 3.1e-11 72.0 112 42.0
CARHR265640 Cardamine hirsuta HOM05D001363 ORTHO05D002212 3.1e-11 72.0 112 42.0
Haze_11238 Corylus avellana HOM05D001363 ORTHO05D002212 3.1e-11 72.0 116 40.5
Lalb_Chr21g0304801 Lupinus albus HOM05D001363 ORTHO05D002212 3.1e-11 72.0 116 40.5
CANSAT78G1246 Cannabis sativa HOM05D001363 ORTHO05D002212 4.0e-11 71.6 116 39.7
RhsimUnG0023700 Rhododendron simsii HOM05D001363 ORTHO05D002212 4.0e-11 71.6 115 42.6
RhsimUnG0184600 Rhododendron simsii HOM05D001363 ORTHO05D002212 4.0e-11 71.6 115 42.6
AL3G37220 Arabidopsis lyrata HOM05D001363 ORTHO05D002212 5.2e-11 71.2 111 41.4
Potri.010G081500 Populus trichocarpa HOM05D001363 ORTHO05D002212 5.2e-11 71.2 111 42.3
MBI11_g21320_MAGBIO Magnolia biondii HOM05D001363 ORTHO05D002212 6.8e-11 70.9 109 41.3
Os11g0146800 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 6.8e-11 70.9 109 43.1
Os12g0143800 Oryza sativa ssp. japonica HOM05D001363 ORTHO05D002212 6.8e-11 70.9 109 43.1
Pp3c20_7190 Physcomitrium patens HOM05D001363 ORTHO05D002212 6.8e-11 70.9 119 40.3
HPP92_020346 Vanilla planifolia HOM05D001363 ORTHO05D002212 1.5e-10 69.7 109 42.2
Zm00001eb163340 Zea mays HOM05D001363 ORTHO05D002212 1.5e-10 69.7 123 39.8
Aa31LG8G9380 Aethionema arabicum HOM05D001363 ORTHO05D002212 3.4e-10 68.6 117 41.9
TPR.G26112 Trifolium pratense HOM05D001363 ORTHO05D002212 7.6e-10 67.4 120 40.8
Ah.04g154310 Amaranthus hybridus HOM05D001363 ORTHO05D002212 2.9e-09 65.5 42 73.8
vmacro15377 Vaccinium macrocarpon HOM05D001363 ORTHO05D002212 2.9e-09 65.5 104 42.3
Mapoly0108s0001 Marchantia polymorpha HOM05D001363 ORTHO05D002212 8.4e-09 63.9 109 37.6
Mapoly0110s0049 Marchantia polymorpha HOM05D001363 ORTHO05D002212 8.4e-09 63.9 109 37.6
ClCG05G004820 Citrullus lanatus HOM05D001363 ORTHO05D002212 1.1e-08 63.5 65 49.2
FAN17G1768 Fragaria x ananassa HOM05D002547 ORTHO05D002649 1.4e-08 63.2 65 47.7
Oeu064242.1 Olea europaea HOM05D000700 ORTHO05D000397 1.9e-08 62.8 43 67.4
Sed0025938 Sechium edule HOM05D001363 ORTHO05D002212 2.4e-08 62.4 65 47.7
Gohir.A09G219600 Gossypium hirsutum HOM05D001363 ORTHO05D002212 3.2e-08 62.0 99 41.4
Sabra08G0120800 Salix brachista HOM05D001363 ORTHO05D002212 4.1e-08 61.6 66 47.0
EL10Ac3g06502 Beta vulgaris HOM05D001363 ORTHO05D002212 5.4e-08 61.2 104 39.4
AUR62034680 Chenopodium quinoa HOM05D001363 ORTHO05D002212 5.4e-08 61.2 65 47.7
Peaxi162Scf00316g00323 Petunia axillaris HOM05D001363 ORTHO05D002212 9.2e-08 60.5 128 35.9
Sabra10G0061400 Salix brachista HOM05D001363 ORTHO05D002212 1.2e-07 60.1 43 65.1
Aqoxy7G01707 Aquilegia oxysepala HOM05D001363 ORTHO05D002212 2.7e-07 58.9 117 35.0
CBR_g8885 Chara braunii HOM05D001363 ORTHO05D002212 2.7e-07 58.9 95 40.0
BcaB06g26403 Brassica carinata HOM05D001363 ORTHO05D002212 3.5e-07 58.5 61 47.5
Medtr5g042180 Medicago truncatula HOM05D002036 ORTHO05D001913 4.6e-07 58.2 59 47.5
BcaC05g28007 Brassica carinata HOM05D001363 ORTHO05D002212 2.3e-06 55.8 38 68.4
SHI00528 Sapria himalayana HOM05D001363 ORTHO05D002212 6.6e-06 54.3 35 71.4


User provided reference genes

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