Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g065440.4 Solanum lycopersicum HOM05D001458 ORTHO05D007170 8.7e-96 353.6 175 100.0
Sopen07g033650 Solanum pennellii HOM05D001458 ORTHO05D007170 5.5e-74 281.2 143 97.2
PGSC0003DMG401022175 Solanum tuberosum HOM05D001458 ORTHO05D007170 2.7e-73 278.9 143 95.1
CAN.G2569.1 Capsicum annuum HOM05D001458 ORTHO05D007170 8.2e-70 267.3 143 90.9
CAN.G337.9 Capsicum annuum HOM05D001458 ORTHO05D007170 8.2e-70 267.3 143 90.9
CAN.G1110.16 Capsicum annuum HOM05D001458 ORTHO05D007170 2.9e-67 258.8 147 87.8
Nitab4.5_0000461g0220 Nicotiana tabacum HOM05D001458 ORTHO05D007170 2.7e-65 252.3 143 88.8
Nitab4.5_0006886g0030 Nicotiana tabacum HOM05D001458 ORTHO05D007170 6.1e-65 251.1 143 87.4
GSVIVG01014659001 Vitis vinifera HOM05D001458 ORTHO05D007170 2.5e-58 229.2 141 77.3
Dinv40848 Davidia involucrata HOM05D001458 ORTHO05D007170 1.6e-57 226.5 167 68.3
Peaxi162Scf00612g00139 Petunia axillaris HOM05D001458 ORTHO05D007170 6.1e-57 224.6 135 85.2
CSS0027160 Camellia sinensis var. sinensis HOM05D001458 ORTHO05D007170 8.0e-57 224.2 146 74.0
Peaxi162Scf00612g00028 Petunia axillaris HOM05D001458 ORTHO05D007170 4.0e-56 221.9 135 84.4
FvH4_3g29420 Fragaria vesca HOM05D001458 ORTHO05D007170 5.2e-56 221.5 147 74.1
HanXRQChr05g0161861 Helianthus annuus HOM05D001458 ORTHO05D007170 1.2e-55 220.3 143 76.2
CSS0006064 Camellia sinensis var. sinensis HOM05D001458 ORTHO05D007170 1.5e-55 219.9 146 72.6
Cc05_g14850 Coffea canephora HOM05D001458 ORTHO05D007170 2.6e-55 219.2 146 72.6
FAN25G1628 Fragaria x ananassa HOM05D001458 ORTHO05D007170 3.4e-55 218.8 147 72.8
FAN16G1179 Fragaria x ananassa HOM05D001458 ORTHO05D007170 1.3e-54 216.9 147 72.8
Cfa020207 Carpinus fangiana HOM05D001458 ORTHO05D007170 2.8e-54 215.7 143 72.7
Actinidia35397 Actinidia chinensis HOM05D001458 ORTHO05D007170 3.7e-54 215.3 146 71.2
Rhsim04G0013200 Rhododendron simsii HOM05D001458 ORTHO05D007170 3.7e-54 215.3 146 71.9
Haze_09810 Corylus avellana HOM05D001458 ORTHO05D007170 4.8e-54 214.9 143 72.0
Nn1g03205 Nelumbo nucifera HOM05D001458 ORTHO05D007170 1.8e-53 213.0 149 67.8
RcHm_v2.0_Chr5g0053841 Rosa chinensis HOM05D001458 ORTHO05D007170 3.5e-52 208.8 147 70.7
Oeu005966.1 Olea europaea HOM05D001458 ORTHO05D007170 4.5e-52 208.4 141 70.2
TWI39G0056 Tripterygium wilfordii HOM05D001458 ORTHO05D007170 5.9e-52 208.0 143 70.6
CiPaw.11G202700 Carya illinoinensis HOM05D001458 ORTHO05D007170 1.3e-51 206.8 144 70.1
Prupe.4G241800 Prunus persica HOM05D001458 ORTHO05D007170 2.2e-51 206.1 147 70.1
Hma1.2p1_0889F.1_g232825 Hydrangea macrophylla HOM05D001458 ORTHO05D007170 2.9e-51 205.7 123 80.5
Migut.M01660 Erythranthe guttata HOM05D001458 ORTHO05D007170 5.0e-51 204.9 143 69.9
THA.LOC104810290 Tarenaya hassleriana HOM05D001458 ORTHO05D007170 2.5e-50 202.6 143 69.2
PSO210G4199 Papaver somniferum HOM05D001458 ORTHO05D007170 5.5e-50 201.4 143 62.9
Cpa.g.sc12.159 Carica papaya HOM05D001458 ORTHO05D007170 9.4e-50 200.7 141 70.9
Duzib170G0318 Durio zibethinus HOM05D001458 ORTHO05D007170 9.4e-50 200.7 143 67.8
Sed0010799 Sechium edule HOM05D001458 ORTHO05D007170 9.4e-50 200.7 143 67.1
Gohir.D01G075900 Gossypium hirsutum HOM05D001458 ORTHO05D007170 1.6e-49 199.9 143 68.5
Potri.001G366700 Populus trichocarpa HOM05D001458 ORTHO05D007170 1.6e-49 199.9 137 70.1
Gorai.002G099100 Gossypium raimondii HOM05D001458 ORTHO05D007170 2.1e-49 199.5 143 67.8
MD11G1201200 Malus domestica HOM05D001458 ORTHO05D007170 2.7e-49 199.1 147 67.3
Gohir.A01G090600 Gossypium hirsutum HOM05D001458 ORTHO05D007170 3.6e-49 198.7 143 67.8
ECA236G2484 Erigeron canadensis HOM05D003423 ORTHO05D003910 4.7e-49 198.4 131 72.5
SGA_v2.0_scaffold171G38881 Striga asiatica HOM05D003514 ORTHO05D004280 6.1e-49 198.0 146 69.2
Aqoxy1G04244 Aquilegia oxysepala HOM05D001458 ORTHO05D007170 8.0e-49 197.6 149 65.1
PGR031G1458 Punica granatum HOM05D001458 ORTHO05D007170 8.0e-49 197.6 145 66.2
QL08p004686 Quercus lobata HOM05D001458 ORTHO05D007170 1.8e-48 196.4 135 69.6
MELO3C024924.2 Cucumis melo HOM05D001458 ORTHO05D007170 1.2e-47 193.7 143 63.6
CsaV3_UNG214460 Cucumis sativus L. HOM05D001458 ORTHO05D007170 1.2e-47 193.7 170 57.1
BolC1t05139H Brassica oleracea HOM05D001458 ORTHO05D007170 3.4e-47 192.2 143 67.1
BraA01t04073Z Brassica rapa HOM05D001458 ORTHO05D007170 3.4e-47 192.2 143 67.1
QL08p004639 Quercus lobata HOM05D001458 ORTHO05D007170 4.4e-47 191.8 135 68.9
CsaV3_7G017280 Cucumis sativus L. HOM05D001458 ORTHO05D007170 7.5e-47 191.0 143 62.9
CsaV3_UNG200520 Cucumis sativus L. HOM05D001458 ORTHO05D007170 7.5e-47 191.0 143 62.9
Thhalv10022332m.g Eutrema salsugineum HOM05D001458 ORTHO05D007170 7.5e-47 191.0 143 65.7
AL3G24910 Arabidopsis lyrata HOM05D001458 ORTHO05D007170 2.2e-46 189.5 143 65.7
Psat2g008560 Pisum sativum HOM05D001458 ORTHO05D007170 2.8e-46 189.1 147 63.9
Sabra16G0240000 Salix brachista HOM05D001458 ORTHO05D007170 2.8e-46 189.1 142 65.5
Carub.0003s1251 Capsella rubella HOM05D001458 ORTHO05D007170 3.7e-46 188.7 143 65.0
Atru.chr2.3674 Acer truncatum HOM05D001458 ORTHO05D007170 4.9e-46 188.3 137 68.6
CAN.G337.13 Capsicum annuum HOM05D001458 ORTHO05D007170 4.9e-46 188.3 110 85.5
LjContig00081g0000365 Lotus japonicus HOM05D001458 ORTHO05D007170 6.3e-46 188.0 140 65.7
Psat4g050240 Pisum sativum HOM05D001458 ORTHO05D007170 6.3e-46 188.0 147 63.9
Medtr5g095090 Medicago truncatula HOM05D001458 ORTHO05D007170 8.3e-46 187.6 161 59.6
CANSAT11G0117 Cannabis sativa HOM05D001458 ORTHO05D007170 1.8e-45 186.4 151 61.6
Phvul.008G278300 Phaseolus vulgaris HOM05D001458 ORTHO05D007170 4.1e-45 185.3 149 61.1
AT3G13170 Arabidopsis thaliana HOM05D001458 ORTHO05D007170 5.4e-45 184.9 143 63.6
CARHR087750 Cardamine hirsuta HOM05D001458 ORTHO05D007170 5.4e-45 184.9 143 65.0
arahy.Tifrunner.gnm1.ann1.ARH0VQ Arachis hypogaea HOM05D001458 ORTHO05D007170 9.1e-45 184.1 142 64.1
Eucgr.F03701 Eucalyptus grandis HOM05D001458 ORTHO05D007170 9.1e-45 184.1 148 61.5
A01p40380 Brassica napus HOM05D001458 ORTHO05D007170 1.6e-44 183.3 140 65.7
arahy.Tifrunner.gnm1.ann1.5UA89R Arachis hypogaea HOM05D001458 ORTHO05D007170 2.7e-44 182.6 142 64.1
C01p51920 Brassica napus HOM05D001458 ORTHO05D007170 2.7e-44 182.6 137 66.4
Aa31LG8G370 Aethionema arabicum HOM05D001458 ORTHO05D007170 1.0e-43 180.6 143 62.9
Lj1g0016902 Lotus japonicus HOM05D001458 ORTHO05D007170 1.0e-43 180.6 139 62.6
CsaV3_7G017270 Cucumis sativus L. HOM05D001458 ORTHO05D007170 1.7e-43 179.9 150 59.3
TPR.G14176 Trifolium pratense HOM05D001458 ORTHO05D007170 5.0e-43 178.3 140 64.3
Sc03g0011170 Simmondsia chinensis HOM05D001458 ORTHO05D007170 6.6e-43 177.9 136 62.5
unitig_747.g21640 Utricularia gibba HOM05D001458 ORTHO05D007170 5.6e-42 174.9 149 58.4
CsaV3_7G018280 Cucumis sativus L. HOM05D001458 ORTHO05D007170 2.1e-41 172.9 120 66.7
Ciclev10010322m.g Citrus clementina HOM05D001458 ORTHO05D007170 2.8e-41 172.6 140 59.3
ClCG09G021210 Citrullus lanatus HOM05D001458 ORTHO05D007170 1.4e-40 170.2 135 62.2
MBI16_g22433_MAGBIO Magnolia biondii HOM05D001458 ORTHO05D007170 1.8e-40 169.9 180 54.4
FAN11G2921 Fragaria x ananassa HOM05D001458 ORTHO05D007170 3.0e-40 169.1 147 62.6
SalBow8G1206 Salvia bowleyana HOM05D001458 ORTHO05D007170 1.5e-39 166.8 124 63.7
ATR0827G179 Amborella trichopoda HOM05D001458 ORTHO05D007170 2.2e-38 162.9 141 56.0
Os03g0752200 Oryza sativa ssp. japonica HOM05D001458 ORTHO05D007170 1.2e-36 157.1 137 55.5
Zm00001eb214790 Zea mays HOM05D001458 ORTHO05D007170 5.9e-36 154.8 150 52.7
Lj8A178T76 Lonicera japonica HOM05D001458 ORTHO05D007170 2.3e-35 152.9 94 81.9
Medtr5g095040 Medicago truncatula HOM05D001458 ORTHO05D007170 2.8e-33 146.0 160 49.4
Hund01905 Selenicereus undatus HOM05D001458 ORTHO05D007170 2.8e-33 146.0 143 55.9
Ca_06383_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 5.2e-32 141.7 88 72.7
Ca_29964_v3 Cicer arietinum L. HOM05D001458 ORTHO05D007170 5.2e-32 141.7 88 72.7
vmacro09653 Vaccinium macrocarpon HOM05D001458 ORTHO05D007170 2.0e-31 139.8 95 70.5
PSO210G1564 Papaver somniferum HOM05D001458 ORTHO05D007170 1.9e-29 133.3 79 78.5
SEGI_24669 Sequoiadendron giganteum HOM05D001458 ORTHO05D007170 2.4e-29 132.9 147 46.9
Sp3g11340 Schrenkiella parvula HOM05D001458 ORTHO05D007170 1.0e-27 127.5 106 61.3
AUR62017079 Chenopodium quinoa HOM05D001458 ORTHO05D007170 3.0e-27 125.9 143 46.2
AUR62036436 Chenopodium quinoa HOM05D001458 ORTHO05D007170 1.5e-26 123.6 141 46.1
Manes.15G061000 Manihot esculenta HOM05D001458 ORTHO05D007170 1.5e-26 123.6 66 89.4
COL.COLO4_07102 Corchorus olitorius HOM05D001458 ORTHO05D007170 6.8e-24 114.8 143 46.9
EL10Ac4g07597 Beta vulgaris HOM05D001458 ORTHO05D007170 9.8e-23 110.9 143 43.4
Glyma.02G299600 Glycine max HOM05D001458 ORTHO05D007170 1.3e-22 110.5 65 78.5
Lalb_Chr04g0247891 Lupinus albus HOM05D001458 ORTHO05D007170 2.1e-20 103.2 128 46.1
HPP92_018596 Vanilla planifolia HOM05D001458 ORTHO05D007170 1.8e-16 90.1 86 48.8
Pp3c6_18230 Physcomitrium patens HOM05D001458 ORTHO05D007170 1.5e-15 87.0 145 38.6
AagrBONN_evm.TU.Sc2ySwM_368.1624 Anthoceros agrestis HOM05D001458 ORTHO05D007170 2.0e-15 86.7 132 37.1
MD03G1184400 Malus domestica HOM05D001458 ORTHO05D007170 1.9e-13 80.1 80 48.8
SMO239G0116 Selaginella moellendorffii HOM05D001458 ORTHO05D007170 3.2e-13 79.3 65 55.4
SMO307G0075 Selaginella moellendorffii HOM05D001458 ORTHO05D007170 4.1e-13 79.0 142 35.9
Thecc.07G015600 Theobroma cacao HOM05D001458 ORTHO05D007170 2.7e-12 76.3 40 87.5
HanXRQChr05g0161851 Helianthus annuus HOM05D001458 ORTHO05D007170 3.5e-12 75.9 40 87.5
SHI26533 Sapria himalayana HOM05D001458 ORTHO05D007170 6.6e-11 71.6 90 43.3
SMO307G0021 Selaginella moellendorffii HOM05D001458 ORTHO05D007170 5.6e-10 68.6 65 52.3
Lsat_1_v5_gn_4_63960 Lactuca sativa HOM05D001458 ORTHO05D007170 7.3e-10 68.2 38 81.6
MD03G1184500 Malus domestica HOM05D001458 ORTHO05D007170 6.8e-08 61.6 33 87.9
Ah.06g181360 Amaranthus hybridus HOM05D001458 ORTHO05D007170 5.8e-07 58.5 51 49.0
CAN.G350.46 Capsicum annuum HOM05D001458 ORTHO05D006787 2.2e-06 56.6 70 37.1
MBI14_g28308_MAGBIO Magnolia biondii HOM05D001458 ORTHO05D006787 2.2e-06 56.6 126 30.2
Solyc09g007210.4 Solanum lycopersicum HOM05D001458 ORTHO05D006787 2.2e-06 56.6 70 35.7
Sopen09g002080 Solanum pennellii HOM05D001458 ORTHO05D006787 2.2e-06 56.6 70 35.7
PGSC0003DMG400027900 Solanum tuberosum HOM05D001458 ORTHO05D006787 2.2e-06 56.6 70 35.7
QL07p045562 Quercus lobata HOM05D001458 ORTHO05D006787 2.9e-06 56.2 70 34.3
Sed0021994 Sechium edule HOM05D001458 ORTHO05D006787 2.9e-06 56.2 70 35.7
Actinidia11230 Actinidia chinensis HOM05D001458 ORTHO05D006787 3.8e-06 55.8 70 35.7
Cre02.g084800 Chlamydomonas reinhardtii HOM05D001458 ORTHO05D006787 3.8e-06 55.8 70 38.6
Nitab4.5_0000848g0150 Nicotiana tabacum HOM05D001458 ORTHO05D006787 3.8e-06 55.8 70 34.3
Nitab4.5_0006316g0010 Nicotiana tabacum HOM05D001458 ORTHO05D006787 3.8e-06 55.8 70 34.3
Peaxi162Scf01517g00015 Petunia axillaris HOM05D001458 ORTHO05D006787 3.8e-06 55.8 70 34.3
RhsimUnG0119500 Rhododendron simsii HOM05D001458 ORTHO05D006787 3.8e-06 55.8 168 25.6
Aa31LG1G22080 Aethionema arabicum HOM05D001458 ORTHO05D006787 4.9e-06 55.5 70 32.9
ClCG04G008770 Citrullus lanatus HOM05D001458 ORTHO05D006787 4.9e-06 55.5 70 34.3
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 4.9e-06 55.5 70 32.9
Hma1.2p1_0350F.1_g132690 Hydrangea macrophylla HOM05D001458 ORTHO05D006787 4.9e-06 55.5 70 34.3
Lj3A977T51 Lonicera japonica HOM05D001458 ORTHO05D006787 4.9e-06 55.5 70 34.3
THA.LOC104816314 Tarenaya hassleriana HOM05D001458 ORTHO05D006787 4.9e-06 55.5 70 32.9
AagrBONN_evm.TU.Sc2ySwM_228.407 Anthoceros agrestis HOM05D001458 ORTHO05D006787 6.4e-06 55.1 70 37.1
AL6G12090 Arabidopsis lyrata HOM05D001458 ORTHO05D006787 6.4e-06 55.1 70 32.9
AT5G02820 Arabidopsis thaliana HOM05D001458 ORTHO05D006787 6.4e-06 55.1 70 32.9
A10p32900 Brassica napus HOM05D001458 ORTHO05D006787 6.4e-06 55.1 70 32.9
C09p73830 Brassica napus HOM05D001458 ORTHO05D006787 6.4e-06 55.1 70 32.9
BolC9t60117H Brassica oleracea HOM05D001458 ORTHO05D006787 6.4e-06 55.1 70 32.9
BraA10t45327Z Brassica rapa HOM05D001458 ORTHO05D006787 6.4e-06 55.1 70 32.9
Carub.0006s0162 Capsella rubella HOM05D001458 ORTHO05D006787 6.4e-06 55.1 70 32.9
CARHR210510 Cardamine hirsuta HOM05D001458 ORTHO05D006787 6.4e-06 55.1 70 32.9
CiPaw.09G182000 Carya illinoinensis HOM05D001458 ORTHO05D006787 6.4e-06 55.1 70 32.9
Cc06_g03430 Coffea canephora HOM05D001458 ORTHO05D006787 6.4e-06 55.1 70 32.9
COL.COLO4_09815 Corchorus olitorius HOM05D001458 ORTHO05D007170 6.4e-06 55.1 26 96.2
Thhalv10015802m.g Eutrema salsugineum HOM05D001458 ORTHO05D006787 6.4e-06 55.1 70 32.9
HanXRQChr02g0051861 Helianthus annuus HOM05D001458 ORTHO05D006787 6.4e-06 55.1 70 34.3
Lsat_1_v5_gn_6_29580 Lactuca sativa HOM05D001458 ORTHO05D006787 6.4e-06 55.1 70 34.3
Mapoly0114s0011 Marchantia polymorpha HOM05D001458 ORTHO05D006787 6.4e-06 55.1 70 37.1
SalBow4G2907 Salvia bowleyana HOM05D001458 ORTHO05D006787 6.4e-06 55.1 70 34.3
Sp6g39760 Schrenkiella parvula HOM05D001458 ORTHO05D006787 6.4e-06 55.1 70 32.9
TWI18G0556 Tripterygium wilfordii HOM05D001458 ORTHO05D006787 6.4e-06 55.1 85 29.4
EL10Ac7g17326 Beta vulgaris HOM05D001458 ORTHO05D006787 8.4e-06 54.7 70 37.1
AUR62040528 Chenopodium quinoa HOM05D001458 ORTHO05D006787 8.4e-06 54.7 70 37.1
AUR62042916 Chenopodium quinoa HOM05D001458 ORTHO05D006787 8.4e-06 54.7 70 37.1
MELO3C003071.2 Cucumis melo HOM05D001458 ORTHO05D006787 8.4e-06 54.7 70 34.3
CsaV3_4G024390 Cucumis sativus L. HOM05D001458 ORTHO05D006787 8.4e-06 54.7 70 34.3
DCAR_009271 Daucus carota HOM05D001458 ORTHO05D006787 8.4e-06 54.7 70 32.9
ECA233G5957 Erigeron canadensis HOM05D001458 ORTHO05D006787 8.4e-06 54.7 70 32.9
Migut.L01653 Erythranthe guttata HOM05D001458 ORTHO05D006787 8.4e-06 54.7 70 34.3


User provided reference genes

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