Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc07g021210.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.4e-47 191.8 96 100.0
Sed0024913 Sechium edule HOM05D000216 ORTHO05D000634 5.0e-29 131.0 101 69.3
CAN.G219.18 Capsicum annuum HOM05D000216 ORTHO05D000634 1.1e-28 129.8 116 61.2
PGR111G0082 Punica granatum HOM05D000216 ORTHO05D000634 7.3e-28 127.1 112 61.6
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 9.5e-28 126.7 112 62.5
COL.COLO4_37398 Corchorus olitorius HOM05D000216 ORTHO05D000634 1.2e-27 126.3 112 61.6
DCAR_032475 Daucus carota HOM05D000216 ORTHO05D000634 2.8e-27 125.2 112 60.7
Potri.013G140850 Populus trichocarpa HOM05D000216 ORTHO05D000634 2.8e-27 125.2 112 62.5
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 2.8e-27 125.2 112 62.5
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 4.7e-27 124.4 112 61.6
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 4.7e-27 124.4 112 61.6
Gorai.005G167800 Gossypium raimondii HOM05D000216 ORTHO05D000634 4.7e-27 124.4 112 60.7
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 4.7e-27 124.4 112 61.6
ATR0187G002 Amborella trichopoda HOM05D000216 ORTHO05D000634 8.0e-27 123.6 112 60.7
LjContig00489g0016986 Lotus japonicus HOM05D000216 ORTHO05D000634 1.4e-26 122.9 112 60.7
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 1.8e-26 122.5 112 59.8
Hma1.2p1_0094F.1_g047102 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 4.0e-26 121.3 112 59.8
PSO548G0054 Papaver somniferum HOM05D000216 ORTHO05D000634 6.8e-26 120.6 112 58.9
Sed0020606 Sechium edule HOM05D000216 ORTHO05D000634 8.9e-26 120.2 101 65.3
Hund27655 Selenicereus undatus HOM05D000216 ORTHO05D000634 8.9e-26 120.2 112 58.9
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 8.9e-26 120.2 112 58.9
Psat0s6357g0040 Pisum sativum HOM05D000216 ORTHO05D001131 1.2e-25 119.8 111 58.6
ATCG00180 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 2.0e-25 119.0 112 58.9
BolSC37t60766H Brassica oleracea HOM05D000216 ORTHO05D000634 2.0e-25 119.0 112 58.9
BolSC45t60875H Brassica oleracea HOM05D000216 ORTHO05D000634 2.0e-25 119.0 112 58.9
BraSC151t45702Z Brassica rapa HOM05D000216 ORTHO05D000634 2.0e-25 119.0 112 58.9
BraSC58t46407Z Brassica rapa HOM05D000216 ORTHO05D000634 2.0e-25 119.0 112 58.9
BNapus_Darmor_BZH_scaffold_253p00070 Brassica napus HOM05D000216 ORTHO05D000634 2.6e-25 118.6 112 58.0
LjContig00318g0019842 Lotus japonicus HOM05D000216 ORTHO05D000634 2.6e-25 118.6 114 57.9
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.8e-25 117.5 121 56.2
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.8e-25 117.5 121 56.2
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 5.8e-25 117.5 121 56.2
arahy.Tifrunner.gnm1.ann1.YJD706 Arachis hypogaea HOM05D000216 ORTHO05D000634 1.3e-24 116.3 114 57.0
CARHR281930 Cardamine hirsuta HOM05D000216 ORTHO05D001131 1.3e-24 116.3 112 58.0
FAN07G2613 Fragaria x ananassa HOM05D000216 ORTHO05D000634 1.7e-24 115.9 113 58.4
Sed0025165 Sechium edule HOM05D000216 ORTHO05D000634 2.2e-24 115.5 99 64.6
Medtr3g062770 Medicago truncatula HOM05D000216 ORTHO05D000634 4.9e-24 114.4 116 56.0
Medtr3g062790 Medicago truncatula HOM05D000216 ORTHO05D000634 4.9e-24 114.4 116 56.0
Medtr4g051130 Medicago truncatula HOM05D000216 ORTHO05D001131 4.9e-24 114.4 116 56.0
BolSC44t60848H Brassica oleracea HOM05D000216 ORTHO05D000634 3.2e-23 111.7 107 57.9
BolSC45t60939H Brassica oleracea HOM05D000216 ORTHO05D000634 3.2e-23 111.7 107 57.9
Migut.D01343 Erythranthe guttata HOM05D000216 ORTHO05D000634 4.6e-22 107.8 110 56.4
Lj2A1237T129 Lonicera japonica HOM05D000216 ORTHO05D000634 6.0e-22 107.5 110 53.6
Lj2C1238G20 Lonicera japonica HOM05D000216 ORTHO05D000634 6.0e-22 107.5 110 53.6
HanXRQChr00c0823g0577611 Helianthus annuus HOM05D000216 ORTHO05D000634 1.9e-20 102.4 112 50.9
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 1.9e-20 102.4 112 50.9
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 1.9e-20 102.4 112 50.9
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 1.9e-20 102.4 112 50.9
Lsat_1_v5_gn_1_96161 Lactuca sativa HOM05D000216 ORTHO05D000634 1.9e-20 102.4 112 50.9
Lsat_1_v5_gn_8_1820 Lactuca sativa HOM05D000216 ORTHO05D000634 1.9e-20 102.4 112 50.9
Hund28351 Selenicereus undatus HOM05D000216 ORTHO05D001131 9.5e-20 100.1 103 54.4
QL93p1429_0001 Quercus lobata HOM05D000216 ORTHO05D000634 2.1e-19 99.0 98 56.1
HanXRQChr13g0417241 Helianthus annuus HOM05D000216 ORTHO05D001131 6.2e-19 97.4 112 49.1
Ca_05612_v3 Cicer arietinum L. HOM05D000216 ORTHO05D000634 3.1e-18 95.1 57 78.9
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 3.1e-18 95.1 118 45.8
Hund28576 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.0e-18 94.7 64 70.3
Hund27561 Selenicereus undatus HOM05D000216 ORTHO05D000634 8.9e-18 93.6 64 68.8
Hund27997 Selenicereus undatus HOM05D000216 ORTHO05D000634 8.9e-18 93.6 64 68.8
Hund28278 Selenicereus undatus HOM05D000216 ORTHO05D000634 8.9e-18 93.6 64 68.8
Hund28386 Selenicereus undatus HOM05D000216 ORTHO05D000634 8.9e-18 93.6 64 68.8
Hund28558 Selenicereus undatus HOM05D000216 ORTHO05D000634 8.9e-18 93.6 64 68.8
Hund29353 Selenicereus undatus HOM05D000216 ORTHO05D000634 8.9e-18 93.6 64 68.8
Hund29739 Selenicereus undatus HOM05D000216 ORTHO05D000634 8.9e-18 93.6 64 68.8
AUR62024083 Chenopodium quinoa HOM05D000216 ORTHO05D001131 1.5e-17 92.8 64 67.2
CsaV3_UNG208340 Cucumis sativus L. HOM05D000216 ORTHO05D001131 4.4e-17 91.3 72 68.1
Medtr8g016510 Medicago truncatula HOM05D000216 ORTHO05D000634 5.8e-17 90.9 72 63.9
Psat5g263640 Pisum sativum HOM05D000216 ORTHO05D000634 7.6e-17 90.5 60 71.7
Medtr7g067760 Medicago truncatula HOM05D000216 ORTHO05D000634 2.9e-16 88.6 57 73.7
Psat7g026760 Pisum sativum HOM05D000216 ORTHO05D000634 6.4e-16 87.4 60 66.7
ECA054G0005 Erigeron canadensis HOM05D000216 ORTHO05D000634 1.4e-15 86.3 57 70.2
ECA169G0008 Erigeron canadensis HOM05D000216 ORTHO05D000634 1.4e-15 86.3 57 70.2
Lalb_Chr06g0173041 Lupinus albus HOM05D000216 ORTHO05D000634 3.2e-15 85.1 55 70.9
Lj2A1227T105 Lonicera japonica HOM05D000216 ORTHO05D000634 1.2e-14 83.2 63 60.3
Psat0s1150g0080 Pisum sativum HOM05D000216 ORTHO05D000634 1.6e-14 82.8 94 51.1
EL10Ac9g21013 Beta vulgaris HOM05D000216 ORTHO05D000634 2.1e-14 82.4 60 66.7
Lj2C1239T55 Lonicera japonica HOM05D000216 ORTHO05D000634 2.1e-14 82.4 63 60.3
Nitab4.5_0003222g0030 Nicotiana tabacum HOM05D000216 ORTHO05D000634 2.7e-14 82.0 59 69.5
HanXRQChr15g0488301 Helianthus annuus HOM05D000216 ORTHO05D000634 3.5e-14 81.6 57 68.4
Lsat_1_v5_gn_2_41761 Lactuca sativa HOM05D000216 ORTHO05D000634 3.5e-14 81.6 57 68.4
Lsat_1_v5_gn_6_87861 Lactuca sativa HOM05D000216 ORTHO05D000634 3.5e-14 81.6 57 68.4
HanXRQChr00c0994g0578181 Helianthus annuus HOM05D000216 ORTHO05D000634 7.8e-14 80.5 96 46.9
CAN.G802.5 Capsicum annuum HOM05D001109 ORTHO05D001051 1.3e-13 79.7 54 70.4
Nitab4.5_0000172g0250 Nicotiana tabacum HOM05D000216 ORTHO05D001131 1.3e-13 79.7 88 54.5
Nitab4.5_0003222g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.7e-13 79.3 74 59.5
Gohir.D07G155233 Gossypium hirsutum HOM05D000216 ORTHO05D000634 3.9e-13 78.2 49 71.4
Lsat_1_v5_gn_8_77281 Lactuca sativa HOM05D000216 ORTHO05D000634 3.9e-13 78.2 57 63.2
Nitab4.5_0002734g0010 Nicotiana tabacum HOM05D007924 ORTHO05D010328 3.9e-13 78.2 58 67.2
Gorai.001G177800 Gossypium raimondii HOM05D000216 ORTHO05D000634 1.5e-12 76.3 56 62.5
Lalb_Chr09g0335381 Lupinus albus HOM05D000216 ORTHO05D000634 2.1e-11 72.4 42 78.6
Lalb_Chr24g0400941 Lupinus albus HOM05D000216 ORTHO05D000634 2.1e-11 72.4 42 78.6
AL2G20940 Arabidopsis lyrata HOM05D000216 ORTHO05D000634 6.2e-11 70.9 42 76.2
BraSC58t46478Z Brassica rapa HOM05D000216 ORTHO05D000634 6.2e-11 70.9 42 76.2
unitig_91.g26497 Utricularia gibba HOM05D000216 ORTHO05D000634 6.2e-11 70.9 42 73.8
arahy.Tifrunner.gnm1.ann1.Q9IK60 Arachis hypogaea HOM05D000216 ORTHO05D014073 1.8e-10 69.3 45 71.1
Lalb_Chr06g0173131 Lupinus albus HOM05D000216 ORTHO05D000634 6.8e-10 67.4 42 71.4
Psat0s4841g0120 Pisum sativum HOM05D000216 ORTHO05D000634 6.8e-10 67.4 53 60.4
Psat7g064880 Pisum sativum HOM05D000216 ORTHO05D000634 6.8e-10 67.4 42 71.4
Lju2566C0G7 Lonicera japonica HOM05D000216 ORTHO05D000634 8.9e-10 67.0 63 55.6
SGA_v2.0_scaffold10G05379 Striga asiatica HOM05D000216 ORTHO05D000634 2.0e-09 65.9 44 63.6
Lalb_Chr07g0192751 Lupinus albus HOM05D000216 ORTHO05D000634 4.4e-09 64.7 42 71.4
Medtr4g009210 Medicago truncatula HOM05D000216 ORTHO05D000634 1.3e-08 63.2 42 71.4
SEGI_00207 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 1.7e-08 62.8 49 57.1
SHI35296 Sapria himalayana HOM05D000216 ORTHO05D000634 2.2e-08 62.4 83 50.6
Lj2C1224G59 Lonicera japonica HOM05D000216 ORTHO05D000634 4.9e-08 61.2 41 63.4
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 4.9e-08 61.2 41 63.4
Psat6g181520 Pisum sativum HOM05D000216 ORTHO05D000634 2.4e-07 58.9 42 64.3


User provided reference genes

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