Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1882.1 961 100.0
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1845.9 961 98.3
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1796.9 962 95.0
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1733.4 980 90.8
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1654.8 962 87.4
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1651.3 963 86.7
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1641.3 963 86.2
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1621.3 919 86.8
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1613.2 905 91.2
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1612.0 951 86.6
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1580.1 964 84.0
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1575.1 964 82.6
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1574.7 966 83.2
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1574.3 967 82.3
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1567.0 961 83.7
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1566.6 966 82.2
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1565.1 961 81.5
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1563.9 920 82.7
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1563.1 919 83.7
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1560.8 965 81.7
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1553.1 966 80.2
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1551.2 965 79.9
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1548.9 919 82.9
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1540.0 965 80.4
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1538.1 961 79.1
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1537.7 966 80.1
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1537.3 966 80.2
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1537.3 964 81.2
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1533.5 968 80.2
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1531.5 961 81.0
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1530.8 991 78.5
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1530.8 964 79.4
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1530.8 967 81.0
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1530.4 968 79.6
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1527.7 964 80.5
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1527.3 965 79.2
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1526.9 925 83.8
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1526.9 963 81.0
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1525.0 975 79.5
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1524.6 969 80.3
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1523.5 964 79.6
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1523.5 963 79.8
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1523.1 965 78.8
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1523.1 965 78.5
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1522.7 919 80.8
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1522.3 964 79.4
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1522.3 963 78.7
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1521.9 967 80.0
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1521.9 970 79.1
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1521.9 967 80.2
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1521.5 968 79.9
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1521.1 969 79.9
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1520.0 969 78.0
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1519.2 964 79.3
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1519.2 961 79.6
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1516.9 967 78.2
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1516.1 967 78.1
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1515.7 969 79.4
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1514.2 963 78.3
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1511.9 971 80.2
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1509.2 967 78.8
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1508.8 961 78.8
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1507.7 962 78.3
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1507.3 962 78.5
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1505.7 966 78.0
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1504.6 984 77.6
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1500.7 965 78.4
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1498.8 1187 67.9
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1498.0 962 78.2
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1496.9 963 78.2
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1496.1 969 79.5
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1494.2 972 79.3
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1488.0 927 77.7
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1486.9 967 78.4
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1486.5 971 78.9
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1482.2 962 78.4
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1479.9 973 77.7
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1464.5 927 79.1
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1461.0 960 76.1
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1456.4 975 76.7
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1452.6 965 76.9
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1451.4 962 77.2
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1441.8 983 75.8
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1441.0 985 75.7
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1441.0 985 75.7
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1439.9 909 78.7
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1438.3 990 73.3
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1437.9 970 76.5
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1436.4 913 78.2
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1434.1 963 76.4
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1424.5 971 74.7
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1424.1 843 82.2
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1420.2 969 75.0
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1413.3 966 74.1
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1412.9 836 82.2
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1412.5 962 73.0
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1410.6 972 74.1
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1409.8 978 74.6
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1407.9 981 74.1
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1402.9 964 73.8
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1397.1 970 71.1
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1396.7 969 73.6
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1383.6 961 72.0
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1380.2 959 70.6
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1378.6 928 73.9
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1373.6 975 73.4
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1337.0 925 72.1
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1330.1 917 70.7
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1327.8 966 69.4
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1305.8 784 82.5
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1289.6 786 81.3
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1247.3 726 84.3
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1221.8 926 64.7
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1213.4 781 74.5
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1189.9 981 64.2
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1156.7 695 82.3
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1129.0 959 62.9
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1126.3 985 59.0
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1118.6 982 57.7
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1107.4 967 58.9
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 0.0e+00 1098.2 722 78.1
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 2.9e-302 1042.0 660 79.4
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.8e-283 979.5 789 61.0
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 1.8e-275 953.0 673 73.7
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 5.2e-275 951.4 590 81.2
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.9e-249 865.1 566 76.0
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 2.4e-232 809.7 530 75.8
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 5.6e-221 771.9 604 66.2
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 3.4e-210 736.1 441 84.6
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 7.6e-210 734.9 507 71.8
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 7.2e-184 648.7 408 81.1
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.2e-183 647.9 386 82.4
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 5.3e-179 632.5 1043 38.1
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 2.4e-147 527.3 415 62.7
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 4.3e-144 516.5 420 60.2
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 7.5e-141 505.8 821 38.4
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 4.0e-118 430.3 223 90.6
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 2.9e-116 424.1 483 51.1
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.2e-114 418.7 252 78.2
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 9.6e-112 409.1 1052 28.8
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 2.5e-104 384.4 866 31.8
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 1.1e-99 369.0 279 64.9
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 1.2e-90 339.0 256 66.8
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 7.9e-90 336.3 365 45.2
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 5.7e-88 330.1 253 63.6
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 5.7e-88 330.1 253 63.6
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 9.7e-80 302.8 246 65.9
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 5.9e-61 240.4 148 73.6
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 5.9e-53 213.8 174 54.6
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 2.0e-48 198.7 149 61.1
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 2.0e-48 198.7 149 61.1
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 5.9e-45 187.2 103 85.4
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 7.8e-45 186.8 139 61.2
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.8e-44 184.5 118 73.7
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.4e-41 176.0 248 44.4
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 1.8e-41 175.6 141 55.3
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 2.7e-37 161.8 155 51.0
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 5.0e-36 157.5 99 76.8
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.1e-35 156.4 76 93.4
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.3e-35 154.8 76 92.1
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.3e-35 154.5 75 94.7
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.1e-34 152.1 76 90.8
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.1e-33 148.3 78 87.2
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.0e-33 147.9 74 91.9
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 5.2e-33 147.5 111 64.0
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 5.8e-32 144.1 88 79.5
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 6.4e-31 140.6 131 55.0
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 9.2e-30 136.7 127 57.5
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 6.0e-29 134.0 624 22.9
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 6.0e-29 134.0 78 82.1
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 1.9e-27 129.0 97 66.0
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.0e-25 121.3 65 87.7
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 4.9e-23 114.4 112 48.2
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 1.1e-22 113.2 148 43.2
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.9e-22 112.5 130 50.0
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 3.0e-20 105.1 133 42.9
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 6.4e-15 87.4 82 57.3
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 2.1e-13 82.4 96 47.9
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 1.8e-09 69.3 84 58.3
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 2.4e-09 68.9 39 69.2
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 7.6e-08 63.9 48 58.3
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 2.2e-07 62.4 84 44.0
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 2.4e-06 58.9 42 61.9


User provided reference genes

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