Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 2.0e-249 865.5 515 100.0
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 4.5e-249 864.4 515 99.8
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 2.2e-248 862.1 515 99.6
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 4.6e-238 827.8 504 98.0
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 4.8e-235 817.8 513 90.3
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 7.2e-231 803.9 513 92.0
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 4.7e-230 801.2 515 91.8
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 4.7e-230 801.2 513 92.0
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 6.7e-229 797.3 513 87.5
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 4.4e-228 794.7 515 90.7
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 9.7e-228 793.5 513 91.8
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 2.2e-227 792.3 513 91.0
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 4.8e-227 791.2 515 91.1
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 8.2e-227 790.4 513 90.4
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 1.4e-226 789.6 513 87.1
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 4.1e-226 788.1 513 90.3
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.6e-225 785.4 485 97.3
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 3.4e-225 785.0 510 88.8
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 3.4e-225 785.0 511 87.1
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 5.9e-225 784.3 513 89.5
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 5.9e-225 784.3 513 90.4
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 7.7e-225 783.9 513 90.3
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 7.7e-225 783.9 510 88.0
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 1.0e-224 783.5 527 80.8
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 1.0e-224 783.5 510 88.0
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 3.8e-224 781.6 511 90.0
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 3.8e-224 781.6 513 88.7
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 6.5e-224 780.8 513 89.3
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 2.5e-223 778.9 512 89.1
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 2.5e-223 778.9 510 90.6
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 2.5e-223 778.9 510 91.0
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 2.1e-222 775.8 509 85.9
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 3.6e-222 775.0 513 86.2
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 4.7e-222 774.6 513 89.7
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 8.0e-222 773.9 513 89.1
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.8e-221 772.7 538 85.3
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 2.3e-221 772.3 515 89.3
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 3.9e-221 771.5 515 88.9
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 1.1e-220 770.0 513 86.9
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 7.4e-220 767.3 512 88.3
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 6.3e-219 764.2 513 87.5
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 6.3e-219 764.2 513 86.7
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 8.2e-219 763.8 513 86.5
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 1.1e-218 763.5 511 87.9
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 1.4e-218 763.1 513 87.1
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 2.4e-218 762.3 513 86.5
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 2.4e-218 762.3 511 87.9
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 3.1e-218 761.9 513 88.5
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 7.0e-218 760.8 513 85.8
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 7.0e-218 760.8 511 84.3
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 9.1e-218 760.4 513 86.9
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 9.1e-218 760.4 511 90.6
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 1.2e-217 760.0 515 86.6
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 2.0e-217 759.2 512 87.5
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 2.6e-217 758.8 513 84.8
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 3.5e-217 758.4 513 86.9
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 4.5e-217 758.1 513 84.8
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 4.5e-217 758.1 513 84.8
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 1.0e-216 756.9 504 87.7
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 2.9e-216 755.4 513 85.2
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 2.9e-216 755.4 513 87.1
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 3.8e-216 755.0 513 86.9
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 6.5e-216 754.2 511 87.7
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 1.5e-215 753.1 513 86.7
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 1.5e-215 753.1 512 86.9
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.9e-215 752.7 535 81.7
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 3.2e-215 751.9 512 83.8
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 4.2e-215 751.5 511 83.2
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 7.2e-215 750.7 504 85.9
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 1.6e-214 749.6 514 84.8
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 2.1e-214 749.2 513 86.0
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 3.6e-214 748.4 513 85.8
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 8.0e-214 747.3 512 87.7
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 1.8e-213 746.1 511 85.1
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 1.8e-213 746.1 504 86.5
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 5.2e-213 744.6 511 85.7
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 5.2e-213 744.6 511 81.6
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 5.2e-213 744.6 541 80.6
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 2.0e-212 742.7 484 94.0
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 3.3e-212 741.9 515 83.3
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 1.7e-211 739.6 511 85.1
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 2.8e-211 738.8 513 85.6
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 1.4e-210 736.5 509 85.1
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 1.4e-210 736.5 509 85.1
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 2.4e-210 735.7 513 86.0
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 3.1e-210 735.3 511 84.7
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 4.1e-210 734.9 513 83.6
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 7.0e-210 734.2 513 77.4
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 2.7e-209 732.3 515 84.1
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 5.9e-209 731.1 515 83.7
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 3.2e-207 725.3 513 83.2
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 1.6e-206 723.0 513 78.2
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 2.3e-205 719.2 513 84.0
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 4.4e-204 714.9 500 82.6
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 1.7e-203 713.0 520 82.3
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 3.7e-203 711.8 553 73.1
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 2.3e-197 692.6 515 85.2
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 6.8e-197 691.0 534 76.4
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 2.6e-196 689.1 511 81.4
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 2.8e-195 685.6 556 74.3
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 2.4e-194 682.6 513 79.3
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.4e-194 682.6 513 76.6
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 2.4e-194 682.6 513 78.8
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 1.6e-193 679.9 463 89.8
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 2.7e-193 679.1 467 89.7
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 5.2e-189 664.8 524 77.7
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 4.7e-182 641.7 511 68.7
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 1.7e-179 633.3 435 85.7
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 1.3e-176 623.6 430 89.1
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 5.2e-173 611.7 428 86.2
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 3.8e-163 578.9 511 69.1
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 8.4e-155 551.2 414 82.6
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 2.4e-149 533.1 511 64.8
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 1.3e-142 510.8 270 93.0
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 6.5e-131 471.9 322 89.1
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 7.9e-129 464.9 253 89.7
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 1.9e-122 443.7 313 79.2
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 1.4e-117 427.6 386 62.4
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 4.4e-103 379.4 209 90.9
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 9.7e-103 378.3 209 90.4
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 1.3e-91 341.3 318 71.4
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 5.0e-75 286.2 257 75.9
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 2.5e-74 283.9 517 47.0
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 2.0e-71 274.2 206 79.1
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 4.1e-61 240.0 132 91.7
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 3.3e-58 230.3 526 33.3
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 2.6e-47 194.1 254 42.5
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 4.4e-47 193.4 99 86.9
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.9e-37 161.4 103 76.7
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 5.4e-37 159.8 80 91.2
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.6e-33 148.3 79 92.4
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 4.8e-33 146.7 175 52.6
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 2.2e-30 137.9 137 59.9
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 2.2e-30 137.9 107 70.1
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.3e-27 128.6 295 29.8
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 7.4e-26 122.9 70 81.4
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 3.1e-24 117.5 69 81.2
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 2.6e-23 114.4 64 81.2
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 2.6e-23 114.4 64 81.2
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 1.1e-21 109.0 100 57.0
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 1.1e-21 109.0 100 57.0
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 1.0e-19 102.4 56 80.4
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 2.5e-18 97.8 56 75.0
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.8e-16 91.7 47 95.7
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 3.4e-15 87.4 44 86.4
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 1.2e-12 79.0 87 69.0
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 7.9e-12 76.3 36 91.7
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 7.9e-12 76.3 38 86.8
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 6.7e-11 73.2 105 41.9
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 1.5e-10 72.0 38 81.6
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 5.7e-10 70.1 120 38.3
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 6.5e-06 56.6 35 71.4
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 6.5e-06 56.6 29 79.3


User provided reference genes

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