Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc05g014720.4 Solanum lycopersicum HOM05D002182 ORTHO05D004671 4.3e-84 314.7 167 100.0
Sopen05g009910 Solanum pennellii HOM05D002182 ORTHO05D004671 7.1e-79 297.4 169 94.7
CAN.G163.2 Capsicum annuum HOM05D002182 ORTHO05D004671 2.1e-67 259.2 168 84.5
Nitab4.5_0001277g0010 Nicotiana tabacum HOM05D002182 ORTHO05D004671 1.8e-66 256.1 169 78.7
Oeu050090.2 Olea europaea HOM05D002182 ORTHO05D004671 1.6e-51 206.5 170 61.2
Dinv35485 Davidia involucrata HOM05D002182 ORTHO05D004671 3.4e-49 198.7 173 57.8
Cc07_g19240 Coffea canephora HOM05D002182 ORTHO05D004671 1.0e-48 197.2 168 57.7
Gorai.007G066700 Gossypium raimondii HOM05D002182 ORTHO05D004671 3.5e-46 188.7 169 52.7
GSVIVG01026461001 Vitis vinifera HOM05D002182 ORTHO05D004671 1.0e-45 187.2 178 59.6
Gohir.A11G057700 Gossypium hirsutum HOM05D002182 ORTHO05D004671 1.3e-45 186.8 169 52.1
Gohir.D11G061900 Gossypium hirsutum HOM05D002182 ORTHO05D004671 1.3e-45 186.8 169 52.1
Thecc.01G137400 Theobroma cacao HOM05D002182 ORTHO05D004671 1.1e-44 183.7 174 56.9
Cfa002178 Carpinus fangiana HOM05D002182 ORTHO05D004671 5.7e-44 181.4 179 52.0
Potri.005G067100 Populus trichocarpa HOM05D002182 ORTHO05D004671 1.4e-42 176.8 164 53.7
FvH4_1g24710 Fragaria vesca HOM05D002182 ORTHO05D004671 1.8e-42 176.4 172 58.7
TWI79G1433 Tripterygium wilfordii HOM05D002182 ORTHO05D004671 2.4e-42 176.0 172 52.9
CiPaw.04G079900 Carya illinoinensis HOM05D002182 ORTHO05D004671 3.1e-42 175.6 178 52.2
Duzib264G0915 Durio zibethinus HOM05D002182 ORTHO05D004671 5.3e-42 174.9 173 50.9
MD15G1134700 Malus domestica HOM05D002182 ORTHO05D004671 6.9e-42 174.5 170 54.7
Actinidia20028 Actinidia chinensis HOM05D002182 ORTHO05D004671 9.0e-42 174.1 172 57.0
Ca_16979_v3 Cicer arietinum L. HOM05D002182 ORTHO05D004671 1.2e-41 173.7 179 57.5
Lalb_Chr11g0068591 Lupinus albus HOM05D002182 ORTHO05D004671 4.5e-41 171.8 181 50.3
Rhsim10G0124100 Rhododendron simsii HOM05D002182 ORTHO05D004671 4.5e-41 171.8 173 52.6
COL.COLO4_35815 Corchorus olitorius HOM05D002182 ORTHO05D004671 1.0e-40 170.6 176 55.1
Lj1g0008046 Lotus japonicus HOM05D002182 ORTHO05D004671 1.0e-40 170.6 175 56.0
RcHm_v2.0_Chr2g0122231 Rosa chinensis HOM05D002182 ORTHO05D004671 1.0e-40 170.6 172 56.4
TPR.G33581 Trifolium pratense HOM05D002182 ORTHO05D004671 1.0e-40 170.6 156 62.2
Prupe.4G275500 Prunus persica HOM05D002182 ORTHO05D004671 1.3e-40 170.2 173 57.2
arahy.Tifrunner.gnm1.ann1.K5KUZ3 Arachis hypogaea HOM05D002182 ORTHO05D004671 1.7e-40 169.9 174 50.0
CSS0041549 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D004671 1.7e-40 169.9 170 52.4
arahy.Tifrunner.gnm1.ann1.XVSB6Y Arachis hypogaea HOM05D002182 ORTHO05D004671 2.2e-40 169.5 174 50.0
MELO3C009682.2 Cucumis melo HOM05D002182 ORTHO05D004671 2.9e-40 169.1 182 57.1
vmacro12745 Vaccinium macrocarpon HOM05D002182 ORTHO05D004671 5.0e-40 168.3 181 53.6
CsaV3_3G039390 Cucumis sativus L. HOM05D002182 ORTHO05D004671 6.5e-40 167.9 184 55.4
VMungo1309G0220 Vigna mungo HOM05D002182 ORTHO05D004671 1.9e-39 166.4 173 53.8
Atru.chr4.980 Acer truncatum HOM05D002182 ORTHO05D004671 2.5e-39 166.0 168 50.6
ClCG10G017010 Citrullus lanatus HOM05D002182 ORTHO05D004671 2.5e-39 166.0 172 50.6
CANSAT01G2275 Cannabis sativa HOM05D002182 ORTHO05D004671 5.5e-39 164.9 174 55.2
TAR376G0522 Trochodendron aralioides HOM05D002182 ORTHO05D004671 5.5e-39 164.9 175 58.3
Eucgr.H05141 Eucalyptus grandis HOM05D002182 ORTHO05D004671 7.2e-39 164.5 170 51.2
Aqoxy5G02289 Aquilegia oxysepala HOM05D002182 ORTHO05D004671 9.3e-39 164.1 181 51.9
Phvul.009G154850 Phaseolus vulgaris HOM05D002182 ORTHO05D004671 2.1e-38 162.9 151 55.6
Sc16g0009510 Simmondsia chinensis HOM05D002182 ORTHO05D004671 2.1e-38 162.9 171 52.0
Sed0010212 Sechium edule HOM05D002182 ORTHO05D004671 7.9e-38 161.0 171 57.9
Glyma.06G155600 Glycine max HOM05D002182 ORTHO05D004671 1.8e-37 159.8 173 48.6
PGR102G1182 Punica granatum HOM05D002182 ORTHO05D004671 3.0e-37 159.1 169 58.0
Hund21801 Selenicereus undatus HOM05D002182 ORTHO05D004671 3.9e-37 158.7 173 48.6
Nn5g28440 Nelumbo nucifera HOM05D002182 ORTHO05D004671 1.9e-36 156.4 176 54.0
Manes.13G078050 Manihot esculenta HOM05D002182 ORTHO05D004671 5.7e-36 154.8 167 47.9
Migut.H00803 Erythranthe guttata HOM05D002182 ORTHO05D004671 2.2e-35 152.9 172 51.7
Sabra05G0055200 Salix brachista HOM05D002182 ORTHO05D004671 2.8e-35 152.5 209 41.6
EL10Ac4g09621 Beta vulgaris HOM05D002182 ORTHO05D004671 4.8e-35 151.8 172 52.3
Haze_25328 Corylus avellana HOM05D002182 ORTHO05D017531 6.3e-35 151.4 133 56.4
Ah.06g191020 Amaranthus hybridus HOM05D002182 ORTHO05D004671 1.4e-34 150.2 185 49.7
ATR1001G007 Amborella trichopoda HOM05D002182 ORTHO05D004671 6.9e-34 147.9 171 47.4
MBI07_g43314_MAGBIO Magnolia biondii HOM05D002182 ORTHO05D004671 9.1e-34 147.5 168 45.8
ECA248G2894 Erigeron canadensis HOM05D002182 ORTHO05D004671 1.2e-33 147.1 150 57.3
THA.LOC104818422 Tarenaya hassleriana HOM05D002182 ORTHO05D004671 7.7e-33 144.4 168 53.0
HanXRQChr01g0016921 Helianthus annuus HOM05D002182 ORTHO05D004671 1.1e-31 140.6 178 50.6
Ah.06g191010 Amaranthus hybridus HOM05D002617 ORTHO05D009035 2.5e-31 139.4 179 49.2
Aa31LG1G17970 Aethionema arabicum HOM05D002182 ORTHO05D004671 2.7e-30 136.0 170 50.6
AL8G41160 Arabidopsis lyrata HOM05D002182 ORTHO05D004671 3.6e-30 135.6 162 53.1
Carub.0008s2470 Capsella rubella HOM05D002182 ORTHO05D004671 3.6e-30 135.6 158 51.3
CSS0000135 Camellia sinensis var. sinensis HOM05D002182 ORTHO05D017531 4.7e-30 135.2 116 55.2
AT5G63920 Arabidopsis thaliana HOM05D002182 ORTHO05D004671 7.9e-30 134.4 165 50.3
HPP92_005917 Vanilla planifolia HOM05D002182 ORTHO05D004671 1.4e-29 133.7 173 45.7
Thhalv10003618m.g Eutrema salsugineum HOM05D002182 ORTHO05D004671 5.1e-29 131.7 168 50.0
Lj4C830T7 Lonicera japonica HOM05D002182 ORTHO05D004671 6.7e-29 131.3 103 63.1
A02p43050 Brassica napus HOM05D002182 ORTHO05D004671 1.1e-28 130.6 160 51.2
Medtr3g096640 Medicago truncatula HOM05D002182 ORTHO05D004671 1.5e-28 130.2 213 38.5
C02p63020 Brassica napus HOM05D002182 ORTHO05D017531 2.0e-28 129.8 166 49.4
BraA02t09226Z Brassica rapa HOM05D002182 ORTHO05D004671 2.0e-28 129.8 160 51.2
Sp2g26990 Schrenkiella parvula HOM05D002182 ORTHO05D004671 2.0e-28 129.8 163 50.9
Psat5g060640 Pisum sativum HOM05D002182 ORTHO05D004671 4.8e-27 125.2 155 43.2
BcaC03g18232 Brassica carinata HOM05D002182 ORTHO05D004671 8.2e-27 124.4 166 48.2
PSO384G2582 Papaver somniferum HOM05D002182 ORTHO05D004671 2.4e-26 122.9 196 44.4
PSO443G0075 Papaver somniferum HOM05D002182 ORTHO05D004671 3.1e-26 122.5 197 45.2
BcaB07g29709 Brassica carinata HOM05D002182 ORTHO05D004671 1.2e-25 120.6 177 45.8
CDE09G0036 Ceratophyllum demersum HOM05D000218 ORTHO05D000125 5.0e-24 115.2 124 50.0
Os03g0165000 Oryza sativa ssp. japonica HOM05D002182 ORTHO05D004671 5.7e-20 101.7 136 47.8
Pp3c21_9710 Physcomitrium patens HOM05D002182 ORTHO05D004671 2.8e-19 99.4 200 36.0
SGA_v2.0_scaffold54G19590 Striga asiatica HOM05D002182 ORTHO05D004671 8.2e-19 97.8 93 55.9
FAN26G1134 Fragaria x ananassa HOM05D002182 ORTHO05D004671 1.1e-18 97.4 94 56.4
Zm00001eb005010 Zea mays HOM05D002182 ORTHO05D004671 1.2e-17 94.0 147 43.5
FAN23G2071 Fragaria x ananassa HOM05D002182 ORTHO05D004671 3.8e-16 89.0 90 52.2
Mapoly0113s0011 Marchantia polymorpha HOM05D002182 ORTHO05D004671 1.8e-13 80.1 199 31.2
SHI36070 Sapria himalayana HOM05D002182 ORTHO05D004671 1.5e-12 77.0 42 76.2
AUR62006857 Chenopodium quinoa HOM05D002182 ORTHO05D004671 3.3e-12 75.9 190 31.1
unitig_62.g23375 Utricularia gibba HOM05D002182 ORTHO05D004671 5.3e-10 68.6 108 38.9
AagrBONN_evm.TU.Sc2ySwM_228.5819 Anthoceros agrestis HOM05D002182 ORTHO05D004671 1.6e-09 67.0 91 40.7
SEGI_24428 Sequoiadendron giganteum HOM05D002182 ORTHO05D017531 1.3e-08 63.9 150 31.3
Cpa.g.c33573 Carica papaya HOM05D002182 ORTHO05D017531 6.5e-08 61.6 77 46.8
Lsat_1_v5_gn_1_78841 Lactuca sativa HOM05D002182 ORTHO05D004671 6.5e-08 61.6 41 58.5
FAN19G2097 Fragaria x ananassa HOM05D002182 ORTHO05D004671 1.5e-07 60.5 41 61.0
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 1.9e-07 60.1 97 38.1
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 1.2e-06 57.4 85 37.6
BolC3t18503H Brassica oleracea HOM05D002182 ORTHO05D017531 1.2e-06 57.4 71 42.3
Cre10.g464350 Chlamydomonas reinhardtii HOM05D010091 ORTHO05D012356 1.6e-06 57.0 117 38.5
PRCOL_00006794 Prasinoderma coloniale HOM05D008124 ORTHO05D004072 1.6e-06 57.0 126 31.0
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 3.6e-06 55.8 101 32.7
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 3.6e-06 55.8 103 35.0
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 3.6e-06 55.8 100 31.0
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 3.6e-06 55.8 103 37.9
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 4.7e-06 55.5 80 35.0
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 4.7e-06 55.5 85 32.9
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 6.1e-06 55.1 85 34.1
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 6.1e-06 55.1 99 33.3
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 6.1e-06 55.1 91 35.2


User provided reference genes

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