Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 3.5e-150 535.0 287 100.0
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 7.2e-148 527.3 287 98.6
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 3.6e-147 525.0 287 98.6
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 2.3e-133 479.2 287 91.6
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 2.8e-131 472.2 305 86.2
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 8.0e-123 444.1 296 84.1
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 1.2e-110 403.7 289 77.5
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 1.9e-108 396.4 289 76.8
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 3.3e-108 395.6 289 76.8
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 4.7e-107 391.7 288 74.3
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 1.5e-105 386.7 257 81.7
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 2.6e-105 386.0 266 79.3
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 5.8e-105 384.8 288 74.0
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 7.6e-105 384.4 288 74.3
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 9.9e-105 384.0 288 74.3
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.9e-104 382.5 288 72.9
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.9e-104 382.5 288 72.9
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 2.9e-104 382.5 288 73.3
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 4.9e-104 381.7 288 72.9
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 1.4e-103 380.2 288 72.2
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.9e-103 379.8 286 72.7
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 1.2e-102 377.1 302 70.5
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 2.7e-102 375.9 288 72.2
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 2.7e-102 375.9 288 73.6
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 3.5e-102 375.6 308 69.8
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 3.5e-102 375.6 288 73.3
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 6.0e-102 374.8 288 74.0
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 1.0e-101 374.0 286 72.7
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 1.0e-101 374.0 292 73.6
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 1.0e-101 374.0 288 72.6
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 1.3e-101 373.6 288 71.5
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.3e-101 373.6 289 72.7
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 1.7e-101 373.2 288 71.9
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.5e-100 370.2 290 72.4
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 1.5e-100 370.2 289 72.7
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 2.5e-100 369.4 286 71.7
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 2.5e-100 369.4 289 72.0
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 3.3e-100 369.0 270 74.4
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 6.2e-99 364.8 269 72.9
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 1.1e-98 364.0 288 69.4
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 1.1e-98 364.0 288 71.2
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 1.8e-98 363.2 288 69.4
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 1.8e-98 363.2 288 71.2
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 3.1e-98 362.5 287 70.7
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 4.0e-98 362.1 286 70.3
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 4.0e-98 362.1 288 69.8
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 4.0e-98 362.1 289 72.0
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 5.3e-98 361.7 286 70.6
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 6.9e-98 361.3 286 69.9
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 4.4e-97 358.6 287 70.0
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 4.4e-97 358.6 288 70.1
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 9.9e-97 357.5 293 71.0
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 3.8e-96 355.5 286 72.0
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 6.4e-96 354.8 246 77.6
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 6.4e-96 354.8 242 77.3
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 6.4e-96 354.8 288 68.4
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 2.4e-95 352.8 288 70.8
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 3.2e-95 352.4 288 70.5
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 5.4e-95 351.7 289 69.9
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 5.4e-95 351.7 264 73.5
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 7.1e-95 351.3 288 70.1
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 9.3e-95 350.9 242 76.9
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 9.3e-95 350.9 242 76.9
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 9.3e-95 350.9 287 69.0
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 1.6e-94 350.1 243 77.0
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 1.6e-94 350.1 255 73.3
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.6e-94 350.1 245 75.9
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 1.6e-94 350.1 289 69.9
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 2.1e-94 349.7 289 69.9
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 3.5e-94 349.0 288 70.1
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 4.6e-94 348.6 243 77.0
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 7.8e-94 347.8 242 76.9
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 1.3e-93 347.1 290 70.0
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 1.7e-93 346.7 288 68.4
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 3.0e-93 345.9 281 70.8
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 3.0e-93 345.9 272 71.3
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 5.1e-93 345.1 277 70.8
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 6.6e-93 344.7 270 70.0
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 8.7e-93 344.4 272 69.5
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 1.1e-92 344.0 277 70.4
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 1.9e-92 343.2 242 76.0
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 1.3e-91 340.5 288 68.8
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 2.1e-91 339.7 288 68.8
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 2.8e-91 339.3 242 75.2
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 2.8e-91 339.3 289 70.2
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 3.6e-91 339.0 289 67.1
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 1.1e-90 337.4 286 66.1
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 1.4e-90 337.0 288 66.7
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 1.8e-90 336.7 252 72.6
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 1.8e-90 336.7 252 72.6
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 4.0e-90 335.5 316 64.9
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 5.3e-90 335.1 252 72.2
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 5.3e-90 335.1 242 74.4
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 5.3e-90 335.1 252 72.2
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 9.0e-90 334.3 287 67.6
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 1.2e-89 334.0 242 74.0
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 2.6e-89 332.8 280 66.1
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 3.4e-89 332.4 242 74.0
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 9.9e-89 330.9 243 73.3
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 3.8e-88 328.9 288 65.3
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 4.6e-86 322.0 286 65.7
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 3.9e-85 318.9 286 65.0
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 1.1e-84 317.4 260 69.6
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 2.5e-84 316.2 287 62.0
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 2.1e-83 313.2 260 70.0
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 2.8e-83 312.8 229 80.3
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 6.9e-82 308.1 262 68.3
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 7.9e-78 294.7 288 62.5
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 7.9e-78 294.7 273 61.2
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 3.9e-77 292.4 246 68.3
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 4.8e-75 285.4 211 75.8
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 8.4e-72 274.6 285 58.9
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.0e-69 267.7 264 59.1
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 5.1e-69 265.4 246 61.4
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 5.1e-69 265.4 288 55.9
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 2.2e-67 260.0 153 84.3
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 8.2e-67 258.1 153 83.7
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 1.2e-57 227.6 222 64.4
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.4e-55 220.7 170 68.2
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 4.2e-55 219.2 259 50.2
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 1.2e-54 217.6 205 58.0
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 1.4e-53 214.2 125 85.6
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 9.1e-50 201.4 153 69.9
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 5.5e-47 192.2 153 64.7
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 3.0e-45 186.4 170 61.8
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.8e-43 179.1 170 59.4
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 4.1e-42 176.0 189 57.1
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.2e-41 174.5 156 61.5
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 2.5e-39 166.8 289 43.6
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 7.2e-39 165.2 241 41.9
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.1e-34 151.4 105 71.4
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 3.6e-30 136.3 67 95.5
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 1.4e-21 107.8 142 54.9
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 2.0e-20 104.0 136 55.1
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 7.5e-20 102.1 73 64.4
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.8e-13 80.9 144 43.1
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 8.9e-13 78.6 136 47.1
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 2.6e-12 77.0 42 83.3
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.4e-10 71.2 173 34.1
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 1.9e-07 60.8 73 56.2
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 2.1e-06 57.4 46 67.4


User provided reference genes

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