Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g091440.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 2.5e-39 164.9 77 100.0
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 3.0e-24 114.8 133 52.6
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 3.0e-24 114.8 133 52.6
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 1.9e-23 112.1 133 50.4
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 2.5e-23 111.7 133 51.9
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 4.3e-23 110.9 133 49.6
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 5.7e-23 110.5 133 50.4
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 4.8e-22 107.5 133 49.6
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 3.4e-20 101.3 133 45.9
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 7.6e-20 100.1 132 45.5
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 7.6e-20 100.1 133 46.6
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 1.0e-19 99.8 133 43.6
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.7e-19 99.0 133 44.4
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.7e-19 99.0 133 44.4
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.7e-19 99.0 133 44.4
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 1.7e-19 99.0 133 44.4
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 2.9e-19 98.2 133 45.9
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.9e-19 98.2 133 45.1
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.9e-19 98.2 133 45.1
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 5.0e-19 97.4 133 44.4
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 5.0e-19 97.4 133 43.6
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 6.5e-19 97.1 133 44.4
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 8.5e-19 96.7 133 43.6
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 1.1e-18 96.3 133 45.1
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 1.1e-18 96.3 133 43.6
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 1.1e-18 96.3 133 44.4
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 1.1e-18 96.3 133 45.9
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 1.1e-18 96.3 133 44.4
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 2.5e-18 95.1 133 42.9
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 2.5e-18 95.1 133 44.4
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 3.2e-18 94.7 133 42.9
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 4.2e-18 94.4 133 42.1
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 4.2e-18 94.4 133 42.9
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 4.2e-18 94.4 133 43.6
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 5.5e-18 94.0 133 44.4
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 5.5e-18 94.0 133 43.6
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 5.5e-18 94.0 133 42.9
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 7.2e-18 93.6 133 43.6
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 7.2e-18 93.6 133 42.9
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 9.3e-18 93.2 133 44.4
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 9.3e-18 93.2 133 44.4
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.2e-17 92.8 133 42.9
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 1.6e-17 92.4 133 43.6
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 1.6e-17 92.4 133 42.9
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 1.6e-17 92.4 133 42.9
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 1.6e-17 92.4 133 43.6
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 2.1e-17 92.0 133 42.1
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 2.1e-17 92.0 133 42.1
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 2.1e-17 92.0 133 42.1
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 2.7e-17 91.7 133 42.9
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 2.7e-17 91.7 133 42.9
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 3.6e-17 91.3 133 42.1
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 3.6e-17 91.3 133 42.1
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 3.6e-17 91.3 133 42.1
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 4.6e-17 90.9 131 41.2
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 4.6e-17 90.9 133 42.1
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 6.1e-17 90.5 124 41.1
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 6.1e-17 90.5 133 41.4
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 7.9e-17 90.1 133 39.1
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 1.0e-16 89.7 132 42.4
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 1.0e-16 89.7 133 40.6
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.3e-16 89.4 131 41.2
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 1.3e-16 89.4 131 41.2
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 1.3e-16 89.4 133 42.1
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 2.3e-16 88.6 133 41.4
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 2.3e-16 88.6 133 41.4
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 3.0e-16 88.2 133 41.4
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 3.0e-16 88.2 132 39.4
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 3.9e-16 87.8 133 37.6
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 5.1e-16 87.4 133 42.1
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 5.1e-16 87.4 133 42.1
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 5.1e-16 87.4 133 42.1
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 5.1e-16 87.4 133 42.1
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 5.1e-16 87.4 133 42.1
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 6.7e-16 87.0 133 39.8
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.1e-15 86.3 133 39.1
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.9e-15 85.5 132 40.2
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 2.5e-15 85.1 133 38.3
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 2.5e-15 85.1 134 40.3
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 3.3e-15 84.7 132 40.9
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 5.7e-15 84.0 133 39.8
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 5.7e-15 84.0 133 39.1
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 7.4e-15 83.6 133 39.8
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 9.7e-15 83.2 133 40.6
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 9.7e-15 83.2 133 39.8
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 9.7e-15 83.2 132 37.1
Glyma.17G005802 Glycine max HOM05D004484 ORTHO05D005370 1.3e-14 82.8 102 47.1
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 1.3e-14 82.8 132 38.6
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 1.6e-14 82.4 45 82.2
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 2.2e-14 82.0 134 37.3
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 1.1e-13 79.7 133 38.3
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 1.8e-13 79.0 133 39.1
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 1.8e-13 79.0 133 36.8
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 4.1e-13 77.8 132 37.9
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 5.3e-13 77.4 132 37.9
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 5.3e-13 77.4 132 37.1
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 9.1e-13 76.6 132 36.4
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 9.1e-13 76.6 133 38.3
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 9.1e-13 76.6 133 39.8
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 9.1e-13 76.6 45 75.6
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 1.5e-12 75.9 132 36.4
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 2.0e-12 75.5 132 36.4
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 3.4e-12 74.7 132 36.4
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 3.4e-12 74.7 132 36.4
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 7.7e-12 73.6 123 36.6
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 7.7e-12 73.6 123 36.6
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 1.0e-11 73.2 133 36.8
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 1.0e-11 73.2 133 36.8
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 2.9e-11 71.6 133 33.1
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 3.8e-11 71.2 132 35.6
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 5.0e-11 70.9 55 63.6
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 6.5e-11 70.5 123 34.1
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 6.5e-11 70.5 55 56.4
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 6.5e-11 70.5 123 37.4
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 9.4e-10 66.6 133 37.6
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.2e-09 66.2 123 35.0
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 5.1e-08 60.8 123 33.3
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 1.7e-06 55.8 124 32.3
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 2.2e-06 55.5 115 34.8


User provided reference genes

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