Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g013950.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 6.4e-85 317.4 163 100.0
Solyc01g014420.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.5e-52 209.1 151 76.8
Solyc01g014440.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.0e-34 150.6 187 51.9
Solyc01g012570.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.8e-32 142.5 84 85.7
Solyc01g012670.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 7.0e-31 137.9 182 51.1
Solyc01g013850.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.3e-29 132.9 94 79.8
Solyc01g014400.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.4e-25 119.0 87 74.7
Solyc01g011520.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.0e-21 107.5 65 83.1
Sopen06g015290 Solanum pennellii HOM05D000399 ORTHO05D000304 5.2e-18 95.1 128 46.1
CAN.G321.25 Capsicum annuum HOM05D000399 ORTHO05D000304 8.9e-18 94.4 128 46.1
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 8.9e-18 94.4 128 45.3
Sopen11g004330 Solanum pennellii HOM05D000399 ORTHO05D000304 8.9e-18 94.4 128 46.1
PGSC0003DMG400016641 Solanum tuberosum HOM05D000399 ORTHO05D000304 8.9e-18 94.4 128 46.1
Nitab4.5_0001003g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.5e-17 93.6 128 46.9
Nitab4.5_0019786g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.5e-17 93.6 128 46.1
Solyc11g008540.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.5e-17 93.6 128 45.3
Solyc01g013840.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.0e-17 93.2 54 88.9
Solyc06g048960.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.6e-17 92.8 128 45.3
CAN.G321.26 Capsicum annuum HOM05D000399 ORTHO05D000304 1.7e-16 90.1 128 44.5
Peaxi162Scf00296g00099 Petunia axillaris HOM05D000399 ORTHO05D000304 3.7e-16 89.0 128 45.3
FAN14G3549 Fragaria x ananassa HOM05D000399 ORTHO05D000304 6.4e-16 88.2 128 43.8
FvH4_6g37440 Fragaria vesca HOM05D000399 ORTHO05D000304 1.1e-15 87.4 128 43.8
Solyc11g008520.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.2e-15 85.9 128 44.5
FAN09G4083 Fragaria x ananassa HOM05D000399 ORTHO05D000304 4.1e-15 85.5 128 43.0
Rhsim05G0165200 Rhododendron simsii HOM05D000399 ORTHO05D000304 4.1e-15 85.5 128 41.4
Prupe.6G363600 Prunus persica HOM05D000399 ORTHO05D000304 1.2e-14 84.0 116 42.2
CAN.G59.15 Capsicum annuum HOM05D000399 ORTHO05D000304 2.0e-14 83.2 75 58.7
Atru.chr12.1701 Acer truncatum HOM05D000399 ORTHO05D000304 2.7e-14 82.8 128 41.4
RcHm_v2.0_Chr3g0447571 Rosa chinensis HOM05D000399 ORTHO05D000304 4.6e-14 82.0 128 40.6
Solyc01g012740.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 7.8e-14 81.3 196 33.2
Solyc11g008530.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 7.8e-14 81.3 128 41.4
ECA232G4647 Erigeron canadensis HOM05D000399 ORTHO05D000304 1.0e-13 80.9 128 39.8
QL01p047991 Quercus lobata HOM05D000399 ORTHO05D000304 1.3e-13 80.5 128 39.1
CiPaw.08G112900 Carya illinoinensis HOM05D000399 ORTHO05D000304 2.3e-13 79.7 68 55.9
Solyc01g014450.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.3e-13 79.7 101 43.6
vmacro19543 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 3.0e-13 79.3 80 51.2
Haze_07648 Corylus avellana HOM05D000399 ORTHO05D000304 5.0e-13 78.6 128 39.8
vmacro19578 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 5.0e-13 78.6 80 50.0
Carub.0003s0246 Capsella rubella HOM05D000399 ORTHO05D000304 6.6e-13 78.2 130 38.5
Cfa019273 Carpinus fangiana HOM05D000399 ORTHO05D000304 6.6e-13 78.2 128 39.8
ECA232G2408 Erigeron canadensis HOM05D000399 ORTHO05D000304 6.6e-13 78.2 128 39.1
Ciclev10010911m.g Citrus clementina HOM05D000399 ORTHO05D000304 8.6e-13 77.8 128 39.1
Dinv21364 Davidia involucrata HOM05D000399 ORTHO05D000304 8.6e-13 77.8 80 52.5
Gohir.D05G348400 Gossypium hirsutum HOM05D000399 ORTHO05D000304 8.6e-13 77.8 128 39.8
TWI36G1251 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 8.6e-13 77.8 80 51.2
TAR374G0118 Trochodendron aralioides HOM05D000399 ORTHO05D000304 8.6e-13 77.8 126 38.9
GSVIVG01019052001 Vitis vinifera HOM05D000399 ORTHO05D000304 8.6e-13 77.8 128 39.1
FAN05G1165 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.1e-12 77.4 128 39.1
CANSAT54G0243 Cannabis sativa HOM05D000399 ORTHO05D000304 1.5e-12 77.0 128 39.1
Migut.F01854 Erythranthe guttata HOM05D000399 ORTHO05D000304 1.5e-12 77.0 128 38.3
Oeu034687.1 Olea europaea HOM05D000399 ORTHO05D000304 1.5e-12 77.0 128 39.1
Actinidia34702 Actinidia chinensis HOM05D000399 ORTHO05D000304 1.9e-12 76.6 128 39.1
Cfa006237 Carpinus fangiana HOM05D000399 ORTHO05D000304 1.9e-12 76.6 128 38.3
Cfa006239 Carpinus fangiana HOM05D000399 ORTHO05D000304 1.9e-12 76.6 128 38.3
Ciclev10010912m.g Citrus clementina HOM05D000399 ORTHO05D000304 1.9e-12 76.6 128 38.3
FvH4_6g00200 Fragaria vesca HOM05D000399 ORTHO05D000304 1.9e-12 76.6 128 39.1
FAN09G4699 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.9e-12 76.6 128 39.1
FAN14G1038 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.9e-12 76.6 128 39.1
Gorai.009G374900 Gossypium raimondii HOM05D000399 ORTHO05D000304 1.9e-12 76.6 128 39.1
Lsat_1_v5_gn_0_14701 Lactuca sativa HOM05D000399 ORTHO05D000304 1.9e-12 76.6 128 39.1
Gohir.A04G036700 Gossypium hirsutum HOM05D000399 ORTHO05D000304 2.5e-12 76.3 128 39.1
Sabra10G0139100 Salix brachista HOM05D000399 ORTHO05D000304 2.5e-12 76.3 128 39.8
Actinidia34701 Actinidia chinensis HOM05D000399 ORTHO05D000304 3.3e-12 75.9 128 39.1
MSTRG.8199 Avicennia marina HOM05D000399 ORTHO05D000304 3.3e-12 75.9 128 39.8
Haze_04593 Corylus avellana HOM05D000399 ORTHO05D008029 3.3e-12 75.9 128 37.5
Gohir.A01G133600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.3e-12 75.9 128 39.8
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 4.3e-12 75.5 116 37.9
Cc09_g03980 Coffea canephora HOM05D000399 ORTHO05D000304 4.3e-12 75.5 128 38.3
Duzib251G0658 Durio zibethinus HOM05D000399 ORTHO05D000304 4.3e-12 75.5 128 39.8
Gohir.A04G036500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 4.3e-12 75.5 128 38.3
Gohir.D01G117500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 4.3e-12 75.5 128 39.8
Gorai.002G143000 Gossypium raimondii HOM05D000399 ORTHO05D000304 4.3e-12 75.5 128 39.8
CARHR077330 Cardamine hirsuta HOM05D000399 ORTHO05D000304 5.6e-12 75.1 130 37.7
Sabra08G0056600 Salix brachista HOM05D000399 ORTHO05D000304 5.6e-12 75.1 128 39.1
AT3G03300 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 7.3e-12 74.7 130 37.7
Thhalv10019898m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 7.3e-12 74.7 130 36.9
Lj2C165T13 Lonicera japonica HOM05D000399 ORTHO05D000304 9.5e-12 74.3 128 39.8
PGR031G2252 Punica granatum HOM05D000399 ORTHO05D000304 9.5e-12 74.3 128 35.9
THA.LOC104820849 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 9.5e-12 74.3 82 50.0
arahy.Tifrunner.gnm1.ann1.3LM8QV Arachis hypogaea HOM05D000399 ORTHO05D000304 1.2e-11 73.9 128 39.1
PGR031G1259 Punica granatum HOM05D000399 ORTHO05D000304 1.2e-11 73.9 128 35.9
CiPaw.08G113600 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.6e-11 73.6 80 50.0
CiPaw.08G113700 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.6e-11 73.6 80 50.0
Potri.008G075900 Populus trichocarpa HOM05D000399 ORTHO05D000304 1.6e-11 73.6 128 38.3
AUR62006631 Chenopodium quinoa HOM05D000399 ORTHO05D000304 2.1e-11 73.2 116 37.9
ClCG03G010530 Citrullus lanatus HOM05D000399 ORTHO05D000304 2.1e-11 73.2 128 36.7
CsaV3_1G044420 Cucumis sativus L. HOM05D000399 ORTHO05D000304 2.1e-11 73.2 128 36.7
Duzib268G0367 Durio zibethinus HOM05D000399 ORTHO05D000304 3.6e-11 72.4 128 39.1
Eucgr.B01461 Eucalyptus grandis HOM05D000399 ORTHO05D000304 3.6e-11 72.4 128 38.3
Sc06g0004990 Simmondsia chinensis HOM05D000399 ORTHO05D000304 3.6e-11 72.4 128 35.9
Thecc.05G187300 Theobroma cacao HOM05D000399 ORTHO05D000304 4.7e-11 72.0 128 35.2
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 6.2e-11 71.6 128 37.5
Aa31LG5G13830 Aethionema arabicum HOM05D000399 ORTHO05D000304 6.2e-11 71.6 128 37.5
arahy.Tifrunner.gnm1.ann1.5JB048 Arachis hypogaea HOM05D000399 ORTHO05D000304 6.2e-11 71.6 128 39.1
MELO3C010042.2 Cucumis melo HOM05D000399 ORTHO05D000304 6.2e-11 71.6 116 36.2
Phvul.006G127100 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 6.2e-11 71.6 80 48.8
arahy.Tifrunner.gnm1.ann1.MX0L3B Arachis hypogaea HOM05D000399 ORTHO05D000304 8.0e-11 71.2 145 35.2
Manes.12G002750 Manihot esculenta HOM05D000399 ORTHO05D000304 8.0e-11 71.2 128 35.9
arahy.Tifrunner.gnm1.ann1.02FWCT Arachis hypogaea HOM05D000399 ORTHO05D000304 1.1e-10 70.9 145 35.2
Solyc01g013790.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.1e-10 70.9 77 53.2
TPR.G9044 Trifolium pratense HOM05D000399 ORTHO05D000304 1.1e-10 70.9 116 33.6
AL3G12920 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 1.4e-10 70.5 130 36.2
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 1.4e-10 70.5 131 36.6
AUR62000283 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.4e-10 70.5 116 37.1
Manes.12G003000 Manihot esculenta HOM05D000399 ORTHO05D000304 1.4e-10 70.5 128 35.2
VMungo0540G1266 Vigna mungo HOM05D000399 ORTHO05D000304 1.4e-10 70.5 68 50.0
Aa31LG5G13760 Aethionema arabicum HOM05D000399 ORTHO05D000304 1.8e-10 70.1 128 36.7
BcaC05g29882 Brassica carinata HOM05D000399 ORTHO05D000304 1.8e-10 70.1 131 36.6
A05p43890 Brassica napus HOM05D000399 ORTHO05D000304 1.8e-10 70.1 131 36.6
BolC5t35015H Brassica oleracea HOM05D000399 ORTHO05D000304 1.8e-10 70.1 131 36.6
Ca_00852_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 1.8e-10 70.1 128 34.4
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 1.8e-10 70.1 128 35.9
Lalb_Chr18g0058051 Lupinus albus HOM05D000399 ORTHO05D000304 1.8e-10 70.1 128 36.7
Manes.12G002800 Manihot esculenta HOM05D000399 ORTHO05D000304 1.8e-10 70.1 128 35.9
Solyc01g012550.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.8e-10 70.1 78 51.3
TPR.G26365 Trifolium pratense HOM05D000399 ORTHO05D000304 1.8e-10 70.1 80 45.0
CiPaw.07G083000 Carya illinoinensis HOM05D000399 ORTHO05D000304 2.3e-10 69.7 128 38.3
SHI23152 Sapria himalayana HOM05D000399 ORTHO05D000304 2.3e-10 69.7 128 36.7
Prupe.7G047700 Prunus persica HOM05D000399 ORTHO05D000304 3.1e-10 69.3 147 36.7
Ah.04g159150 Amaranthus hybridus HOM05D000399 ORTHO05D000304 4.0e-10 68.9 116 35.3
Aqoxy3G03689 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 4.0e-10 68.9 116 39.7
Lalb_Chr15g0088811 Lupinus albus HOM05D000399 ORTHO05D000304 4.0e-10 68.9 128 35.9
TPR.G26359 Trifolium pratense HOM05D000399 ORTHO05D000304 4.0e-10 68.9 80 45.0
BraA05t23126Z Brassica rapa HOM05D000399 ORTHO05D000304 5.2e-10 68.6 131 36.6
MD12G1087600 Malus domestica HOM05D000399 ORTHO05D000304 5.2e-10 68.6 80 51.2
arahy.Tifrunner.gnm1.ann1.J1H6RV Arachis hypogaea HOM05D000399 ORTHO05D000304 6.8e-10 68.2 68 47.1
C05p63490 Brassica napus HOM05D000399 ORTHO05D000304 6.8e-10 68.2 131 35.9
Glyma.09G025300 Glycine max HOM05D000399 ORTHO05D000304 8.9e-10 67.8 80 46.2
arahy.Tifrunner.gnm1.ann1.T4IIR2 Arachis hypogaea HOM05D000399 ORTHO05D000304 1.2e-09 67.4 68 47.1
Medtr2g030490 Medicago truncatula HOM05D000399 ORTHO05D000304 1.2e-09 67.4 116 34.5
Solyc01g013920.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.2e-09 67.4 81 45.7
Dinv21369 Davidia involucrata HOM05D000399 ORTHO05D000304 1.5e-09 67.0 59 52.5
Glyma.09G025400 Glycine max HOM05D000399 ORTHO05D000304 2.0e-09 66.6 80 45.0
SalBow6G2829 Salvia bowleyana HOM05D000399 ORTHO05D000304 2.0e-09 66.6 116 37.9
Medtr1g060740 Medicago truncatula HOM05D000399 ORTHO05D000304 2.6e-09 66.2 128 33.6
HanXRQChr16g0511821 Helianthus annuus HOM05D000399 ORTHO05D000304 3.4e-09 65.9 128 35.2
Lalb_Chr20g0120111 Lupinus albus HOM05D000399 ORTHO05D000304 3.4e-09 65.9 128 35.9
Psat1g166800 Pisum sativum HOM05D000399 ORTHO05D000304 3.4e-09 65.9 128 34.4
Prupe.7G047900 Prunus persica HOM05D000399 ORTHO05D000304 3.4e-09 65.9 128 35.9
Solyc01g013930.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.4e-09 65.9 55 58.2
ATR0582G119 Amborella trichopoda HOM05D000399 ORTHO05D000304 4.4e-09 65.5 117 34.2
Lj2g0005366 Lotus japonicus HOM05D000399 ORTHO05D000304 4.4e-09 65.5 118 35.6
Lj6g0009999 Lotus japonicus HOM05D000399 ORTHO05D000304 4.4e-09 65.5 118 35.6
Lj2C166G3 Lonicera japonica HOM05D000399 ORTHO05D000304 5.8e-09 65.1 128 34.4
Potri.010G181400 Populus trichocarpa HOM05D000399 ORTHO05D000304 5.8e-09 65.1 128 35.9
CDE12G0733 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 7.5e-09 64.7 116 34.5
Dinv21363 Davidia involucrata HOM05D000399 ORTHO05D000304 7.5e-09 64.7 128 32.0
Nn4g22037 Nelumbo nucifera HOM05D000399 ORTHO05D000304 7.5e-09 64.7 116 35.3
Psat1g174960 Pisum sativum HOM05D000399 ORTHO05D000304 7.5e-09 64.7 80 43.8
EL10Ac4g10011 Beta vulgaris HOM05D000399 ORTHO05D000304 9.8e-09 64.3 116 35.3
Phvul.006G111800 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 9.8e-09 64.3 148 35.1
VMungo0540G1463 Vigna mungo HOM05D000399 ORTHO05D000304 9.8e-09 64.3 64 48.4
Phvul.006G127200 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.3e-08 63.9 80 45.0
SHI13689 Sapria himalayana HOM05D000399 ORTHO05D000304 1.7e-08 63.5 128 34.4
Solyc01g013860.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.7e-08 63.5 78 47.4
TPR.G29787 Trifolium pratense HOM05D000399 ORTHO05D000304 1.7e-08 63.5 128 32.8
Cc02_g14930 Coffea canephora HOM05D000399 ORTHO05D000304 2.2e-08 63.2 128 36.7
Sopen11g004320 Solanum pennellii HOM05D000399 ORTHO05D000304 2.2e-08 63.2 55 58.2
Gohir.A04G036800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.7e-08 62.4 55 56.4
Phvul.008G129500 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 3.7e-08 62.4 128 33.6
Cc02_g14920 Coffea canephora HOM05D000399 ORTHO05D000304 4.9e-08 62.0 128 37.5
MD04G1247300 Malus domestica HOM05D000399 ORTHO05D000304 4.9e-08 62.0 55 54.5
Hund07367 Selenicereus undatus HOM05D000399 ORTHO05D000304 4.9e-08 62.0 116 33.6
unitig_26.g9215 Utricularia gibba HOM05D000399 ORTHO05D000304 4.9e-08 62.0 112 34.8
Glyma.19G254900 Glycine max HOM05D000399 ORTHO05D000304 6.4e-08 61.6 130 38.5
Solyc01g013780.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 6.4e-08 61.6 35 82.9
VMungo0540G2272 Vigna mungo HOM05D000399 ORTHO05D000304 6.4e-08 61.6 82 47.6
Dinv21368 Davidia involucrata HOM05D000399 ORTHO05D000304 1.1e-07 60.8 54 59.3
VMungo1383G1425 Vigna mungo HOM05D000399 ORTHO05D000304 1.9e-07 60.1 116 32.8
RcHm_v2.0_Chr2g0150271 Rosa chinensis HOM05D000399 ORTHO05D000304 2.4e-07 59.7 48 58.3
vmacro19544 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 2.4e-07 59.7 55 56.4
PSO170G4397 Papaver somniferum HOM05D000399 ORTHO05D000304 4.1e-07 58.9 128 32.8
Solyc01g012590.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 4.1e-07 58.9 54 57.4
Lj1g0009784 Lotus japonicus HOM05D000399 ORTHO05D000304 5.4e-07 58.5 150 30.7
Cc06_g19770 Coffea canephora HOM05D000399 ORTHO05D000304 7.1e-07 58.2 128 34.4
Lj6g0004869 Lotus japonicus HOM05D000399 ORTHO05D000304 7.1e-07 58.2 130 34.6
Cc02_g14910 Coffea canephora HOM05D000399 ORTHO05D000304 2.1e-06 56.6 128 33.6
Prupe.7G048000 Prunus persica HOM05D000399 ORTHO05D000304 2.1e-06 56.6 55 52.7
Dinv21362 Davidia involucrata HOM05D000399 ORTHO05D000304 4.6e-06 55.5 116 31.9
Nitab4.5_0001799g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 4.6e-06 55.5 49 55.1
Solyc01g013910.1 Solanum lycopersicum HOM05D000399 ORTHO05D391584 6.0e-06 55.1 27 92.6
Solyc01g014800.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 6.0e-06 55.1 35 74.3
FAN05G5393 Fragaria x ananassa HOM05D000399 ORTHO05D000304 7.8e-06 54.7 111 36.0
Os03g0583900 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 7.8e-06 54.7 80 35.0
SGA_v2.0_scaffold122G33198 Striga asiatica HOM05D000399 ORTHO05D000304 7.8e-06 54.7 44 59.1


User provided reference genes

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