Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g012610.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.4e-33 145.6 70 100.0
Solyc01g013860.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.8e-28 128.6 70 87.1
Solyc01g012680.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 5.0e-26 120.6 70 82.9
Solyc01g013790.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 8.5e-26 119.8 70 82.9
Solyc01g013810.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.4e-25 119.0 70 82.9
Solyc01g012550.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.0e-22 108.6 63 84.1
Solyc01g013930.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.7e-13 79.0 41 87.8
PGSC0003DMG400016641 Solanum tuberosum HOM05D000399 ORTHO05D000304 2.0e-11 72.0 49 71.4
vmacro19544 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 2.0e-11 72.0 49 69.4
Sopen11g004330 Solanum pennellii HOM05D000399 ORTHO05D000304 2.6e-11 71.6 47 70.2
Sopen06g015290 Solanum pennellii HOM05D000399 ORTHO05D000304 3.5e-11 71.2 49 71.4
QL01p047991 Quercus lobata HOM05D000399 ORTHO05D000304 5.9e-11 70.5 49 67.3
Manes.12G002800 Manihot esculenta HOM05D000399 ORTHO05D000304 7.7e-11 70.1 49 69.4
Solyc06g048960.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.0e-10 69.7 49 69.4
Solyc11g008540.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.0e-10 69.7 47 70.2
Nitab4.5_0001003g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.3e-10 69.3 49 67.3
Nitab4.5_0019786g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.3e-10 69.3 49 67.3
CAN.G321.25 Capsicum annuum HOM05D000399 ORTHO05D000304 1.7e-10 68.9 49 67.3
Manes.12G003000 Manihot esculenta HOM05D000399 ORTHO05D000304 1.7e-10 68.9 49 67.3
Atru.chr12.1701 Acer truncatum HOM05D000399 ORTHO05D000304 2.9e-10 68.2 49 67.3
Prupe.6G363600 Prunus persica HOM05D000399 ORTHO05D000304 2.9e-10 68.2 49 65.3
Sc06g0004990 Simmondsia chinensis HOM05D000399 ORTHO05D000304 2.9e-10 68.2 49 65.3
CAN.G321.26 Capsicum annuum HOM05D000399 ORTHO05D000304 3.8e-10 67.8 47 68.1
Cc09_g03980 Coffea canephora HOM05D000399 ORTHO05D000304 5.0e-10 67.4 49 63.3
Potri.010G181400 Populus trichocarpa HOM05D000399 ORTHO05D000304 8.5e-10 66.6 49 65.3
Solyc01g014440.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 8.5e-10 66.6 49 69.4
CiPaw.08G112900 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.1e-09 66.2 49 63.3
HanXRQChr16g0511821 Helianthus annuus HOM05D000399 ORTHO05D000304 1.1e-09 66.2 49 61.2
FvH4_6g00200 Fragaria vesca HOM05D000399 ORTHO05D000304 1.5e-09 65.9 47 63.8
FAN09G4699 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.5e-09 65.9 47 63.8
FAN14G1038 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.5e-09 65.9 47 63.8
Manes.12G002750 Manihot esculenta HOM05D000399 ORTHO05D000304 1.5e-09 65.9 49 65.3
Sabra10G0139100 Salix brachista HOM05D000399 ORTHO05D000304 1.5e-09 65.9 49 65.3
Ciclev10010912m.g Citrus clementina HOM05D000399 ORTHO05D000304 1.9e-09 65.5 47 63.8
MD04G1247300 Malus domestica HOM05D000399 ORTHO05D000304 1.9e-09 65.5 49 61.2
Solyc01g013780.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.9e-09 65.5 49 67.3
Solyc11g008530.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.9e-09 65.5 47 63.8
Sopen11g004320 Solanum pennellii HOM05D000399 ORTHO05D000304 1.9e-09 65.5 47 63.8
SGA_v2.0_scaffold122G33198 Striga asiatica HOM05D000399 ORTHO05D000304 1.9e-09 65.5 49 63.3
Ciclev10010911m.g Citrus clementina HOM05D000399 ORTHO05D000304 2.5e-09 65.1 47 63.8
Haze_07648 Corylus avellana HOM05D000399 ORTHO05D000304 2.5e-09 65.1 49 61.2
Dinv21364 Davidia involucrata HOM05D000399 ORTHO05D000304 2.5e-09 65.1 49 61.2
Solyc01g013850.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.5e-09 65.1 57 57.9
Solyc11g008520.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.5e-09 65.1 49 61.2
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 2.5e-09 65.1 49 61.2
CAN.G544.3 Capsicum annuum HOM05D000399 ORTHO05D000304 3.2e-09 64.7 49 67.3
Gohir.A04G036800 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.2e-09 64.7 49 61.2
Gohir.D05G348400 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.2e-09 64.7 49 61.2
Gorai.009G374900 Gossypium raimondii HOM05D000399 ORTHO05D000304 3.2e-09 64.7 49 61.2
Solyc01g012740.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.2e-09 64.7 49 67.3
Rhsim05G0165200 Rhododendron simsii HOM05D000399 ORTHO05D000304 4.2e-09 64.3 49 61.2
Sabra08G0056600 Salix brachista HOM05D000399 ORTHO05D000304 4.2e-09 64.3 49 63.3
Actinidia03254 Actinidia chinensis HOM05D000399 ORTHO05D000304 5.5e-09 63.9 46 63.0
Cfa019273 Carpinus fangiana HOM05D000399 ORTHO05D000304 5.5e-09 63.9 49 61.2
Peaxi162Scf00296g00099 Petunia axillaris HOM05D000399 ORTHO05D000304 5.5e-09 63.9 49 61.2
Gohir.A04G036500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 7.2e-09 63.5 49 61.2
Lalb_Chr15g0088811 Lupinus albus HOM05D000399 ORTHO05D000304 7.2e-09 63.5 49 57.1
Lalb_Chr20g0120111 Lupinus albus HOM05D000399 ORTHO05D000304 7.2e-09 63.5 49 57.1
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 9.4e-09 63.2 49 59.2
Glyma.09G025300 Glycine max HOM05D000399 ORTHO05D000304 9.4e-09 63.2 49 59.2
CANSAT54G0243 Cannabis sativa HOM05D000399 ORTHO05D000304 1.2e-08 62.8 47 61.7
Dinv21368 Davidia involucrata HOM05D000399 ORTHO05D000304 1.2e-08 62.8 49 63.3
Glyma.09G025400 Glycine max HOM05D000399 ORTHO05D000304 1.2e-08 62.8 49 59.2
Gohir.A01G133600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.2e-08 62.8 49 59.2
Gohir.D01G117500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.2e-08 62.8 49 59.2
Gorai.002G143000 Gossypium raimondii HOM05D000399 ORTHO05D000304 1.2e-08 62.8 49 59.2
CiPaw.07G083000 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.6e-08 62.4 49 59.2
Oeu034687.1 Olea europaea HOM05D000399 ORTHO05D000304 1.6e-08 62.4 49 59.2
Phvul.006G127100 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.6e-08 62.4 49 57.1
Thecc.05G187300 Theobroma cacao HOM05D000399 ORTHO05D000304 1.6e-08 62.4 49 59.2
Haze_04593 Corylus avellana HOM05D000399 ORTHO05D008029 2.1e-08 62.0 49 59.2
Medtr1g060740 Medicago truncatula HOM05D000399 ORTHO05D000304 2.1e-08 62.0 49 59.2
Medtr8g069975 Medicago truncatula HOM05D000399 ORTHO05D000304 2.1e-08 62.0 49 59.2
Gohir.A04G036700 Gossypium hirsutum HOM05D000399 ORTHO05D000304 2.7e-08 61.6 49 59.2
PGR031G2252 Punica granatum HOM05D000399 ORTHO05D000304 2.7e-08 61.6 47 57.4
Cfa006237 Carpinus fangiana HOM05D000399 ORTHO05D000304 3.6e-08 61.2 49 57.1
ECA232G4647 Erigeron canadensis HOM05D000399 ORTHO05D000304 3.6e-08 61.2 49 53.1
Lsat_1_v5_gn_0_14701 Lactuca sativa HOM05D000399 ORTHO05D000304 3.6e-08 61.2 49 57.1
SHI23152 Sapria himalayana HOM05D000399 ORTHO05D000304 3.6e-08 61.2 49 59.2
TPR.G29787 Trifolium pratense HOM05D000399 ORTHO05D000304 3.6e-08 61.2 49 57.1
GSVIVG01019052001 Vitis vinifera HOM05D000399 ORTHO05D000304 3.6e-08 61.2 47 59.6
Cfa006239 Carpinus fangiana HOM05D000399 ORTHO05D000304 4.7e-08 60.8 49 59.2
FvH4_6g37440 Fragaria vesca HOM05D000399 ORTHO05D000304 4.7e-08 60.8 47 59.6
FAN05G5393 Fragaria x ananassa HOM05D000399 ORTHO05D000304 4.7e-08 60.8 47 59.6
FAN09G4083 Fragaria x ananassa HOM05D000399 ORTHO05D000304 4.7e-08 60.8 47 59.6
FAN14G3549 Fragaria x ananassa HOM05D000399 ORTHO05D000304 4.7e-08 60.8 47 59.6
SalBow6G0953 Salvia bowleyana HOM05D000399 ORTHO05D000304 4.7e-08 60.8 47 57.4
SalBow6G2829 Salvia bowleyana HOM05D000399 ORTHO05D000304 4.7e-08 60.8 47 57.4
TPR.G26365 Trifolium pratense HOM05D000399 ORTHO05D000304 4.7e-08 60.8 49 57.1
Lj2C166G3 Lonicera japonica HOM05D000399 ORTHO05D000304 6.1e-08 60.5 49 55.1
Medtr2g030490 Medicago truncatula HOM05D000399 ORTHO05D000304 6.1e-08 60.5 49 57.1
RcHm_v2.0_Chr3g0447571 Rosa chinensis HOM05D000399 ORTHO05D000304 6.1e-08 60.5 47 59.6
MSTRG.8199 Avicennia marina HOM05D000399 ORTHO05D000304 8.0e-08 60.1 47 57.4
Phvul.008G129500 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 8.0e-08 60.1 49 55.1
VMungo1383G1425 Vigna mungo HOM05D000399 ORTHO05D000304 8.0e-08 60.1 49 53.1
AUR62006631 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.0e-07 59.7 47 59.6
Ca_00852_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 1.0e-07 59.7 49 57.1
Migut.F01854 Erythranthe guttata HOM05D000399 ORTHO05D000304 1.0e-07 59.7 49 55.1
Potri.008G075900 Populus trichocarpa HOM05D000399 ORTHO05D000304 1.0e-07 59.7 49 59.2
AUR62000283 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.4e-07 59.3 47 59.6
Lj2g0005366 Lotus japonicus HOM05D000399 ORTHO05D000304 1.8e-07 58.9 49 51.0
Lj6g0009999 Lotus japonicus HOM05D000399 ORTHO05D000304 1.8e-07 58.9 49 51.0
PGR031G1259 Punica granatum HOM05D000399 ORTHO05D000304 1.8e-07 58.9 47 55.3
TAR374G0118 Trochodendron aralioides HOM05D000399 ORTHO05D000304 1.8e-07 58.9 47 59.6
Actinidia34702 Actinidia chinensis HOM05D000399 ORTHO05D000304 2.3e-07 58.5 46 58.7
PSO170G4397 Papaver somniferum HOM05D000399 ORTHO05D000304 2.3e-07 58.5 47 59.6
Thhalv10019898m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 3.0e-07 58.2 47 57.4
Lalb_Chr18g0058051 Lupinus albus HOM05D000399 ORTHO05D000304 3.0e-07 58.2 49 53.1
Sp6g09960 Schrenkiella parvula HOM05D000399 ORTHO05D000304 3.0e-07 58.2 47 57.4
TPR.G9044 Trifolium pratense HOM05D000399 ORTHO05D000304 3.0e-07 58.2 49 57.1
VMungo0540G1266 Vigna mungo HOM05D000399 ORTHO05D000304 3.0e-07 58.2 49 55.1
MELO3C010042.2 Cucumis melo HOM05D000399 ORTHO05D000304 4.0e-07 57.8 47 53.2
Lj6g0004869 Lotus japonicus HOM05D000399 ORTHO05D000304 4.0e-07 57.8 49 53.1
Solyc01g012670.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 4.0e-07 57.8 49 59.2
Actinidia34701 Actinidia chinensis HOM05D000399 ORTHO05D000304 5.2e-07 57.4 49 53.1
ClCG03G010530 Citrullus lanatus HOM05D000399 ORTHO05D000304 5.2e-07 57.4 47 53.2
ATR0582G119 Amborella trichopoda HOM05D000399 ORTHO05D000304 6.7e-07 57.0 49 57.1
CiPaw.08G113600 Carya illinoinensis HOM05D000399 ORTHO05D000304 6.7e-07 57.0 49 57.1
CsaV3_1G044420 Cucumis sativus L. HOM05D000399 ORTHO05D000304 6.7e-07 57.0 47 53.2
Duzib251G0658 Durio zibethinus HOM05D000399 ORTHO05D000304 6.7e-07 57.0 49 53.1
Duzib268G0367 Durio zibethinus HOM05D000399 ORTHO05D000304 6.7e-07 57.0 49 55.1
Solyc01g014420.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 6.7e-07 57.0 49 61.2
Ah.04g159150 Amaranthus hybridus HOM05D000399 ORTHO05D000304 1.2e-06 56.2 47 53.2
Carub.0003s0246 Capsella rubella HOM05D000399 ORTHO05D000304 1.2e-06 56.2 47 57.4
Eucgr.B01461 Eucalyptus grandis HOM05D000399 ORTHO05D000304 1.2e-06 56.2 49 51.0
TPR.G26359 Trifolium pratense HOM05D000399 ORTHO05D000304 1.2e-06 56.2 49 53.1
TWI36G1251 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 1.2e-06 56.2 47 55.3
CiPaw.08G113700 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.5e-06 55.8 49 57.1
CiPaw.08G113800 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.5e-06 55.8 49 57.1
Phvul.006G127200 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.5e-06 55.8 47 53.2
Solyc01g013840.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.5e-06 55.8 49 61.2
Solyc01g014800.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.5e-06 55.8 49 61.2
THA.LOC104820849 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 1.5e-06 55.8 47 55.3
CDE12G0733 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 2.0e-06 55.5 49 57.1
Os03g0583900 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 2.0e-06 55.5 68 45.6
Aa31LG5G13760 Aethionema arabicum HOM05D000399 ORTHO05D000304 2.6e-06 55.1 47 55.3
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 2.6e-06 55.1 47 55.3
Aa31LG5G13830 Aethionema arabicum HOM05D000399 ORTHO05D000304 2.6e-06 55.1 47 55.3
AL3G12920 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 2.6e-06 55.1 47 55.3
arahy.Tifrunner.gnm1.ann1.T4IIR2 Arachis hypogaea HOM05D000399 ORTHO05D000304 2.6e-06 55.1 49 51.0
SHI13689 Sapria himalayana HOM05D000399 ORTHO05D000304 2.6e-06 55.1 49 51.0
Hund07367 Selenicereus undatus HOM05D000399 ORTHO05D000304 2.6e-06 55.1 47 55.3
AT3G03300 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 3.3e-06 54.7 47 55.3
EL10Ac4g10011 Beta vulgaris HOM05D000399 ORTHO05D000304 3.3e-06 54.7 47 53.2
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 3.3e-06 54.7 43 55.8
CARHR077330 Cardamine hirsuta HOM05D000399 ORTHO05D000304 3.3e-06 54.7 47 55.3
CiPaw.08G113100 Carya illinoinensis HOM05D000399 ORTHO05D000304 3.3e-06 54.7 49 57.1
arahy.Tifrunner.gnm1.ann1.J1H6RV Arachis hypogaea HOM05D000399 ORTHO05D000304 4.4e-06 54.3 49 51.0
Prupe.7G048000 Prunus persica HOM05D000399 ORTHO05D000304 4.4e-06 54.3 49 53.1
HPP92_020099 Vanilla planifolia HOM05D000399 ORTHO05D000304 4.4e-06 54.3 49 53.1
BcaC05g29882 Brassica carinata HOM05D000399 ORTHO05D000304 7.5e-06 53.5 43 55.8
A05p43890 Brassica napus HOM05D000399 ORTHO05D000304 7.5e-06 53.5 43 55.8
C05p63490 Brassica napus HOM05D000399 ORTHO05D000304 7.5e-06 53.5 43 55.8
BolC5t35013H Brassica oleracea HOM05D000399 ORTHO05D000304 7.5e-06 53.5 43 55.8
BolC5t35015H Brassica oleracea HOM05D000399 ORTHO05D000304 7.5e-06 53.5 43 55.8
BraA05t23126Z Brassica rapa HOM05D000399 ORTHO05D000304 7.5e-06 53.5 43 55.8
MD12G1087600 Malus domestica HOM05D000399 ORTHO05D000304 7.5e-06 53.5 47 53.2
Os09g0315100 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 7.5e-06 53.5 48 54.2
Prupe.7G047900 Prunus persica HOM05D000399 ORTHO05D000304 9.7e-06 53.1 49 55.1


User provided reference genes

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