Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g012540.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 9.6e-26 119.4 61 100.0
Solyc01g012580.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 6.9e-24 113.2 61 91.8
Solyc01g011540.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.8e-22 107.5 59 91.5
Solyc01g012650.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.4e-21 105.5 58 89.7
Solyc01g014430.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 7.2e-21 103.2 60 88.3
Solyc01g014450.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.2e-17 91.7 59 81.4
Solyc01g014410.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 9.4e-13 76.3 40 90.0
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 4.6e-12 73.9 59 66.1
CAN.G321.25 Capsicum annuum HOM05D000399 ORTHO05D000304 6.1e-12 73.6 60 65.0
Solyc06g048960.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 6.1e-12 73.6 60 65.0
Solyc11g008540.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 6.1e-12 73.6 60 65.0
Sopen06g015290 Solanum pennellii HOM05D000399 ORTHO05D000304 6.1e-12 73.6 60 65.0
Sopen11g004330 Solanum pennellii HOM05D000399 ORTHO05D000304 6.1e-12 73.6 60 65.0
PGSC0003DMG400016641 Solanum tuberosum HOM05D000399 ORTHO05D000304 6.1e-12 73.6 60 65.0
Solyc11g008520.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.8e-11 72.0 59 64.4
Nitab4.5_0001003g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 5.1e-11 70.5 60 61.7
CAN.G321.26 Capsicum annuum HOM05D000399 ORTHO05D000304 8.8e-11 69.7 60 61.7
Nitab4.5_0019786g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.1e-10 69.3 60 60.0
Peaxi162Scf00296g00099 Petunia axillaris HOM05D000399 ORTHO05D000304 1.1e-10 69.3 60 60.0
MSTRG.8199 Avicennia marina HOM05D000399 ORTHO05D000304 1.5e-10 68.9 59 55.9
Oeu034687.1 Olea europaea HOM05D000399 ORTHO05D000304 1.5e-10 68.9 60 60.0
CARHR077330 Cardamine hirsuta HOM05D000399 ORTHO05D000304 2.0e-10 68.6 59 59.3
Solyc01g013760.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.0e-10 68.6 57 66.7
Atru.chr12.1701 Acer truncatum HOM05D000399 ORTHO05D000304 2.6e-10 68.2 59 57.6
Solyc01g013920.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.6e-10 68.2 59 62.7
Rhsim05G0165200 Rhododendron simsii HOM05D000399 ORTHO05D000304 3.3e-10 67.8 59 57.6
vmacro19543 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 3.3e-10 67.8 59 59.3
Solyc11g008530.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 4.4e-10 67.4 57 63.2
Sopen11g004320 Solanum pennellii HOM05D000399 ORTHO05D000304 5.7e-10 67.0 57 63.2
Lj2C166G3 Lonicera japonica HOM05D000399 ORTHO05D000304 7.4e-10 66.6 60 58.3
Thecc.05G187300 Theobroma cacao HOM05D000399 ORTHO05D000304 9.7e-10 66.2 60 56.7
Lj2C165T13 Lonicera japonica HOM05D000399 ORTHO05D000304 1.3e-09 65.9 59 57.6
GSVIVG01019052001 Vitis vinifera HOM05D000399 ORTHO05D000304 1.3e-09 65.9 60 55.0
Actinidia34701 Actinidia chinensis HOM05D000399 ORTHO05D000304 1.7e-09 65.5 60 55.0
CiPaw.07G083000 Carya illinoinensis HOM05D000399 ORTHO05D000304 2.8e-09 64.7 59 52.5
Cc09_g03980 Coffea canephora HOM05D000399 ORTHO05D000304 2.8e-09 64.7 60 53.3
Dinv21369 Davidia involucrata HOM05D000399 ORTHO05D000304 2.8e-09 64.7 60 55.0
CAN.G829.8 Capsicum annuum HOM05D000399 ORTHO05D002655 3.7e-09 64.3 58 58.6
Thhalv10019898m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 4.8e-09 63.9 59 54.2
QL01p047991 Quercus lobata HOM05D000399 ORTHO05D000304 4.8e-09 63.9 60 53.3
RcHm_v2.0_Chr3g0447571 Rosa chinensis HOM05D000399 ORTHO05D000304 4.8e-09 63.9 59 52.5
Cfa019273 Carpinus fangiana HOM05D000399 ORTHO05D000304 6.3e-09 63.5 60 53.3
Carub.0003s0246 Capsella rubella HOM05D000399 ORTHO05D000304 8.2e-09 63.2 59 54.2
ECA232G2408 Erigeron canadensis HOM05D000399 ORTHO05D000304 8.2e-09 63.2 60 51.7
Lsat_1_v5_gn_0_14701 Lactuca sativa HOM05D000399 ORTHO05D000304 8.2e-09 63.2 60 51.7
Actinidia34702 Actinidia chinensis HOM05D000399 ORTHO05D000304 1.1e-08 62.8 60 53.3
BcaC05g29882 Brassica carinata HOM05D000399 ORTHO05D000304 1.1e-08 62.8 59 52.5
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 1.1e-08 62.8 59 52.5
A05p43890 Brassica napus HOM05D000399 ORTHO05D000304 1.1e-08 62.8 59 52.5
C05p63490 Brassica napus HOM05D000399 ORTHO05D000304 1.1e-08 62.8 59 52.5
BolC5t35013H Brassica oleracea HOM05D000399 ORTHO05D000304 1.1e-08 62.8 59 52.5
BolC5t35015H Brassica oleracea HOM05D000399 ORTHO05D000304 1.1e-08 62.8 59 52.5
BraA05t23126Z Brassica rapa HOM05D000399 ORTHO05D000304 1.1e-08 62.8 59 52.5
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 1.1e-08 62.8 60 53.3
AUR62000283 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.1e-08 62.8 60 51.7
AUR62006631 Chenopodium quinoa HOM05D000399 ORTHO05D000304 1.1e-08 62.8 60 51.7
Haze_07648 Corylus avellana HOM05D000399 ORTHO05D000304 1.1e-08 62.8 60 53.3
ECA232G4647 Erigeron canadensis HOM05D000399 ORTHO05D000304 1.1e-08 62.8 60 50.0
Potri.010G181400 Populus trichocarpa HOM05D000399 ORTHO05D000304 1.1e-08 62.8 60 51.7
Sabra10G0139100 Salix brachista HOM05D000399 ORTHO05D000304 1.1e-08 62.8 60 51.7
CiPaw.08G112900 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.4e-08 62.4 60 51.7
Dinv21364 Davidia involucrata HOM05D000399 ORTHO05D000304 1.4e-08 62.4 60 53.3
PGR031G1259 Punica granatum HOM05D000399 ORTHO05D000304 1.4e-08 62.4 60 51.7
FvH4_6g00200 Fragaria vesca HOM05D000399 ORTHO05D000304 1.8e-08 62.0 60 50.0
FvH4_6g37440 Fragaria vesca HOM05D000399 ORTHO05D000304 1.8e-08 62.0 60 50.0
FAN09G4699 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.8e-08 62.0 60 50.0
FAN14G1038 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.8e-08 62.0 60 50.0
FAN14G3549 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.8e-08 62.0 60 50.0
Cfa006237 Carpinus fangiana HOM05D000399 ORTHO05D000304 2.4e-08 61.6 60 51.7
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 2.4e-08 61.6 60 51.7
FAN09G4083 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.4e-08 61.6 60 50.0
HanXRQChr16g0511821 Helianthus annuus HOM05D000399 ORTHO05D000304 2.4e-08 61.6 60 50.0
Sabra08G0056600 Salix brachista HOM05D000399 ORTHO05D000304 2.4e-08 61.6 59 52.5
Sc06g0004990 Simmondsia chinensis HOM05D000399 ORTHO05D000304 2.4e-08 61.6 60 50.0
FAN05G1165 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.1e-08 61.2 60 48.3
PSO170G4397 Papaver somniferum HOM05D000399 ORTHO05D000304 3.1e-08 61.2 59 50.8
Lalb_Chr18g0058051 Lupinus albus HOM05D000399 ORTHO05D000304 4.1e-08 60.8 60 50.0
Lalb_Chr20g0120111 Lupinus albus HOM05D000399 ORTHO05D000304 4.1e-08 60.8 60 50.0
SalBow8G0416 Salvia bowleyana HOM05D000399 ORTHO05D037505 4.1e-08 60.8 59 50.8
SalBow8G2448 Salvia bowleyana HOM05D000399 ORTHO05D037505 4.1e-08 60.8 59 50.8
SalBow8G3400 Salvia bowleyana HOM05D000399 ORTHO05D037505 4.1e-08 60.8 59 50.8
AL3G12920 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 5.3e-08 60.5 59 54.2
Migut.F01854 Erythranthe guttata HOM05D000399 ORTHO05D000304 5.3e-08 60.5 59 52.5
MD04G1247300 Malus domestica HOM05D000399 ORTHO05D000304 5.3e-08 60.5 59 47.5
Ah.04g159150 Amaranthus hybridus HOM05D000399 ORTHO05D000304 6.9e-08 60.1 60 48.3
AT3G03300 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 6.9e-08 60.1 59 54.2
Gohir.A04G036500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 6.9e-08 60.1 60 51.7
CANSAT54G0243 Cannabis sativa HOM05D000399 ORTHO05D000304 9.1e-08 59.7 59 47.5
Potri.008G075900 Populus trichocarpa HOM05D000399 ORTHO05D000304 9.1e-08 59.7 59 50.8
PGR031G2252 Punica granatum HOM05D000399 ORTHO05D000304 9.1e-08 59.7 59 50.8
Lalb_Chr15g0088811 Lupinus albus HOM05D000399 ORTHO05D000304 1.2e-07 59.3 60 48.3
Medtr1g060740 Medicago truncatula HOM05D000399 ORTHO05D000304 1.2e-07 59.3 60 45.0
Prupe.6G363600 Prunus persica HOM05D000399 ORTHO05D000304 1.2e-07 59.3 59 47.5
unitig_26.g9215 Utricularia gibba HOM05D000399 ORTHO05D000304 1.2e-07 59.3 59 45.8
Duzib251G0658 Durio zibethinus HOM05D000399 ORTHO05D000304 1.5e-07 58.9 60 51.7
Gohir.D01G117500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.5e-07 58.9 60 51.7
Gorai.002G143000 Gossypium raimondii HOM05D000399 ORTHO05D000304 1.5e-07 58.9 60 51.7
Manes.12G002750 Manihot esculenta HOM05D000399 ORTHO05D000304 1.5e-07 58.9 60 50.0
Manes.12G003000 Manihot esculenta HOM05D000399 ORTHO05D000304 1.5e-07 58.9 60 50.0
Aqoxy3G03689 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 2.0e-07 58.5 59 49.2
EL10Ac4g10011 Beta vulgaris HOM05D000399 ORTHO05D000304 2.0e-07 58.5 60 46.7
Ciclev10010912m.g Citrus clementina HOM05D000399 ORTHO05D000304 2.0e-07 58.5 59 50.8
Haze_04593 Corylus avellana HOM05D000399 ORTHO05D008029 2.0e-07 58.5 59 49.2
Gohir.A04G036700 Gossypium hirsutum HOM05D000399 ORTHO05D000304 2.0e-07 58.5 60 51.7
Gohir.D05G348400 Gossypium hirsutum HOM05D000399 ORTHO05D000304 2.0e-07 58.5 60 51.7
Gorai.009G374900 Gossypium raimondii HOM05D000399 ORTHO05D000304 2.0e-07 58.5 60 51.7
Manes.12G002800 Manihot esculenta HOM05D000399 ORTHO05D000304 2.0e-07 58.5 60 50.0
Ciclev10010911m.g Citrus clementina HOM05D000399 ORTHO05D000304 2.6e-07 58.2 60 50.0
Cc02_g14930 Coffea canephora HOM05D000399 ORTHO05D000304 2.6e-07 58.2 60 45.0
SalBow6G0953 Salvia bowleyana HOM05D000399 ORTHO05D000304 2.6e-07 58.2 59 50.8
SalBow6G2829 Salvia bowleyana HOM05D000399 ORTHO05D000304 2.6e-07 58.2 59 50.8
SHI23152 Sapria himalayana HOM05D000399 ORTHO05D000304 2.6e-07 58.2 59 47.5
Aa31LG5G13760 Aethionema arabicum HOM05D000399 ORTHO05D000304 3.4e-07 57.8 59 52.5
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 3.4e-07 57.8 59 52.5
Aa31LG5G13830 Aethionema arabicum HOM05D000399 ORTHO05D000304 3.4e-07 57.8 59 52.5
CDE12G0733 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 3.4e-07 57.8 59 47.5
Ca_00852_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 3.4e-07 57.8 60 45.0
Glyma.09G025400 Glycine max HOM05D000399 ORTHO05D000304 3.4e-07 57.8 60 46.7
Psat1g166800 Pisum sativum HOM05D000399 ORTHO05D000304 3.4e-07 57.8 60 45.0
ATR0582G119 Amborella trichopoda HOM05D000399 ORTHO05D000304 4.5e-07 57.4 59 50.8
Cc06_g19980 Coffea canephora HOM05D000399 ORTHO05D000304 4.5e-07 57.4 56 48.2
Lj6g0004869 Lotus japonicus HOM05D000399 ORTHO05D000304 4.5e-07 57.4 60 43.3
TWI36G1251 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 4.5e-07 57.4 59 49.2
Gohir.A01G133600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 5.9e-07 57.0 60 50.0
Lj2g0005366 Lotus japonicus HOM05D000399 ORTHO05D000304 5.9e-07 57.0 60 43.3
Lj6g0009999 Lotus japonicus HOM05D000399 ORTHO05D000304 5.9e-07 57.0 60 43.3
Nn4g22037 Nelumbo nucifera HOM05D000399 ORTHO05D000304 5.9e-07 57.0 59 50.8
TPR.G29787 Trifolium pratense HOM05D000399 ORTHO05D000304 5.9e-07 57.0 60 41.7
TAR374G0118 Trochodendron aralioides HOM05D000399 ORTHO05D000304 5.9e-07 57.0 59 50.8
arahy.Tifrunner.gnm1.ann1.5JB048 Arachis hypogaea HOM05D000399 ORTHO05D000304 7.7e-07 56.6 60 45.0
ClCG03G010530 Citrullus lanatus HOM05D000399 ORTHO05D000304 7.7e-07 56.6 59 47.5
MELO3C010042.2 Cucumis melo HOM05D000399 ORTHO05D000304 7.7e-07 56.6 59 45.8
Eucgr.B01461 Eucalyptus grandis HOM05D000399 ORTHO05D000304 7.7e-07 56.6 59 52.5
Medtr2g030490 Medicago truncatula HOM05D000399 ORTHO05D000304 7.7e-07 56.6 60 45.0
TPR.G9044 Trifolium pratense HOM05D000399 ORTHO05D000304 7.7e-07 56.6 59 40.7
Cc02_g14920 Coffea canephora HOM05D000399 ORTHO05D000304 1.0e-06 56.2 60 43.3
Duzib268G0367 Durio zibethinus HOM05D000399 ORTHO05D000304 1.0e-06 56.2 60 50.0
THA.LOC104820849 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 1.0e-06 56.2 59 50.8
arahy.Tifrunner.gnm1.ann1.3LM8QV Arachis hypogaea HOM05D000399 ORTHO05D000304 1.3e-06 55.8 60 45.0
arahy.Tifrunner.gnm1.ann1.J1H6RV Arachis hypogaea HOM05D000399 ORTHO05D000304 1.3e-06 55.8 60 48.3
Dinv21363 Davidia involucrata HOM05D000399 ORTHO05D000304 1.3e-06 55.8 59 49.2
Phvul.008G129500 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.3e-06 55.8 60 45.0
Prupe.7G047900 Prunus persica HOM05D000399 ORTHO05D000304 1.3e-06 55.8 56 50.0
VMungo1383G1425 Vigna mungo HOM05D000399 ORTHO05D000304 1.3e-06 55.8 60 45.0
Phvul.006G127100 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.7e-06 55.5 60 45.0
Zm00001eb219700 Zea mays HOM05D000399 ORTHO05D000304 1.7e-06 55.5 59 47.5
arahy.Tifrunner.gnm1.ann1.T4IIR2 Arachis hypogaea HOM05D000399 ORTHO05D000304 2.2e-06 55.1 60 48.3
Cfa006239 Carpinus fangiana HOM05D000399 ORTHO05D000304 2.2e-06 55.1 59 45.8
MBI07_g11056_MAGBIO Magnolia biondii HOM05D000399 ORTHO05D000304 2.2e-06 55.1 59 47.5
VMungo0540G1266 Vigna mungo HOM05D000399 ORTHO05D000304 2.2e-06 55.1 60 45.0
CsaV3_1G044420 Cucumis sativus L. HOM05D000399 ORTHO05D000304 2.9e-06 54.7 59 44.1
Glyma.09G025300 Glycine max HOM05D000399 ORTHO05D000304 2.9e-06 54.7 60 43.3
MD12G1087600 Malus domestica HOM05D000399 ORTHO05D000304 2.9e-06 54.7 57 49.1
Glyma.19G254900 Glycine max HOM05D000399 ORTHO05D000304 3.8e-06 54.3 58 50.0
Phvul.006G127200 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 3.8e-06 54.3 60 43.3
Hund07367 Selenicereus undatus HOM05D000399 ORTHO05D000304 3.8e-06 54.3 60 48.3
CiPaw.08G113600 Carya illinoinensis HOM05D000399 ORTHO05D000304 5.0e-06 53.9 60 46.7
Dinv21362 Davidia involucrata HOM05D000399 ORTHO05D000304 5.0e-06 53.9 60 51.7
MD14G1082800 Malus domestica HOM05D000399 ORTHO05D000304 5.0e-06 53.9 57 49.1
TPR.G26359 Trifolium pratense HOM05D000399 ORTHO05D000304 5.0e-06 53.9 59 42.4
HPP92_020099 Vanilla planifolia HOM05D000399 ORTHO05D000304 5.0e-06 53.9 59 45.8
Prupe.7G048000 Prunus persica HOM05D000399 ORTHO05D000304 6.5e-06 53.5 56 50.0
VMungo0540G1463 Vigna mungo HOM05D000399 ORTHO05D000304 6.5e-06 53.5 60 43.3
Os03g0583900 Oryza sativa ssp. japonica HOM05D000399 ORTHO05D000304 8.5e-06 53.1 59 44.1


User provided reference genes

Program Settings