Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g011520.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 4.7e-58 227.6 113 100.0
Solyc01g014400.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.2e-34 149.8 107 74.8
Solyc01g012670.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 5.2e-33 144.4 108 72.2
Solyc01g012740.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.8e-28 128.3 85 80.0
Solyc01g014440.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.6e-26 121.7 95 69.5
Peaxi162Scf00296g00099 Petunia axillaris HOM05D000399 ORTHO05D000304 1.8e-25 119.4 181 40.9
Sopen11g004310 Solanum pennellii HOM05D000399 ORTHO05D000304 1.8e-25 119.4 181 40.9
CAN.G321.25 Capsicum annuum HOM05D000399 ORTHO05D000304 4.0e-25 118.2 181 41.4
Sopen11g004330 Solanum pennellii HOM05D000399 ORTHO05D000304 5.2e-25 117.9 181 40.9
PGSC0003DMG400016641 Solanum tuberosum HOM05D000399 ORTHO05D000304 5.2e-25 117.9 181 40.9
Solyc01g014420.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.0e-24 115.9 67 85.1
Solyc11g008540.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 3.4e-24 115.2 181 39.8
Nitab4.5_0001003g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 7.5e-24 114.0 180 41.1
Sopen06g015290 Solanum pennellii HOM05D000399 ORTHO05D000304 9.8e-24 113.6 180 40.0
Nitab4.5_0019786g0010 Nicotiana tabacum HOM05D000399 ORTHO05D000304 1.7e-23 112.8 180 41.7
Solyc01g012570.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.9e-23 112.1 67 80.6
Solyc06g048960.4 Solanum lycopersicum HOM05D000399 ORTHO05D000304 4.9e-23 111.3 180 39.4
Solyc11g008520.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 6.4e-23 110.9 181 40.3
Solyc01g013920.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.4e-22 109.8 125 52.0
Solyc01g013950.2 Solanum lycopersicum HOM05D000399 ORTHO05D000304 7.0e-22 107.5 65 83.1
CAN.G321.26 Capsicum annuum HOM05D000399 ORTHO05D000304 9.2e-22 107.1 180 38.9
Solyc11g008530.3 Solanum lycopersicum HOM05D000399 ORTHO05D000304 9.5e-19 97.1 181 35.9
Solyc01g014450.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 6.4e-15 84.3 127 37.8
CAN.G59.15 Capsicum annuum HOM05D000399 ORTHO05D000304 1.1e-14 83.6 64 60.9
FAN14G3549 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.1e-14 83.6 66 59.1
Prupe.6G363600 Prunus persica HOM05D000399 ORTHO05D000304 1.4e-14 83.2 85 48.2
FvH4_6g37440 Fragaria vesca HOM05D000399 ORTHO05D000304 1.9e-14 82.8 66 59.1
ECA232G4647 Erigeron canadensis HOM05D000399 ORTHO05D000304 2.4e-14 82.4 86 47.7
Dinv21364 Davidia involucrata HOM05D000399 ORTHO05D000304 3.2e-14 82.0 180 31.7
FAN09G4083 Fragaria x ananassa HOM05D000399 ORTHO05D000304 3.2e-14 82.0 66 59.1
Rhsim05G0165200 Rhododendron simsii HOM05D000399 ORTHO05D000304 3.2e-14 82.0 81 49.4
CSS0003153 Camellia sinensis var. sinensis HOM05D000399 ORTHO05D000304 4.1e-14 81.6 180 31.1
TAR374G0118 Trochodendron aralioides HOM05D000399 ORTHO05D000304 4.1e-14 81.6 115 37.4
Cfa019273 Carpinus fangiana HOM05D000399 ORTHO05D000304 5.4e-14 81.3 180 33.3
CiPaw.08G112900 Carya illinoinensis HOM05D000399 ORTHO05D000304 5.4e-14 81.3 180 31.1
Solyc01g012730.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.2e-13 80.1 46 84.8
Atru.chr12.1701 Acer truncatum HOM05D000399 ORTHO05D000304 2.0e-13 79.3 64 60.9
Oeu034687.1 Olea europaea HOM05D000399 ORTHO05D000304 2.0e-13 79.3 86 45.3
arahy.Tifrunner.gnm1.ann1.3LM8QV Arachis hypogaea HOM05D000399 ORTHO05D000304 2.7e-13 79.0 107 41.1
CANSAT54G0243 Cannabis sativa HOM05D000399 ORTHO05D000304 2.7e-13 79.0 86 45.3
vmacro19578 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 2.7e-13 79.0 66 54.5
Cfa006237 Carpinus fangiana HOM05D000399 ORTHO05D000304 3.5e-13 78.6 64 57.8
Haze_07648 Corylus avellana HOM05D000399 ORTHO05D000304 3.5e-13 78.6 64 59.4
QL01p047991 Quercus lobata HOM05D000399 ORTHO05D000304 3.5e-13 78.6 64 59.4
GSVIVG01019052001 Vitis vinifera HOM05D000399 ORTHO05D000304 4.6e-13 78.2 86 45.3
arahy.Tifrunner.gnm1.ann1.5JB048 Arachis hypogaea HOM05D000399 ORTHO05D000304 7.8e-13 77.4 107 41.1
ECA232G2408 Erigeron canadensis HOM05D000399 ORTHO05D000304 7.8e-13 77.4 86 45.3
Lsat_1_v5_gn_0_14701 Lactuca sativa HOM05D000399 ORTHO05D000304 7.8e-13 77.4 64 57.8
FAN05G1165 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.0e-12 77.0 66 56.1
Duzib268G0367 Durio zibethinus HOM05D000399 ORTHO05D000304 1.3e-12 76.6 181 30.4
Lj2C165T13 Lonicera japonica HOM05D000399 ORTHO05D000304 1.3e-12 76.6 86 46.5
Carub.0003s0246 Capsella rubella HOM05D000399 ORTHO05D000304 1.7e-12 76.3 66 54.5
Sabra10G0139100 Salix brachista HOM05D000399 ORTHO05D000304 1.7e-12 76.3 180 30.6
vmacro19543 Vaccinium macrocarpon HOM05D000399 ORTHO05D000304 1.7e-12 76.3 66 53.0
Duzib251G0658 Durio zibethinus HOM05D000399 ORTHO05D000304 2.3e-12 75.9 181 30.9
FvH4_6g00200 Fragaria vesca HOM05D000399 ORTHO05D000304 2.3e-12 75.9 66 54.5
FAN09G4699 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.3e-12 75.9 66 54.5
FAN14G1038 Fragaria x ananassa HOM05D000399 ORTHO05D000304 2.3e-12 75.9 66 54.5
Gohir.D01G117500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 2.3e-12 75.9 181 30.4
Gorai.002G143000 Gossypium raimondii HOM05D000399 ORTHO05D000304 2.3e-12 75.9 181 30.4
AUR62006631 Chenopodium quinoa HOM05D000399 ORTHO05D000304 5.0e-12 74.7 114 36.0
Lalb_Chr18g0058051 Lupinus albus HOM05D000399 ORTHO05D000304 5.0e-12 74.7 66 53.0
RcHm_v2.0_Chr3g0447571 Rosa chinensis HOM05D000399 ORTHO05D000304 5.0e-12 74.7 66 53.0
Actinidia34702 Actinidia chinensis HOM05D000399 ORTHO05D000304 6.6e-12 74.3 64 54.7
Potri.008G075900 Populus trichocarpa HOM05D000399 ORTHO05D000304 6.6e-12 74.3 180 28.3
Cfa006239 Carpinus fangiana HOM05D000399 ORTHO05D000304 8.6e-12 73.9 66 54.5
MSTRG.8199 Avicennia marina HOM05D000399 ORTHO05D000304 1.1e-11 73.6 61 57.4
Solyc01g011540.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.1e-11 73.6 45 82.2
Haze_04593 Corylus avellana HOM05D000399 ORTHO05D008029 1.5e-11 73.2 66 53.0
Actinidia34701 Actinidia chinensis HOM05D000399 ORTHO05D000304 1.9e-11 72.8 67 50.7
Ciclev10010911m.g Citrus clementina HOM05D000399 ORTHO05D000304 1.9e-11 72.8 64 53.1
Cc09_g03980 Coffea canephora HOM05D000399 ORTHO05D000304 1.9e-11 72.8 66 51.5
Migut.F01854 Erythranthe guttata HOM05D000399 ORTHO05D000304 1.9e-11 72.8 86 43.0
Thhalv10019898m.g Eutrema salsugineum HOM05D000399 ORTHO05D000304 1.9e-11 72.8 66 51.5
HanXRQChr16g0511821 Helianthus annuus HOM05D000399 ORTHO05D000304 1.9e-11 72.8 86 41.9
SHI23152 Sapria himalayana HOM05D000399 ORTHO05D000304 1.9e-11 72.8 66 54.5
CiPaw.07G083000 Carya illinoinensis HOM05D000399 ORTHO05D000304 2.5e-11 72.4 106 39.6
Gohir.A01G133600 Gossypium hirsutum HOM05D000399 ORTHO05D000304 2.5e-11 72.4 107 39.3
Manes.12G002750 Manihot esculenta HOM05D000399 ORTHO05D000304 2.5e-11 72.4 64 54.7
CARHR077330 Cardamine hirsuta HOM05D000399 ORTHO05D000304 3.3e-11 72.0 66 53.0
AUR62000283 Chenopodium quinoa HOM05D000399 ORTHO05D000304 3.3e-11 72.0 114 35.1
ClCG03G010530 Citrullus lanatus HOM05D000399 ORTHO05D000304 3.3e-11 72.0 86 41.9
Manes.12G002800 Manihot esculenta HOM05D000399 ORTHO05D000304 3.3e-11 72.0 64 54.7
TWI36G1251 Tripterygium wilfordii HOM05D000399 ORTHO05D000304 3.3e-11 72.0 64 51.6
Sabra08G0056600 Salix brachista HOM05D000399 ORTHO05D000304 4.3e-11 71.6 180 27.8
Sc06g0004990 Simmondsia chinensis HOM05D000399 ORTHO05D000304 4.3e-11 71.6 66 48.5
Ciclev10010912m.g Citrus clementina HOM05D000399 ORTHO05D000304 5.6e-11 71.2 59 55.9
Manes.12G003000 Manihot esculenta HOM05D000399 ORTHO05D000304 5.6e-11 71.2 64 53.1
Eucgr.B01461 Eucalyptus grandis HOM05D000399 ORTHO05D000304 7.3e-11 70.9 86 40.7
Gohir.A04G036500 Gossypium hirsutum HOM05D000399 ORTHO05D000304 7.3e-11 70.9 91 40.7
CiPaw.08G113600 Carya illinoinensis HOM05D000399 ORTHO05D000304 9.5e-11 70.5 106 35.8
THA.LOC104820849 Tarenaya hassleriana HOM05D000399 ORTHO05D000304 9.5e-11 70.5 61 55.7
Gohir.D05G348400 Gossypium hirsutum HOM05D000399 ORTHO05D000304 1.2e-10 70.1 66 53.0
TPR.G26365 Trifolium pratense HOM05D000399 ORTHO05D000304 1.2e-10 70.1 64 48.4
arahy.Tifrunner.gnm1.ann1.02FWCT Arachis hypogaea HOM05D000399 ORTHO05D000304 1.6e-10 69.7 90 36.7
arahy.Tifrunner.gnm1.ann1.MX0L3B Arachis hypogaea HOM05D000399 ORTHO05D000304 1.6e-10 69.7 90 36.7
CiPaw.08G113700 Carya illinoinensis HOM05D000399 ORTHO05D000304 1.6e-10 69.7 91 38.5
CDE12G0733 Ceratophyllum demersum HOM05D000399 ORTHO05D000304 1.6e-10 69.7 67 49.3
Lalb_Chr15g0088811 Lupinus albus HOM05D000399 ORTHO05D000304 1.6e-10 69.7 66 50.0
Phvul.006G127100 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.6e-10 69.7 64 50.0
AT3G03300 Arabidopsis thaliana HOM05D000399 ORTHO05D000304 2.1e-10 69.3 66 50.0
MELO3C010042.2 Cucumis melo HOM05D000399 ORTHO05D000304 2.1e-10 69.3 66 50.0
CsaV3_1G044420 Cucumis sativus L. HOM05D000399 ORTHO05D000304 2.1e-10 69.3 66 50.0
Ah.04g159150 Amaranthus hybridus HOM05D000399 ORTHO05D000304 2.8e-10 68.9 66 48.5
Cc02_g14930 Coffea canephora HOM05D000399 ORTHO05D000304 2.8e-10 68.9 86 43.0
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 2.8e-10 68.9 64 51.6
Gorai.009G374900 Gossypium raimondii HOM05D000399 ORTHO05D000304 2.8e-10 68.9 66 51.5
Lalb_Chr20g0120111 Lupinus albus HOM05D000399 ORTHO05D000304 2.8e-10 68.9 66 50.0
Thecc.05G187300 Theobroma cacao HOM05D000399 ORTHO05D000304 2.8e-10 68.9 65 47.7
Ca_00852_v3 Cicer arietinum L. HOM05D000399 ORTHO05D000304 3.6e-10 68.6 87 35.6
Gohir.A04G036700 Gossypium hirsutum HOM05D000399 ORTHO05D000304 3.6e-10 68.6 66 51.5
Medtr1g060740 Medicago truncatula HOM05D000399 ORTHO05D000304 3.6e-10 68.6 87 35.6
PGR031G2252 Punica granatum HOM05D000399 ORTHO05D000304 3.6e-10 68.6 63 49.2
Aa31LG5G13800 Aethionema arabicum HOM05D005923 ORTHO05D000304 4.7e-10 68.2 66 50.0
Aa31LG5G13830 Aethionema arabicum HOM05D000399 ORTHO05D000304 4.7e-10 68.2 66 50.0
EL10Ac4g10011 Beta vulgaris HOM05D000399 ORTHO05D000304 4.7e-10 68.2 66 48.5
BcaC05g29882 Brassica carinata HOM05D000399 ORTHO05D000304 4.7e-10 68.2 67 50.7
BcaC05g30305 Brassica carinata HOM05D000399 ORTHO05D000304 4.7e-10 68.2 67 50.7
A05p43890 Brassica napus HOM05D000399 ORTHO05D000304 4.7e-10 68.2 67 50.7
BolC5t35015H Brassica oleracea HOM05D000399 ORTHO05D000304 4.7e-10 68.2 67 50.7
BraA05t23126Z Brassica rapa HOM05D000399 ORTHO05D000304 4.7e-10 68.2 67 50.7
Cc02_g14920 Coffea canephora HOM05D000399 ORTHO05D000304 4.7e-10 68.2 105 38.1
C05p63490 Brassica napus HOM05D000399 ORTHO05D000304 6.2e-10 67.8 67 49.3
Potri.010G181400 Populus trichocarpa HOM05D000399 ORTHO05D000304 6.2e-10 67.8 180 30.6
PGR031G1259 Punica granatum HOM05D000399 ORTHO05D000304 6.2e-10 67.8 63 49.2
TPR.G9044 Trifolium pratense HOM05D000399 ORTHO05D000304 6.2e-10 67.8 86 37.2
VMungo0540G1266 Vigna mungo HOM05D000399 ORTHO05D000304 6.2e-10 67.8 64 48.4
Aqoxy3G03689 Aquilegia oxysepala HOM05D000399 ORTHO05D000304 8.1e-10 67.4 67 52.2
AL3G12920 Arabidopsis lyrata HOM05D000399 ORTHO05D000304 8.1e-10 67.4 65 49.2
TPR.G29787 Trifolium pratense HOM05D000399 ORTHO05D000304 8.1e-10 67.4 87 36.8
Nn4g22037 Nelumbo nucifera HOM05D000399 ORTHO05D000304 1.1e-09 67.0 86 39.5
Aa31LG5G13760 Aethionema arabicum HOM05D000399 ORTHO05D000304 1.4e-09 66.6 66 48.5
FAN05G5393 Fragaria x ananassa HOM05D000399 ORTHO05D000304 1.4e-09 66.6 138 33.3
Glyma.09G025300 Glycine max HOM05D000399 ORTHO05D000304 1.4e-09 66.6 64 48.4
Lj2C166G3 Lonicera japonica HOM05D000399 ORTHO05D000304 1.4e-09 66.6 64 48.4
Prupe.7G047900 Prunus persica HOM05D000399 ORTHO05D000304 1.4e-09 66.6 66 51.5
Dinv21363 Davidia involucrata HOM05D000399 ORTHO05D000304 1.8e-09 66.2 80 40.0
Medtr2g030490 Medicago truncatula HOM05D000399 ORTHO05D000304 2.3e-09 65.9 87 36.8
Prupe.7G047700 Prunus persica HOM05D000399 ORTHO05D000304 3.1e-09 65.5 66 51.5
Hund07367 Selenicereus undatus HOM05D000399 ORTHO05D000304 3.1e-09 65.5 114 32.5
Glyma.09G025400 Glycine max HOM05D000399 ORTHO05D000304 5.2e-09 64.7 64 45.3
Lj2g0005366 Lotus japonicus HOM05D000399 ORTHO05D000304 5.2e-09 64.7 68 48.5
Lj6g0009999 Lotus japonicus HOM05D000399 ORTHO05D000304 5.2e-09 64.7 68 48.5
arahy.Tifrunner.gnm1.ann1.J1H6RV Arachis hypogaea HOM05D000399 ORTHO05D000304 6.8e-09 64.3 67 44.8
Psat1g166800 Pisum sativum HOM05D000399 ORTHO05D000304 8.9e-09 63.9 87 35.6
Solyc01g013850.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 8.9e-09 63.9 54 64.8
arahy.Tifrunner.gnm1.ann1.T4IIR2 Arachis hypogaea HOM05D000399 ORTHO05D000304 1.2e-08 63.5 67 44.8
SalBow6G2829 Salvia bowleyana HOM05D000399 ORTHO05D000304 1.2e-08 63.5 67 50.7
TPR.G26359 Trifolium pratense HOM05D000399 ORTHO05D000304 1.2e-08 63.5 106 32.1
ATR0582G119 Amborella trichopoda HOM05D000399 ORTHO05D000304 1.5e-08 63.2 107 33.6
Dinv21369 Davidia involucrata HOM05D000399 ORTHO05D000304 1.5e-08 63.2 76 40.8
Phvul.006G127200 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 1.5e-08 63.2 61 49.2
Phvul.008G129500 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 2.0e-08 62.8 64 42.2
VMungo0540G1463 Vigna mungo HOM05D000399 ORTHO05D000304 2.0e-08 62.8 59 49.2
VMungo1383G1425 Vigna mungo HOM05D000399 ORTHO05D000304 2.0e-08 62.8 64 43.8
PSO170G4397 Papaver somniferum HOM05D000399 ORTHO05D000304 2.6e-08 62.4 66 47.0
CAN.G237.2 Capsicum annuum HOM05D000399 ORTHO05D000304 7.5e-08 60.8 113 37.2
Cc02_g14910 Coffea canephora HOM05D000399 ORTHO05D000304 7.5e-08 60.8 95 34.7
Cc06_g19770 Coffea canephora HOM05D000399 ORTHO05D000304 7.5e-08 60.8 95 34.7
MD04G1247300 Malus domestica HOM05D000399 ORTHO05D000304 9.9e-08 60.5 65 44.6
Phvul.006G111800 Phaseolus vulgaris HOM05D000399 ORTHO05D000304 9.9e-08 60.5 86 38.4
Psat1g174960 Pisum sativum HOM05D000399 ORTHO05D000304 9.9e-08 60.5 64 42.2
RcHm_v2.0_Chr2g0150271 Rosa chinensis HOM05D000399 ORTHO05D000304 9.9e-08 60.5 45 62.2
SHI13689 Sapria himalayana HOM05D000399 ORTHO05D000304 1.7e-07 59.7 64 42.2
Solyc01g012650.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 1.7e-07 59.7 35 80.0
Glyma.19G254900 Glycine max HOM05D000399 ORTHO05D000304 2.2e-07 59.3 90 36.7
Lj1g0009784 Lotus japonicus HOM05D000399 ORTHO05D000304 2.2e-07 59.3 92 34.8
Nitab4.5_0001799g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 2.2e-07 59.3 45 60.0
Solyc01g013760.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 2.2e-07 59.3 65 50.8
Lj6g0004869 Lotus japonicus HOM05D000399 ORTHO05D000304 2.9e-07 58.9 93 36.6
MD12G1087600 Malus domestica HOM05D000399 ORTHO05D000304 3.7e-07 58.5 65 49.2
Nitab4.5_0005002g0020 Nicotiana tabacum HOM05D000399 ORTHO05D000304 8.3e-07 57.4 111 35.1
unitig_26.g9215 Utricularia gibba HOM05D000399 ORTHO05D000304 8.3e-07 57.4 59 45.8
Solyc01g012590.1 Solanum lycopersicum HOM05D000399 ORTHO05D000304 4.1e-06 55.1 48 58.3
Sopen11g004320 Solanum pennellii HOM05D000399 ORTHO05D000304 4.1e-06 55.1 33 72.7
VMungo0540G2272 Vigna mungo HOM05D000399 ORTHO05D000304 7.1e-06 54.3 86 36.0


User provided reference genes

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