Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc01g008360.3 Solanum lycopersicum HOM05D006044 ORTHO05D007653 6.2e-64 247.3 124 100.0
Sopen01g003880 Solanum pennellii HOM05D006044 ORTHO05D007653 6.2e-64 247.3 124 100.0
PGSC0003DMG400016393 Solanum tuberosum HOM05D006044 ORTHO05D007653 6.2e-64 247.3 124 100.0
arahy.Tifrunner.gnm1.ann1.6RB8S0 Arachis hypogaea HOM05D006044 ORTHO05D007653 4.9e-61 237.7 125 96.0
arahy.Tifrunner.gnm1.ann1.L4QR06 Arachis hypogaea HOM05D006044 ORTHO05D007653 4.9e-61 237.7 125 96.0
Oeu032567.1 Olea europaea HOM05D006044 ORTHO05D007653 3.2e-60 235.0 128 93.8
Cc03_g11600 Coffea canephora HOM05D006044 ORTHO05D007653 4.2e-60 234.6 127 93.7
Glyma.02G278800 Glycine max HOM05D006044 ORTHO05D007653 4.2e-60 234.6 125 94.4
Lalb_Chr10g0106211 Lupinus albus HOM05D006044 ORTHO05D007653 4.2e-60 234.6 125 94.4
Lalb_Chr17g0347851 Lupinus albus HOM05D006044 ORTHO05D007653 4.2e-60 234.6 125 94.4
Phvul.008G202000 Phaseolus vulgaris HOM05D006044 ORTHO05D007653 4.2e-60 234.6 125 94.4
VMungo0647G0704 Vigna mungo HOM05D006044 ORTHO05D007653 4.2e-60 234.6 125 94.4
Glyma.14G035900 Glycine max HOM05D006044 ORTHO05D007653 5.5e-60 234.2 125 93.6
HanXRQChr07g0196181 Helianthus annuus HOM05D006044 ORTHO05D007653 7.1e-60 233.8 119 95.8
CSS0014603 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 9.3e-60 233.4 125 94.4
Lsat_1_v5_gn_2_28381 Lactuca sativa HOM05D006044 ORTHO05D007653 9.3e-60 233.4 119 95.0
Nitab4.5_0000069g0030 Nicotiana tabacum HOM05D006044 ORTHO05D007653 9.3e-60 233.4 125 93.6
Nitab4.5_0011609g0020 Nicotiana tabacum HOM05D006044 ORTHO05D007653 9.3e-60 233.4 125 93.6
Cfa009890 Carpinus fangiana HOM05D006044 ORTHO05D007653 1.2e-59 233.0 124 92.7
Haze_23252 Corylus avellana HOM05D006044 ORTHO05D007653 1.2e-59 233.0 124 92.7
Lsat_1_v5_gn_2_111680 Lactuca sativa HOM05D006044 ORTHO05D007653 1.2e-59 233.0 119 95.0
Sc12g0010240 Simmondsia chinensis HOM05D006044 ORTHO05D007653 1.6e-59 232.6 125 94.4
TPR.G16400 Trifolium pratense HOM05D006044 ORTHO05D007653 2.1e-59 232.3 119 95.0
unitig_27.g25012 Utricularia gibba HOM05D006044 ORTHO05D007653 2.1e-59 232.3 128 93.0
Cpa.g.sc157.53 Carica papaya HOM05D006044 ORTHO05D007653 2.7e-59 231.9 125 92.8
Peaxi162Scf00021g02522 Petunia axillaris HOM05D006044 ORTHO05D007653 2.7e-59 231.9 125 93.6
CiPaw.14G111700 Carya illinoinensis HOM05D006044 ORTHO05D007653 3.5e-59 231.5 124 91.9
Medtr5g089300 Medicago truncatula HOM05D006044 ORTHO05D007653 3.5e-59 231.5 125 92.8
GSVIVG01037329001 Vitis vinifera HOM05D006044 ORTHO05D007653 3.5e-59 231.5 123 91.9
HanXRQChr14g0453721 Helianthus annuus HOM05D006044 ORTHO05D007653 4.6e-59 231.1 119 94.1
Manes.01G177500 Manihot esculenta HOM05D006044 ORTHO05D007653 4.6e-59 231.1 125 92.8
Psat2g020640 Pisum sativum HOM05D006044 ORTHO05D007653 4.6e-59 231.1 119 94.1
QL01p016848 Quercus lobata HOM05D006044 ORTHO05D007653 4.6e-59 231.1 124 92.7
Atru.chr3.2998 Acer truncatum HOM05D006044 ORTHO05D007653 6.0e-59 230.7 125 92.8
FvH4_4g01940 Fragaria vesca HOM05D006044 ORTHO05D007653 7.9e-59 230.3 125 92.0
FAN12G1761 Fragaria x ananassa HOM05D006044 ORTHO05D007653 7.9e-59 230.3 125 92.0
FAN22G1152 Fragaria x ananassa HOM05D006044 ORTHO05D007653 7.9e-59 230.3 125 92.0
LjContig00564g0010691 Lotus japonicus HOM05D006044 ORTHO05D007653 7.9e-59 230.3 119 94.1
Migut.N02377 Erythranthe guttata HOM05D006044 ORTHO05D007653 1.0e-58 229.9 119 94.1
Nn7g36759 Nelumbo nucifera HOM05D006044 ORTHO05D007653 1.0e-58 229.9 125 92.8
SGA_v2.0_scaffold310G48206 Striga asiatica HOM05D006044 ORTHO05D007653 1.3e-58 229.6 128 92.2
SGA_v2.0_scaffold3G01443 Striga asiatica HOM05D006044 ORTHO05D007653 1.3e-58 229.6 128 92.2
THA.LOC104811201 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 1.3e-58 229.6 125 92.0
Ca_06201_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.8e-58 229.2 119 93.3
Ca_11896_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.8e-58 229.2 125 91.2
SalBow8G2527 Salvia bowleyana HOM05D006044 ORTHO05D007653 1.8e-58 229.2 123 94.3
THA.LOC104799136 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 2.3e-58 228.8 125 92.0
TAR633G2719 Trochodendron aralioides HOM05D006044 ORTHO05D007653 2.3e-58 228.8 125 92.0
MBI19_g20794_MAGBIO Magnolia biondii HOM05D006044 ORTHO05D007653 3.0e-58 228.4 124 91.1
CANSAT11G0073 Cannabis sativa HOM05D006044 ORTHO05D007653 3.9e-58 228.0 119 92.4
Prupe.1G025000 Prunus persica HOM05D006044 ORTHO05D007653 5.1e-58 227.6 125 91.2
RcHm_v2.0_Chr4g0388901 Rosa chinensis HOM05D006044 ORTHO05D007653 5.1e-58 227.6 125 90.4
SalBow1G1993 Salvia bowleyana HOM05D006044 ORTHO05D000010 6.7e-58 227.3 122 94.3
Hma1.2p1_0214F.1_g090800 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 1.1e-57 226.5 123 91.1
Hma1.2p1_1357F.1_g277915 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 1.1e-57 226.5 119 93.3
ATR0763G184 Amborella trichopoda HOM05D006044 ORTHO05D007653 1.5e-57 226.1 125 90.4
CDE09G0744 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 1.5e-57 226.1 124 92.7
Aa31LG3G15040 Aethionema arabicum HOM05D006044 ORTHO05D007653 1.9e-57 225.7 125 91.2
ClCG02G022780 Citrullus lanatus HOM05D006044 ORTHO05D007653 2.5e-57 225.3 126 91.3
COL.COLO4_24488 Corchorus olitorius HOM05D006044 ORTHO05D007653 2.5e-57 225.3 125 89.6
MELO3C014555.2 Cucumis melo HOM05D006044 ORTHO05D007653 2.5e-57 225.3 126 91.3
Gohir.A13G218400 Gossypium hirsutum HOM05D006044 ORTHO05D007653 2.5e-57 225.3 125 90.4
Gohir.D13G222100 Gossypium hirsutum HOM05D006044 ORTHO05D007653 2.5e-57 225.3 125 90.4
Gorai.013G253200 Gossypium raimondii HOM05D006044 ORTHO05D007653 2.5e-57 225.3 125 90.4
PGR102G0082 Punica granatum HOM05D006044 ORTHO05D007653 2.5e-57 225.3 125 90.4
PSO339G3702 Papaver somniferum HOM05D006044 ORTHO05D007653 3.3e-57 224.9 125 90.4
PSO384G3308 Papaver somniferum HOM05D006044 ORTHO05D007653 3.3e-57 224.9 125 90.4
Thecc.09G247200 Theobroma cacao HOM05D006044 ORTHO05D007653 3.3e-57 224.9 125 89.6
Prupe.1G400800 Prunus persica HOM05D006044 ORTHO05D007653 4.3e-57 224.6 125 90.4
unitig_699.g19149 Utricularia gibba HOM05D006044 ORTHO05D007653 4.3e-57 224.6 128 91.4
Pp3c1_15740 Physcomitrium patens HOM05D006044 ORTHO05D007653 5.7e-57 224.2 119 90.8
Potri.001G273200 Populus trichocarpa HOM05D006044 ORTHO05D007653 5.7e-57 224.2 122 91.8
Aqoxy2G00401 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 7.4e-57 223.8 124 89.5
AagrBONN_evm.TU.Sc2ySwM_117.1592 Anthoceros agrestis HOM05D006044 ORTHO05D007653 1.3e-56 223.0 119 90.8
ECA238G3020 Erigeron canadensis HOM05D006044 ORTHO05D007653 1.3e-56 223.0 118 91.5
SEGI_07566 Sequoiadendron giganteum HOM05D006044 ORTHO05D007653 1.3e-56 223.0 125 89.6
TWI75G0655 Tripterygium wilfordii HOM05D006044 ORTHO05D007653 1.3e-56 223.0 125 90.4
Dinv09443 Davidia involucrata HOM05D006044 ORTHO05D007653 2.1e-56 222.2 116 94.8
Ciclev10017186m.g Citrus clementina HOM05D006044 ORTHO05D007653 2.8e-56 221.9 125 88.0
Ah.05g173120 Amaranthus hybridus HOM05D006044 ORTHO05D007653 3.7e-56 221.5 123 90.2
Eucgr.B03747 Eucalyptus grandis HOM05D006044 ORTHO05D007653 3.7e-56 221.5 125 88.0
MD08G1047500 Malus domestica HOM05D006044 ORTHO05D007653 3.7e-56 221.5 125 88.8
Mapoly0207s0011 Marchantia polymorpha HOM05D006044 ORTHO05D007653 3.7e-56 221.5 118 90.7
Potri.009G067500 Populus trichocarpa HOM05D006044 ORTHO05D007653 3.7e-56 221.5 116 92.2
Rhsim13G0207900 Rhododendron simsii HOM05D006044 ORTHO05D007653 3.7e-56 221.5 125 89.6
Nn017s41474 Nelumbo nucifera HOM05D006044 ORTHO05D007653 4.8e-56 221.1 123 89.4
Sabra09G0050500 Salix brachista HOM05D006044 ORTHO05D007653 4.8e-56 221.1 122 89.3
Dinv37467 Davidia involucrata HOM05D006044 ORTHO05D007653 6.2e-56 220.7 116 94.0
EL10Ac1g00766 Beta vulgaris HOM05D006044 ORTHO05D007653 8.2e-56 220.3 123 90.2
EL10Ac5g12840 Beta vulgaris HOM05D006044 ORTHO05D007653 8.2e-56 220.3 123 90.2
CDE08G0916 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 1.4e-55 219.5 119 93.3
HPP92_019149 Vanilla planifolia HOM05D006044 ORTHO05D007653 1.4e-55 219.5 119 89.1
A03p05430 Brassica napus HOM05D006044 ORTHO05D007653 1.8e-55 219.2 125 88.0
C03p06320 Brassica napus HOM05D006044 ORTHO05D007653 1.8e-55 219.2 125 88.0
BolC3t13140H Brassica oleracea HOM05D006044 ORTHO05D007653 1.8e-55 219.2 125 88.0
BraA03t09881Z Brassica rapa HOM05D006044 ORTHO05D007653 1.8e-55 219.2 125 88.0
AL6G22970 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 2.4e-55 218.8 125 88.8
AT5G12190 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 2.4e-55 218.8 125 88.8
A10p25610 Brassica napus HOM05D006044 ORTHO05D007653 2.4e-55 218.8 125 88.8
BraA10t44628Z Brassica rapa HOM05D006044 ORTHO05D007653 2.4e-55 218.8 125 88.8
BcaB01g05427 Brassica carinata HOM05D006044 ORTHO05D007653 3.1e-55 218.4 125 87.2
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 3.1e-55 218.4 125 88.0
Thhalv10015024m.g Eutrema salsugineum HOM05D006044 ORTHO05D007653 3.1e-55 218.4 125 88.0
Sp6g31450 Schrenkiella parvula HOM05D006044 ORTHO05D007653 5.3e-55 217.6 125 87.2
AUR62013740 Chenopodium quinoa HOM05D006044 ORTHO05D007653 9.0e-55 216.9 123 87.8
AUR62023411 Chenopodium quinoa HOM05D006044 ORTHO05D007653 9.0e-55 216.9 123 87.8
Carub.0006s1069 Capsella rubella HOM05D006044 ORTHO05D007653 1.2e-54 216.5 125 88.0
CBR_g501 Chara braunii HOM05D006044 ORTHO05D007653 3.4e-54 214.9 122 86.9
Zm00001eb062150 Zea mays HOM05D006044 ORTHO05D007653 5.8e-54 214.2 119 89.1
Zm00001eb212190 Zea mays HOM05D006044 ORTHO05D007653 7.6e-54 213.8 119 89.1
Os03g0811700 Oryza sativa ssp. japonica HOM05D006044 ORTHO05D007653 1.3e-53 213.0 119 88.2
BcaNung07015 Brassica carinata HOM05D006044 ORTHO05D007653 1.4e-52 209.5 115 89.6
Ca_07394_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.6e-51 206.1 125 84.8
CARHR200930 Cardamine hirsuta HOM05D006044 ORTHO05D007653 1.1e-49 199.9 125 80.8
Aqoxy2G00402 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 1.4e-47 193.0 119 75.6
CSS0031497 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 1.4e-47 193.0 139 74.8
SMO143G0133 Selaginella moellendorffii HOM05D006044 ORTHO05D007653 2.4e-47 192.2 121 79.3
AL3G46680 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 2.2e-45 185.7 116 78.4
Cre03.g158950 Chlamydomonas reinhardtii HOM05D006044 ORTHO05D007653 4.6e-43 177.9 119 70.6
MD13G1049300 Malus domestica HOM05D006044 ORTHO05D007653 7.9e-43 177.2 106 84.0
MCO15G700 Micromonas commoda HOM05D006044 ORTHO05D007653 3.1e-39 165.2 93 83.9
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 4.1e-39 164.9 85 91.8
EL10Ac9g21533 Beta vulgaris HOM05D006044 ORTHO05D007653 1.0e-34 150.2 91 85.7
PRCOL_00006242 Prasinoderma coloniale HOM05D006044 ORTHO05D007653 4.8e-32 141.4 109 59.6
Haze_26695 Corylus avellana HOM05D006044 ORTHO05D007653 6.5e-29 131.0 113 50.4
AT2G14870 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 1.8e-23 112.8 70 72.9
SGA_v2.0_scaffold34G13906 Striga asiatica HOM05D006044 ORTHO05D007653 5.0e-21 104.8 96 57.3
SalBow1G3729 Salvia bowleyana HOM05D006044 ORTHO05D357234 3.7e-16 88.6 42 97.6
SGA_v2.0_scaffold5G02950 Striga asiatica HOM05D006044 ORTHO05D007653 1.1e-15 87.0 76 57.9
SGA_v2.0_scaffold198G41064 Striga asiatica HOM05D006044 ORTHO05D400222 9.8e-09 63.9 102 41.2
Pp3c14_2340 Physcomitrium patens HOM05D006044 ORTHO05D318821 1.1e-07 60.5 31 87.1
Dinv40333 Davidia involucrata HOM05D001413 ORTHO05D001385 5.4e-07 58.2 81 38.3
Gorai.003G183300 Gossypium raimondii HOM05D000142 ORTHO05D003173 9.2e-07 57.4 84 35.7
PGR102G3118 Punica granatum HOM05D002411 ORTHO05D002564 1.2e-06 57.0 83 39.8
COL.COLO4_11167 Corchorus olitorius HOM05D002411 ORTHO05D002564 1.6e-06 56.6 86 34.9
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 1.6e-06 56.6 134 31.3
Glyma.14G115100 Glycine max HOM05D005326 ORTHO05D006734 2.7e-06 55.8 99 31.3
Cc09_g04940 Coffea canephora HOM05D000604 ORTHO05D004856 3.5e-06 55.5 83 37.3
Duzib150G0537 Durio zibethinus HOM05D002411 ORTHO05D002564 3.5e-06 55.5 75 36.0
Duzib168G0560 Durio zibethinus HOM05D002411 ORTHO05D002564 3.5e-06 55.5 75 36.0
MBI14_g02603_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 3.5e-06 55.5 112 33.0
Mapoly0042s0009 Marchantia polymorpha HOM05D000142 ORTHO05D001253 3.5e-06 55.5 96 33.3
Potri.005G024600 Populus trichocarpa HOM05D001413 ORTHO05D001385 3.5e-06 55.5 64 45.3
Thecc.09G359100 Theobroma cacao HOM05D002411 ORTHO05D002564 3.5e-06 55.5 75 36.0
Dinv30820 Davidia involucrata HOM05D001413 ORTHO05D001385 4.5e-06 55.1 86 36.0
Gohir.A03G000053 Gossypium hirsutum HOM05D000142 ORTHO05D003173 4.5e-06 55.1 84 34.5
Lalb_Chr19g0132151 Lupinus albus HOM05D000604 ORTHO05D004856 4.5e-06 55.1 99 30.3
SGA_v2.0_scaffold25G10780 Striga asiatica HOM05D000142 ORTHO05D001253 4.5e-06 55.1 78 35.9
AL1G12240 Arabidopsis lyrata HOM05D001413 ORTHO05D001385 7.7e-06 54.3 74 35.1
A02p24730 Brassica napus HOM05D001413 ORTHO05D001385 7.7e-06 54.3 74 36.5
Cre01.g024200 Chlamydomonas reinhardtii HOM05D004266 ORTHO05D005151 7.7e-06 54.3 88 29.5
Migut.N00441 Erythranthe guttata HOM05D005326 ORTHO05D006734 7.7e-06 54.3 99 33.3
MBI14_g23541_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 7.7e-06 54.3 112 33.0
unitig_699.g19203 Utricularia gibba HOM05D005326 ORTHO05D006734 7.7e-06 54.3 99 30.3


User provided reference genes

Program Settings