Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1877.1 960 100.0
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1749.9 961 92.0
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1746.9 961 91.7
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1562.7 960 82.4
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1561.2 959 82.8
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1557.0 958 82.4
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1552.0 962 82.4
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1550.0 966 81.7
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1545.8 960 80.8
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1545.0 964 80.5
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1540.8 962 80.6
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1540.8 960 82.2
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1540.0 958 80.8
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1538.9 960 80.9
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1538.5 956 80.0
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1537.7 962 81.4
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1537.7 959 81.1
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1536.5 985 80.3
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1536.5 962 80.4
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1533.9 958 80.7
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1533.5 962 81.0
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1533.1 914 83.8
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1530.8 968 81.8
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1530.4 959 80.4
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1530.4 960 80.9
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1529.2 954 82.0
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1526.9 957 80.3
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1526.1 959 81.0
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1524.6 957 80.7
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1523.5 913 81.7
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1522.3 963 80.7
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1521.5 913 82.5
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1521.5 960 80.6
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1521.1 961 80.7
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1519.2 957 80.5
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1518.1 958 80.2
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1512.7 960 80.2
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1512.3 957 80.7
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1511.9 913 81.6
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1511.5 970 79.4
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1510.7 963 80.4
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1510.0 960 79.5
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1508.8 958 80.3
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1508.4 966 81.1
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1508.0 960 80.1
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1507.3 959 78.9
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1505.0 961 79.2
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1504.6 962 79.9
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1500.0 958 78.8
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1500.0 959 79.7
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1499.6 962 79.8
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1498.4 974 77.8
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1494.9 960 78.8
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1494.6 959 79.7
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1494.6 963 78.2
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1491.1 964 79.4
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1490.7 958 78.6
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1486.1 967 79.1
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1483.4 961 77.7
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1481.1 960 77.6
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1475.3 954 78.7
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1473.4 922 79.4
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1473.0 960 78.6
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1473.0 959 77.1
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1471.8 959 77.0
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1467.6 964 78.5
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1459.1 961 78.4
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1455.7 969 77.4
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1451.0 960 77.0
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1448.0 915 77.5
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1446.0 925 75.8
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1444.1 969 76.5
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1442.6 975 74.2
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1440.6 1175 66.0
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1440.2 961 76.4
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1438.7 976 76.3
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1437.6 962 75.2
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1433.7 928 76.6
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1431.4 984 76.0
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1431.4 971 76.8
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1431.0 974 76.5
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1427.9 987 75.8
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1427.9 987 75.8
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1426.8 973 76.0
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1426.4 965 76.0
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1422.9 990 73.2
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1418.3 985 75.2
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1417.1 960 76.7
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1415.6 982 75.4
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1414.8 960 75.8
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1414.1 964 75.5
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1413.3 966 75.1
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1412.5 957 75.0
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1407.1 951 74.9
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1404.4 920 76.2
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1402.9 961 75.7
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1398.6 909 78.3
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1387.9 962 71.8
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1386.3 956 72.7
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1379.0 830 80.8
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1374.4 960 71.4
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1369.8 846 79.2
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1362.1 969 73.3
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1358.6 926 73.4
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1356.7 961 71.0
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1327.0 924 72.0
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1305.0 914 70.1
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1298.9 926 70.7
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1277.3 923 68.3
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1275.0 786 81.2
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1255.0 788 79.2
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1215.3 728 81.9
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1213.7 934 64.1
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 0.0e+00 1210.7 725 86.3
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1167.1 785 72.1
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1150.6 946 61.8
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1126.3 687 80.3
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1121.7 987 60.0
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1120.9 982 58.4
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1089.7 966 59.2
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 6.6e-312 1073.9 957 60.4
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 1.8e-288 996.1 660 76.5
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 5.2e-275 951.4 784 60.5
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 1.4e-272 943.3 674 73.1
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 7.0e-264 914.4 590 78.3
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.0e-246 857.4 559 76.0
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 4.3e-237 825.5 524 78.1
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 1.1e-229 800.8 599 69.1
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 4.5e-218 762.3 500 74.8
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 1.8e-206 723.8 443 84.2
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.8e-180 636.0 386 80.8
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.4e-179 634.4 410 80.0
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 7.0e-171 605.5 1044 37.5
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 2.8e-143 513.8 413 62.2
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 8.0e-143 512.3 417 61.2
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 1.2e-138 498.4 825 37.7
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 2.2e-124 451.1 249 88.8
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 4.3e-120 436.8 483 53.4
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 3.6e-111 407.1 254 78.7
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 5.3e-110 403.3 225 87.1
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 1.1e-104 385.6 1054 27.7
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 5.3e-102 376.7 279 67.7
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.5e-96 358.6 836 32.2
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 1.0e-89 335.9 253 66.0
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 1.0e-89 335.9 253 66.0
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 3.9e-89 334.0 365 46.0
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 2.6e-77 294.7 286 57.7
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 1.6e-53 215.7 150 72.0
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.0e-49 203.0 241 49.4
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.8e-49 202.2 169 52.7
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 4.8e-47 194.1 149 61.7
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 4.8e-47 194.1 149 61.7
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 1.0e-44 186.4 139 63.3
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 4.7e-42 177.6 170 51.2
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.4e-41 176.0 118 70.3
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 1.7e-39 169.1 103 79.6
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 1.8e-38 165.6 141 53.2
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 9.2e-38 163.3 99 79.8
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.6e-37 162.5 111 72.1
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.1e-34 152.1 76 86.8
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 6.1e-34 150.6 76 85.5
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 8.0e-34 150.2 75 88.0
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.4e-33 149.4 76 85.5
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 2.3e-33 148.7 131 59.5
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 1.5e-32 146.0 98 75.5
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.8e-32 144.1 78 80.8
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.8e-32 144.1 74 85.1
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 5.8e-32 144.1 88 78.4
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 4.1e-30 137.9 145 49.7
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 3.0e-28 131.7 626 24.1
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 2.8e-26 125.2 109 53.2
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 4.7e-26 124.4 119 49.6
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.1e-25 123.2 65 87.7
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 1.4e-25 122.9 82 75.6
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 6.4e-23 114.0 130 50.8
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 9.2e-22 110.2 129 47.3
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 3.7e-15 88.2 87 54.0
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 3.9e-12 78.2 131 41.2
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 5.1e-12 77.8 58 67.2
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 6.8e-09 67.4 190 30.0
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 8.9e-09 67.0 46 60.9
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 1.3e-07 63.2 42 66.7


User provided reference genes

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