Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 2.7e-272 941.4 483 100.0
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 7.3e-185 651.0 454 78.0
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 5.4e-180 634.8 457 76.8
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 2.5e-177 625.9 458 77.1
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 1.1e-151 540.8 461 64.6
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 5.1e-146 521.9 465 63.0
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 1.5e-145 520.4 457 63.2
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 7.4e-145 518.1 450 63.1
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 8.2e-144 514.6 467 60.8
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 1.4e-143 513.8 463 61.3
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 6.9e-143 511.5 440 64.8
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 1.0e-141 507.7 460 61.3
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 2.9e-141 506.1 463 61.6
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 8.4e-141 504.6 461 62.5
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.2e-140 502.3 460 60.7
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 5.5e-140 501.9 458 61.1
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.6e-139 500.4 462 61.3
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 3.5e-139 499.2 460 60.7
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 1.0e-138 497.7 482 60.0
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 1.0e-138 497.7 482 60.0
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.0e-138 497.7 462 61.5
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.3e-138 496.5 467 60.6
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 6.7e-138 495.0 464 60.6
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 6.7e-138 495.0 464 60.6
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 4.3e-137 492.3 470 60.2
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 5.7e-137 491.9 445 62.7
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 5.7e-137 491.9 456 61.2
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 7.4e-137 491.5 453 62.0
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 9.7e-137 491.1 458 60.3
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 1.6e-136 490.3 462 62.6
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 2.2e-136 490.0 457 60.6
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.8e-136 489.6 464 60.3
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.7e-136 489.2 464 59.9
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 6.3e-136 488.4 467 59.5
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 1.4e-135 487.3 461 60.5
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 5.3e-135 485.3 464 59.7
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 6.9e-135 485.0 462 60.4
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.0e-134 483.4 471 59.2
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 2.0e-134 483.4 442 63.8
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 2.0e-134 483.4 458 60.7
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 5.9e-134 481.9 463 59.8
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 1.3e-133 480.7 462 60.0
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 5.0e-133 478.8 462 59.3
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 8.5e-133 478.0 453 60.7
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 3.2e-132 476.1 463 58.7
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 9.4e-132 474.6 460 58.9
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 1.2e-131 474.2 467 58.7
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 1.2e-131 474.2 457 59.3
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 2.7e-131 473.0 467 60.4
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 2.7e-131 473.0 448 59.8
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 2.7e-131 473.0 455 59.3
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 6.1e-131 471.9 467 58.2
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 2.3e-130 469.9 467 57.8
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 3.9e-130 469.2 467 58.9
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 2.0e-129 466.8 459 58.8
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 1.7e-128 463.8 466 58.8
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 3.7e-128 462.6 441 60.5
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 1.8e-127 460.3 459 58.4
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 4.5e-126 455.7 446 60.3
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 1.7e-125 453.8 455 58.2
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 6.5e-125 451.8 454 58.4
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 8.5e-125 451.4 516 54.8
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 1.9e-124 450.3 447 58.6
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 5.5e-124 448.7 445 59.1
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 1.6e-123 447.2 444 57.9
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 2.1e-123 446.8 447 59.1
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 2.1e-123 446.8 447 58.8
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 4.7e-123 445.7 444 57.9
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 6.1e-123 445.3 447 58.8
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 1.0e-122 444.5 463 56.2
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 2.3e-122 443.4 447 58.6
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 3.9e-122 442.6 444 57.9
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 3.9e-122 442.6 443 58.7
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 3.9e-122 442.6 468 56.8
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 3.9e-122 442.6 459 58.6
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 7.4e-121 438.3 413 60.0
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 1.3e-120 437.6 476 55.7
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 4.8e-120 435.6 447 57.7
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 8.2e-120 434.9 460 55.7
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 9.1e-119 431.4 457 54.7
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.2e-118 431.0 456 55.5
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 3.5e-118 429.5 544 49.8
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.3e-117 427.6 450 56.9
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 6.5e-117 425.2 470 54.0
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 1.1e-116 424.5 467 54.2
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 5.5e-116 422.2 421 59.6
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 1.4e-114 417.5 417 59.2
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 1.3e-112 411.0 458 55.0
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 1.6e-110 404.1 445 54.2
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 2.2e-109 400.2 457 53.4
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 4.0e-106 389.4 442 52.7
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 3.3e-105 386.3 443 52.4
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 4.1e-103 379.4 438 52.1
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 5.0e-101 372.5 280 73.2
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 4.7e-99 365.9 467 48.6
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 1.0e-98 364.8 366 57.4
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 2.0e-97 360.5 364 56.6
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 3.5e-94 349.7 462 48.5
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 2.3e-93 347.1 284 66.2
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 2.6e-89 333.6 440 46.8
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.3e-88 331.3 283 64.3
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 1.7e-88 330.9 269 66.2
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 2.2e-88 330.5 408 47.8
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 8.3e-88 328.6 443 44.0
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 1.1e-87 328.2 461 46.9
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 1.5e-84 317.8 344 54.1
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 5.6e-84 315.8 268 64.9
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 7.5e-81 305.4 440 47.7
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 2.4e-79 300.4 212 73.6
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 9.2e-79 298.5 417 46.5
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 1.1e-76 291.6 373 48.3
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 7.5e-73 278.9 310 52.9
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 6.0e-70 269.2 493 37.7
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 1.4e-66 258.1 319 49.2
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 1.7e-56 224.6 292 51.7
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 8.4e-56 222.2 215 58.6
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 1.0e-53 215.3 216 59.3
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 4.3e-52 209.9 395 38.7
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.3e-48 198.4 279 48.4
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.9e-47 194.5 278 44.2
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 1.2e-46 191.8 200 55.5
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 3.4e-41 173.7 150 58.0
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 6.4e-40 169.5 276 39.5
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 2.4e-39 167.5 441 30.2
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 7.1e-39 166.0 264 42.8
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 1.6e-38 164.9 193 52.3
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 7.9e-38 162.5 188 51.6
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 1.3e-35 155.2 84 85.7
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 1.2e-33 148.7 243 37.4
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 2.6e-25 120.9 81 74.1
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 3.4e-25 120.6 67 86.6
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 1.3e-24 118.6 94 68.1
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 1.2e-22 112.1 92 60.9
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 1.2e-22 112.1 64 82.8
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 2.3e-21 107.8 79 63.3
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 2.6e-17 94.4 92 57.6
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 8.5e-16 89.4 69 71.0
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 8.5e-16 89.4 273 28.9
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 9.4e-15 85.9 84 59.5
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 4.3e-12 77.0 161 34.8
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 4.3e-12 77.0 82 54.9
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 3.1e-10 70.9 148 33.8
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 4.1e-10 70.5 105 41.9
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 5.5e-07 60.1 36 80.6
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 7.2e-07 59.7 64 56.2


User provided reference genes

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