Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 4.8e-259 897.5 514 100.0
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 5.4e-255 884.0 514 98.1
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 7.6e-249 863.6 509 96.1
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 1.5e-241 839.3 511 93.7
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 4.2e-239 831.2 510 92.9
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 6.0e-238 827.4 514 90.9
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 8.7e-237 823.5 510 92.4
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 8.7e-237 823.5 510 91.8
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 3.4e-233 811.6 511 90.4
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 1.3e-232 809.7 514 89.9
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 2.9e-232 808.5 513 89.5
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 1.4e-231 806.2 514 90.7
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 4.2e-231 804.7 514 87.9
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 5.5e-231 804.3 511 89.4
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 5.5e-231 804.3 514 89.5
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 2.1e-230 802.4 514 90.3
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 6.1e-230 800.8 514 88.7
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 6.1e-230 800.8 514 88.7
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 5.1e-229 797.7 527 82.7
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.7e-227 792.7 510 89.8
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 1.4e-226 789.6 512 87.9
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 2.4e-226 788.9 511 87.9
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 5.3e-226 787.7 511 87.9
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 6.9e-226 787.3 511 89.4
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 6.9e-226 787.3 542 84.3
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 6.9e-226 787.3 514 87.4
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 9.1e-226 786.9 514 88.3
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 9.1e-226 786.9 510 89.4
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 2.0e-225 785.8 513 87.3
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 2.0e-225 785.8 514 87.2
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 2.6e-225 785.4 514 87.7
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 4.5e-225 784.6 514 87.9
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 1.0e-224 783.5 514 87.9
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 1.3e-224 783.1 514 87.9
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 6.5e-224 780.8 514 87.5
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 6.5e-224 780.8 513 87.3
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 8.5e-224 780.4 514 87.0
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 8.5e-224 780.4 513 87.7
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 5.5e-223 777.7 514 87.5
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 1.2e-222 776.5 514 85.2
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 1.2e-222 776.5 514 87.0
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 2.1e-222 775.8 512 87.3
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 1.8e-221 772.7 512 87.5
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 1.8e-221 772.7 513 86.4
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 3.0e-221 771.9 513 86.4
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 5.1e-221 771.2 513 86.5
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 8.8e-221 770.4 513 86.2
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 2.6e-220 768.8 514 86.2
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 2.6e-220 768.8 514 86.4
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 4.4e-220 768.1 513 86.2
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 9.7e-220 766.9 504 87.5
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 1.7e-219 766.1 512 86.3
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 1.7e-219 766.1 512 86.3
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 2.2e-219 765.8 511 86.7
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 2.8e-219 765.4 514 84.6
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 8.2e-219 763.8 514 84.2
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 1.4e-218 763.1 514 87.0
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.8e-218 762.7 514 85.4
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 2.4e-218 762.3 514 83.7
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 3.1e-218 761.9 514 85.2
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 5.3e-218 761.1 511 84.1
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 5.3e-218 761.1 514 85.0
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 9.1e-218 760.4 513 85.4
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 9.1e-218 760.4 511 82.0
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 1.5e-217 759.6 514 83.3
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 2.6e-217 758.8 514 83.3
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 4.5e-217 758.1 515 83.7
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 5.9e-217 757.7 512 87.1
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.3e-216 756.5 514 83.7
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 2.2e-216 755.7 514 79.6
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 2.9e-216 755.4 514 84.2
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 2.9e-216 755.4 514 85.4
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 1.1e-215 753.4 511 85.1
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 1.9e-215 752.7 535 78.9
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 9.4e-215 750.4 509 85.1
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 9.4e-215 750.4 509 85.1
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 1.2e-214 750.0 536 81.7
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 2.1e-214 749.2 511 84.7
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 2.7e-214 748.8 511 83.0
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.0e-213 746.9 504 85.3
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 3.9e-213 745.0 514 85.0
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 5.2e-213 744.6 513 81.9
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 2.6e-212 742.3 514 84.4
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 5.7e-212 741.1 514 83.7
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 7.4e-212 740.7 514 83.5
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 3.7e-211 738.4 504 84.1
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 4.8e-211 738.0 504 82.1
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 8.2e-211 737.3 551 75.9
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 4.5e-209 731.5 514 78.2
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 5.5e-207 724.5 500 81.2
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 7.2e-207 724.2 520 82.1
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 4.0e-205 718.4 514 79.6
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 8.8e-205 717.2 507 81.1
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.4e-202 709.9 509 82.3
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 3.5e-201 705.3 535 77.4
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 5.9e-201 704.5 485 84.1
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 8.5e-200 700.7 557 73.6
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 3.2e-199 698.7 511 80.0
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 1.6e-198 696.4 514 75.3
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 4.0e-197 691.8 514 76.8
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 3.4e-196 688.7 484 83.9
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 3.5e-193 678.7 525 77.0
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 5.9e-193 677.9 468 85.9
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 6.6e-192 674.5 514 75.1
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 2.3e-189 666.0 464 85.6
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 6.8e-189 664.5 511 68.1
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 5.2e-181 638.3 513 76.4
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 2.9e-179 632.5 430 87.2
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 6.6e-176 621.3 435 81.4
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 2.0e-172 609.8 428 82.5
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 4.0e-165 585.5 511 70.6
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 4.2e-154 548.9 404 80.7
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 2.5e-151 539.7 511 61.8
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 1.2e-137 494.2 269 90.7
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 1.1e-135 487.6 322 90.1
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 3.7e-134 482.6 254 95.7
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 4.8e-126 455.7 322 80.4
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 2.0e-111 407.1 385 60.3
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 1.4e-106 391.0 210 95.7
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 3.2e-106 389.8 210 95.2
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 4.7e-89 332.8 365 66.0
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 1.3e-78 298.1 206 83.5
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 3.5e-76 290.0 257 70.4
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 2.8e-73 280.4 522 44.3
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 5.2e-64 249.6 134 95.5
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 1.3e-59 235.0 526 34.8
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 1.3e-51 208.4 253 44.3
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 1.0e-43 182.2 99 83.8
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 5.2e-40 169.9 109 78.0
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 1.3e-38 165.2 80 95.0
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.2e-36 158.7 295 35.3
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 7.3e-34 149.4 80 91.2
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 1.8e-32 144.8 239 45.2
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 6.9e-32 142.9 137 62.0
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 4.4e-31 140.2 107 70.1
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 2.4e-29 134.4 100 68.0
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 2.4e-29 134.4 100 68.0
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 3.5e-28 130.6 70 88.6
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 2.5e-26 124.4 69 85.5
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 2.1e-25 121.3 64 85.9
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 2.1e-25 121.3 64 85.9
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 7.9e-20 102.8 56 82.1
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 4.3e-18 97.1 50 88.0
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 2.1e-17 94.7 56 75.0
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 4.0e-16 90.5 44 86.4
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 3.4e-15 87.4 47 95.7
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 7.6e-15 86.3 44 81.8
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 1.1e-13 82.4 134 61.2
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.4e-13 82.0 126 40.5
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 4.2e-13 80.5 105 46.7
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 4.3e-10 70.5 36 86.1
PRCOL_00005022 Prasinoderma coloniale HOM05D001610 ORTHO05D002685 6.3e-09 66.6 308 32.8
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 2.6e-07 61.2 35 77.1
Actinidia23032 Actinidia chinensis HOM05D004842 ORTHO05D008384 8.5e-06 56.2 74 51.4
Oeu002300.1 Olea europaea HOM05D004842 ORTHO05D005929 8.5e-06 56.2 60 55.0


User provided reference genes

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