Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 6.3e-172 609.0 900 100.0
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 4.7e-135 486.5 904 92.6
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 4.6e-122 443.4 911 90.6
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 2.5e-120 437.6 286 82.2
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 9.0e-102 375.9 299 66.9
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 2.9e-100 370.9 295 64.7
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 6.7e-97 359.8 305 65.2
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 9.6e-96 355.9 289 67.8
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 1.4e-94 352.1 298 62.8
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 5.8e-93 346.7 290 63.8
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 7.6e-93 346.3 291 60.5
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 7.6e-93 346.3 291 63.2
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 1.0e-92 345.9 290 63.8
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 1.7e-92 345.1 305 60.7
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 4.2e-91 340.5 303 61.4
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 4.2e-91 340.5 294 62.6
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 9.3e-91 339.3 268 68.7
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 1.2e-90 339.0 285 64.2
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 1.6e-90 338.6 295 62.7
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 4.6e-90 337.0 306 60.1
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 4.6e-90 337.0 296 62.2
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 7.9e-90 336.3 309 60.8
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.0e-89 335.9 295 61.4
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.8e-89 335.1 272 64.7
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.3e-89 334.7 298 63.8
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 3.0e-89 334.3 296 62.8
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 6.7e-89 333.2 301 57.8
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 8.7e-89 332.8 256 68.0
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 1.5e-88 332.0 277 67.1
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 5.7e-88 330.1 278 62.2
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 7.4e-88 329.7 276 63.4
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 9.6e-88 329.3 226 74.3
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 1.3e-87 328.9 256 66.8
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 1.3e-87 328.9 256 66.8
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 1.3e-87 328.9 267 64.8
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 1.6e-87 328.6 265 63.8
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 3.7e-87 327.4 294 60.9
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 4.8e-87 327.0 321 56.1
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 1.8e-86 325.1 295 63.7
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.8e-86 325.1 264 62.5
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 1.8e-86 325.1 292 61.6
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 3.1e-86 324.3 308 56.2
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 3.1e-86 324.3 241 66.0
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 4.0e-86 323.9 293 62.5
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 1.2e-85 322.4 285 62.5
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 3.4e-85 320.9 236 69.5
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 4.5e-85 320.5 292 62.0
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 5.8e-85 320.1 189 77.8
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 7.6e-85 319.7 288 59.7
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 1.0e-84 319.3 301 60.1
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 8.4e-84 316.2 322 55.3
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 1.9e-83 315.1 304 59.2
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 3.2e-83 314.3 297 59.9
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 4.2e-83 313.9 307 58.3
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 5.5e-83 313.5 271 63.1
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 9.3e-83 312.8 314 56.7
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 1.2e-82 312.4 297 59.6
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 2.7e-82 311.2 295 61.4
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 4.6e-82 310.5 235 63.4
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 7.9e-82 309.7 307 54.1
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 1.3e-81 308.9 282 57.8
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 1.8e-81 308.5 264 62.9
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 3.9e-81 307.4 244 64.8
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 2.5e-80 304.7 301 56.5
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 5.7e-80 303.5 305 57.0
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 1.6e-79 302.0 294 55.4
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 2.2e-79 301.6 285 59.6
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 2.8e-79 301.2 303 55.4
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 2.4e-78 298.1 313 55.3
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 3.1e-78 297.7 293 54.6
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 4.1e-78 297.4 302 56.3
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 4.1e-78 297.4 289 57.4
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 5.3e-78 297.0 302 56.3
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 2.0e-77 295.0 302 57.6
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.7e-76 292.0 240 65.0
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 2.5e-75 288.1 302 56.6
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 4.6e-74 283.9 292 54.8
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 1.4e-73 282.3 275 57.1
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 6.7e-73 280.0 292 54.5
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 8.8e-73 279.6 291 54.6
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 4.3e-72 277.3 262 59.9
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 7.4e-72 276.6 269 56.1
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 7.4e-72 276.6 298 55.0
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 9.7e-72 276.2 272 55.9
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 9.7e-72 276.2 262 60.3
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 2.2e-71 275.0 270 55.9
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 1.4e-70 272.3 232 62.1
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 5.9e-69 266.9 271 55.4
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 1.7e-68 265.4 317 49.8
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 2.2e-68 265.0 196 65.8
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 7.9e-66 256.5 231 63.2
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 3.3e-64 251.1 319 51.7
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 2.2e-63 248.4 143 82.5
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 7.0e-62 243.4 237 57.0
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 5.9e-61 240.4 141 82.3
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 3.8e-60 237.7 186 64.0
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 7.2e-59 233.4 151 74.2
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 9.4e-59 233.0 296 47.6
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 6.7e-57 226.9 165 66.1
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 5.5e-51 207.2 126 79.4
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 8.0e-50 203.4 184 51.1
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 2.8e-47 194.9 185 53.5
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 7.7e-45 186.8 181 47.5
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 2.9e-44 184.9 127 70.9
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 3.2e-43 181.4 183 48.1
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 1.7e-36 159.1 182 47.3
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 6.6e-36 157.1 182 47.3
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 4.0e-33 147.9 184 40.8
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 2.0e-32 145.6 191 44.5
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 4.4e-32 144.4 96 70.8
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 4.9e-31 141.0 89 78.7
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 6.4e-31 140.6 190 41.6
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 1.6e-29 136.0 87 73.6
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.6e-29 136.0 117 64.1
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 2.9e-28 131.7 125 56.0
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 2.9e-28 131.7 99 70.7
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.9e-28 131.3 89 73.0
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 6.6e-28 130.6 77 77.9
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 6.6e-28 130.6 119 59.7
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 1.1e-27 129.8 114 59.6
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 1.9e-27 129.0 117 54.7
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 5.6e-27 127.5 97 67.0
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 1.2e-26 126.3 121 57.0
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.0e-25 121.3 105 61.0
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 5.2e-25 120.9 98 65.3
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 6.8e-25 120.6 91 61.5
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 2.2e-23 115.5 81 64.2
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 6.4e-23 114.0 73 67.1
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 1.1e-19 103.2 210 35.7
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 7.3e-19 100.5 72 72.2
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 3.2e-14 85.1 145 34.5
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 1.6e-13 82.8 42 90.5
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 6.6e-12 77.4 86 48.8
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 8.6e-12 77.0 74 58.1
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 4.3e-11 74.7 48 66.7
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 7.3e-11 73.9 45 80.0
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 8.9e-09 67.0 43 72.1
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 8.9e-09 67.0 43 72.1
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 1.1e-06 60.1 158 27.8
ATR0304G030 Amborella trichopoda HOM05D000142 ORTHO05D010028 1.4e-06 59.7 83 39.8
PSO063G1344 Papaver somniferum HOM05D000142 ORTHO05D001253 1.4e-06 59.7 89 40.4
PSO339G2666 Papaver somniferum HOM05D000142 ORTHO05D001253 1.4e-06 59.7 89 40.4
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 3.2e-06 58.5 117 30.8
vmacro05633 Vaccinium macrocarpon HOM05D000142 ORTHO05D000124 3.2e-06 58.5 83 38.6
Cc00_g14830 Coffea canephora HOM05D000142 ORTHO05D000124 5.4e-06 57.8 80 37.5
Carub.0004s1709 Capsella rubella HOM05D000142 ORTHO05D003173 7.1e-06 57.4 88 38.6
THA.LOC104825320 Tarenaya hassleriana HOM05D000285 ORTHO05D000241 7.1e-06 57.4 77 39.0


User provided reference genes

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