Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0002260 Simmondsia chinensis HOM05D005767 ORTHO05D006785 0.0e+00 1219.1 602 100.0
AUR62003364 Chenopodium quinoa HOM05D005767 ORTHO05D006785 2.5e-227 792.3 609 65.4
Ah.03g148810 Amaranthus hybridus HOM05D005767 ORTHO05D006785 8.1e-226 787.3 601 65.2
Hund16493 Selenicereus undatus HOM05D005767 ORTHO05D006785 6.0e-221 771.2 594 66.5
AUR62029469 Chenopodium quinoa HOM05D005767 ORTHO05D006785 5.8e-216 754.6 586 65.7
CSS0010624 Camellia sinensis var. sinensis HOM05D005767 ORTHO05D006785 1.1e-201 707.2 623 59.2
Dinv33631 Davidia involucrata HOM05D005767 ORTHO05D006785 1.0e-199 700.7 627 58.2
TAR376G0924 Trochodendron aralioides HOM05D005767 ORTHO05D006785 3.2e-198 695.7 639 56.3
RcHm_v2.0_Chr2g0099381 Rosa chinensis HOM05D005767 ORTHO05D006785 2.3e-196 689.5 614 59.0
FvH4_1g11761 Fragaria vesca HOM05D005767 ORTHO05D006785 8.8e-196 687.6 610 57.7
Manes.01G146000 Manihot esculenta HOM05D005767 ORTHO05D006785 5.7e-195 684.9 627 55.7
Potri.007G057400 Populus trichocarpa HOM05D005767 ORTHO05D006785 6.3e-194 681.4 630 55.4
COL.COLO4_21902 Corchorus olitorius HOM05D005767 ORTHO05D006785 9.1e-193 677.6 617 57.2
FAN19G2575 Fragaria x ananassa HOM05D005767 ORTHO05D006785 9.1e-193 677.6 610 56.9
QL06p032910 Quercus lobata HOM05D005767 ORTHO05D006785 1.2e-192 677.2 626 56.7
Prupe.7G168600 Prunus persica HOM05D005767 ORTHO05D006785 5.9e-192 674.9 616 58.3
CiPaw.07G058900 Carya illinoinensis HOM05D005767 ORTHO05D006785 3.8e-191 672.2 595 58.3
Lsat_1_v5_gn_4_144841 Lactuca sativa HOM05D005767 ORTHO05D006785 1.9e-190 669.8 597 57.3
Thecc.01G018100 Theobroma cacao HOM05D005767 ORTHO05D006785 7.2e-190 667.9 622 55.1
Cc07_g10770 Coffea canephora HOM05D005767 ORTHO05D006785 2.3e-188 662.9 606 55.6
Nn1g05917 Nelumbo nucifera HOM05D005767 ORTHO05D006785 2.3e-188 662.9 629 54.7
Ciclev10025146m.g Citrus clementina HOM05D005767 ORTHO05D006785 3.0e-188 662.5 643 55.2
Gorai.007G194300 Gossypium raimondii HOM05D005767 ORTHO05D006785 3.9e-188 662.1 645 53.2
VMungo0251G0680 Vigna mungo HOM05D005767 ORTHO05D006785 6.7e-188 661.4 622 55.9
Gohir.A11G175000 Gossypium hirsutum HOM05D005767 ORTHO05D006785 8.8e-188 661.0 650 53.5
MD02G1131900 Malus domestica HOM05D005767 ORTHO05D006785 4.4e-187 658.7 623 56.3
HanXRQChr09g0256711 Helianthus annuus HOM05D005767 ORTHO05D006785 1.7e-186 656.8 604 56.5
Sabra07G0049300 Salix brachista HOM05D005767 ORTHO05D006785 1.7e-186 656.8 655 53.1
AT4G36050 Arabidopsis thaliana HOM05D005767 ORTHO05D006785 7.0e-185 651.4 618 55.2
Thhalv10024709m.g Eutrema salsugineum HOM05D005767 ORTHO05D006785 4.5e-184 648.7 617 55.9
Haze_03760 Corylus avellana HOM05D005767 ORTHO05D006785 5.9e-184 648.3 710 50.6
Carub.0007s0418 Capsella rubella HOM05D005767 ORTHO05D006785 7.7e-184 647.9 637 53.7
Atru.chr3.804 Acer truncatum HOM05D005767 ORTHO05D006785 1.0e-183 647.5 631 55.3
MSTRG.23406 Avicennia marina HOM05D005767 ORTHO05D006785 1.0e-183 647.5 606 56.6
Nitab4.5_0006119g0040 Nicotiana tabacum HOM05D005767 ORTHO05D006785 2.2e-183 646.4 600 56.3
Lj4g0015609 Lotus japonicus HOM05D005767 ORTHO05D006785 3.8e-183 645.6 619 55.4
DCAR_026000 Daucus carota HOM05D005767 ORTHO05D006785 5.0e-183 645.2 620 55.3
Cpa.g.sc6.256 Carica papaya HOM05D005767 ORTHO05D006785 1.1e-182 644.0 623 55.2
Sp7g33830 Schrenkiella parvula HOM05D005767 ORTHO05D006785 1.1e-182 644.0 612 55.6
TPR.G27975 Trifolium pratense HOM05D005767 ORTHO05D006785 1.1e-182 644.0 620 54.0
ECA232G4495 Erigeron canadensis HOM05D005767 ORTHO05D006785 1.5e-182 643.7 599 55.8
CAN.G1735.5 Capsicum annuum HOM05D005767 ORTHO05D006785 3.2e-182 642.5 611 55.8
SGA_v2.0_scaffold76G25121 Striga asiatica HOM05D005767 ORTHO05D006785 4.2e-182 642.1 629 55.2
PSO541G2118 Papaver somniferum HOM05D005767 ORTHO05D006785 7.2e-182 641.3 616 54.9
Psat4g100320 Pisum sativum HOM05D005767 ORTHO05D006785 7.2e-182 641.3 623 54.4
MELO3C007906.2 Cucumis melo HOM05D005767 ORTHO05D006785 2.7e-181 639.4 623 55.7
AL7G15000 Arabidopsis lyrata HOM05D005767 ORTHO05D006785 1.0e-180 637.5 618 54.9
CsaV3_6G047130 Cucumis sativus L. HOM05D005767 ORTHO05D006785 1.8e-180 636.7 622 55.5
Sed0019779 Sechium edule HOM05D005767 ORTHO05D006785 1.5e-179 633.6 616 55.5
Nitab4.5_0000438g0060 Nicotiana tabacum HOM05D005767 ORTHO05D006785 3.3e-179 632.5 622 54.7
Medtr8g075810 Medicago truncatula HOM05D005767 ORTHO05D006785 5.7e-179 631.7 621 54.3
Sopen03g006310 Solanum pennellii HOM05D005767 ORTHO05D006785 7.5e-179 631.3 599 55.1
Ca_22378_v3 Cicer arietinum L. HOM05D005767 ORTHO05D006785 9.7e-179 630.9 617 53.6
Aa31LG6G13010 Aethionema arabicum HOM05D005767 ORTHO05D006785 1.7e-178 630.2 606 55.8
Migut.N01741 Erythranthe guttata HOM05D005767 ORTHO05D006785 8.2e-178 627.9 615 54.5
Rhsim10G0211700 Rhododendron simsii HOM05D005767 ORTHO05D006785 1.1e-177 627.5 610 56.4
C01p02980 Brassica napus HOM05D005767 ORTHO05D006785 2.7e-176 622.9 602 55.8
PGR119G2148 Punica granatum HOM05D005767 ORTHO05D006785 3.5e-176 622.5 599 55.4
arahy.Tifrunner.gnm1.ann1.G0D851 Arachis hypogaea HOM05D005767 ORTHO05D006785 7.7e-176 621.3 610 53.4
Duzib147G1641 Durio zibethinus HOM05D005767 ORTHO05D006785 5.0e-175 618.6 623 53.1
TWI73G0295 Tripterygium wilfordii HOM05D005767 ORTHO05D006785 5.0e-175 618.6 623 52.6
arahy.Tifrunner.gnm1.ann1.12F6XV Arachis hypogaea HOM05D005767 ORTHO05D006785 1.6e-173 613.6 613 53.2
Peaxi162Scf00050g00215 Petunia axillaris HOM05D005767 ORTHO05D006785 3.6e-173 612.5 599 54.3
Aqoxy6G02211 Aquilegia oxysepala HOM05D005767 ORTHO05D006785 2.6e-171 606.3 611 54.2
HPP92_005447 Vanilla planifolia HOM05D005767 ORTHO05D006785 4.8e-170 602.1 636 50.9
ClCG01G020330 Citrullus lanatus HOM05D005767 ORTHO05D006785 9.1e-169 597.8 678 50.3
vmacro22135 Vaccinium macrocarpon HOM05D005767 ORTHO05D006785 1.2e-168 597.4 617 52.7
Glyma.02G048200 Glycine max HOM05D005767 ORTHO05D006785 1.6e-168 597.0 647 51.2
BcaNung00769 Brassica carinata HOM05D005767 ORTHO05D006785 1.7e-167 593.6 601 53.9
BraA01t00254Z Brassica rapa HOM05D005767 ORTHO05D006785 1.7e-167 593.6 582 54.6
Solyc03g033530.4 Solanum lycopersicum HOM05D005767 ORTHO05D006785 2.2e-167 593.2 583 54.5
Phvul.003G261600 Phaseolus vulgaris HOM05D005767 ORTHO05D006785 4.2e-166 589.0 625 52.3
CDE04G0100 Ceratophyllum demersum HOM05D005767 ORTHO05D006785 4.7e-165 585.5 601 51.1
FAN26G3405 Fragaria x ananassa HOM05D005767 ORTHO05D006785 8.0e-165 584.7 597 53.8
BolC1t00284H Brassica oleracea HOM05D005767 ORTHO05D006785 2.3e-164 583.2 632 50.3
A01p02680 Brassica napus HOM05D005767 ORTHO05D006785 5.2e-164 582.0 581 53.5
Lj2C469G1 Lonicera japonica HOM05D005767 ORTHO05D006785 2.2e-162 576.6 532 55.8
GSVIVG01018776001 Vitis vinifera HOM05D005767 ORTHO05D006785 6.3e-162 575.1 387 70.0
Os09g0536000 Oryza sativa ssp. japonica HOM05D005767 ORTHO05D006785 3.4e-155 552.7 632 48.7
ATR0810G226 Amborella trichopoda HOM05D005767 ORTHO05D006785 1.6e-152 543.9 571 51.5
SHI08521 Sapria himalayana HOM05D000565 ORTHO05D002009 1.7e-151 540.4 566 50.2
Gohir.D11G182500 Gossypium hirsutum HOM05D005767 ORTHO05D006785 1.0e-148 531.2 563 49.4
MBI09_g09407_MAGBIO Magnolia biondii HOM05D005767 ORTHO05D006785 2.0e-147 526.9 565 52.7
FAN26G2808 Fragaria x ananassa HOM05D005767 ORTHO05D006785 3.9e-143 512.7 467 57.6
unitig_32.g10945 Utricularia gibba HOM05D005767 ORTHO05D006785 2.1e-141 506.9 612 46.7
Mapoly0107s0007 Marchantia polymorpha HOM05D005767 ORTHO05D006785 6.4e-138 495.4 641 44.3
Pp3c17_13320 Physcomitrium patens HOM05D005767 ORTHO05D006785 1.6e-133 480.7 646 42.4
Actinidia22973 Actinidia chinensis HOM05D005767 ORTHO05D006785 1.2e-131 474.6 620 45.5
SMO356G0595 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 4.2e-121 439.5 591 43.7
Oeu035312.2 Olea europaea HOM05D005767 ORTHO05D006785 1.8e-116 424.1 449 49.7
Hma1.2p1_1115F.1_g258820 Hydrangea macrophylla HOM05D005767 ORTHO05D006785 8.7e-111 405.2 308 61.4
Lalb_Chr05g0229861 Lupinus albus HOM05D005767 ORTHO05D006785 3.8e-98 363.2 250 69.2
Eucgr.I02343 Eucalyptus grandis HOM05D005767 ORTHO05D006785 1.6e-96 357.8 393 48.1
Lalb_Chr05g0229851 Lupinus albus HOM05D005767 ORTHO05D006785 1.1e-78 298.5 378 44.7
FAN28G0764 Fragaria x ananassa HOM05D005767 ORTHO05D006785 2.2e-74 284.3 217 67.3
AagrBONN_evm.TU.Sc2ySwM_344.3375 Anthoceros agrestis HOM05D005767 ORTHO05D006785 1.7e-66 258.1 462 36.8
Psat7g239080 Pisum sativum HOM05D005767 ORTHO05D006785 1.3e-58 231.9 163 70.6
SMO290G0007 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 4.7e-56 223.4 225 50.7
CBR_g18710 Chara braunii HOM05D005767 ORTHO05D006785 6.8e-55 219.5 250 45.2
MCO08G331 Micromonas commoda HOM05D005767 ORTHO05D006785 8.3e-45 186.0 622 27.3
MBI09_g45348_MAGBIO Magnolia biondii HOM05D005767 ORTHO05D006785 1.1e-44 185.7 132 68.2
Potri.005G113301 Populus trichocarpa HOM05D005767 ORTHO05D006785 4.3e-41 173.7 269 37.9
Glyma.16G128500 Glycine max HOM05D005767 ORTHO05D006785 4.7e-40 170.2 222 45.5
Cre12.g532750 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 1.5e-38 165.2 286 38.8
SEGI_12703 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 3.4e-38 164.1 140 53.6
Lsat_1_v5_gn_9_7060 Lactuca sativa HOM05D005767 ORTHO05D006785 1.4e-36 158.7 215 42.3
Sc16g0002220 Simmondsia chinensis HOM05D005767 ORTHO05D006785 3.2e-36 157.5 95 86.3
SMO356G0427 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 1.7e-34 151.8 413 30.3
SMO290G0017 Selaginella moellendorffii HOM05D001672 ORTHO05D006785 3.0e-34 151.0 244 43.4
CARHR244450 Cardamine hirsuta HOM05D005767 ORTHO05D006785 1.2e-32 145.6 277 35.7
Cfa024213 Carpinus fangiana HOM05D005767 ORTHO05D006785 1.1e-28 132.5 306 32.4
SEGI_01145 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 1.9e-28 131.7 115 60.0
GSVIVG01018775001 Vitis vinifera HOM05D005767 ORTHO05D006785 7.0e-28 129.8 96 63.5
MD15G1245100 Malus domestica HOM05D005767 ORTHO05D006785 3.9e-26 124.0 149 52.3
AagrBONN_evm.TU.Sc2ySwM_117.1514 Anthoceros agrestis HOM05D005767 ORTHO05D006785 2.0e-22 111.7 276 30.1
Psat7g239040 Pisum sativum HOM05D005767 ORTHO05D006785 9.9e-22 109.4 81 59.3
MD15G1244800 Malus domestica HOM05D005767 ORTHO05D006785 3.7e-21 107.5 244 34.8
Cre12.g534151 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 4.1e-20 104.0 305 28.9
arahy.Tifrunner.gnm1.ann1.S1GY7D Arachis hypogaea HOM05D005767 ORTHO05D006785 7.8e-19 99.8 168 34.5
SMO356G0296 Selaginella moellendorffii HOM05D005767 ORTHO05D006785 5.1e-18 97.1 330 28.5
CBR_g48654 Chara braunii HOM05D005767 ORTHO05D006785 6.6e-18 96.7 206 30.1
Cre07.g350550 Chlamydomonas reinhardtii HOM05D005767 ORTHO05D006785 1.9e-17 95.1 230 30.4
MD15G1244900 Malus domestica HOM05D005767 ORTHO05D006785 3.3e-17 94.4 88 47.7
Pp3c3_16930 Physcomitrium patens HOM05D005767 ORTHO05D006785 9.5e-17 92.8 212 30.2
BraA04t18621Z Brassica rapa HOM05D005620 ORTHO05D002193 1.4e-15 89.0 299 28.1
BolC4t28403H Brassica oleracea HOM05D005620 ORTHO05D002193 5.2e-15 87.0 299 27.8
CDE04G0757 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 5.2e-15 87.0 300 27.7
C04p69060 Brassica napus HOM05D005620 ORTHO05D002193 8.9e-15 86.3 299 27.4
A04p31630 Brassica napus HOM05D005620 ORTHO05D002193 1.2e-14 85.9 299 27.4
HPP92_016888 Vanilla planifolia HOM05D005620 ORTHO05D002193 1.5e-14 85.5 297 28.3
THA.LOC104803289 Tarenaya hassleriana HOM05D002000 ORTHO05D002027 2.0e-14 85.1 299 28.4
BcaB01g03467 Brassica carinata HOM05D005620 ORTHO05D002193 3.4e-14 84.3 283 27.6
Mapoly0057s0088 Marchantia polymorpha HOM05D005620 ORTHO05D002193 5.8e-14 83.6 295 26.8
AL4G39540 Arabidopsis lyrata HOM05D005620 ORTHO05D002193 7.6e-14 83.2 292 28.1
AT2G41460 Arabidopsis thaliana HOM05D005620 ORTHO05D002193 7.6e-14 83.2 292 28.4
Carub.0004s2376 Capsella rubella HOM05D005620 ORTHO05D002193 9.9e-14 82.8 291 26.8
Eucgr.I02344 Eucalyptus grandis HOM05D005767 ORTHO05D006785 1.3e-13 82.4 217 33.6
Thhalv10016487m.g Eutrema salsugineum HOM05D005620 ORTHO05D002193 2.2e-13 81.6 291 26.8
A03p23280 Brassica napus HOM05D005620 ORTHO05D002193 2.9e-13 81.3 292 27.1
BraA03t11547Z Brassica rapa HOM05D005620 ORTHO05D002193 2.9e-13 81.3 292 27.1
C03p27780 Brassica napus HOM05D005620 ORTHO05D002193 4.9e-13 80.5 283 26.9
Sp4g23730 Schrenkiella parvula HOM05D005620 ORTHO05D002193 8.4e-13 79.7 299 26.8
AagrBONN_evm.TU.Sc2ySwM_369.93 Anthoceros agrestis HOM05D005620 ORTHO05D002193 4.1e-12 77.4 284 24.6
CAN.G594.8 Capsicum annuum HOM05D005767 ORTHO05D006785 4.1e-12 77.4 67 55.2
CARHR136580 Cardamine hirsuta HOM05D005620 ORTHO05D002193 4.1e-12 77.4 299 26.1
BcaC01g05336 Brassica carinata HOM05D005620 ORTHO05D002193 1.2e-11 75.9 283 26.1
BolC3t15148H Brassica oleracea HOM05D005620 ORTHO05D002193 1.2e-11 75.9 283 26.1
DCAR_019347 Daucus carota HOM05D005620 ORTHO05D002193 3.0e-10 71.2 288 24.7
Aa31LG1G23480 Aethionema arabicum HOM05D005620 ORTHO05D002193 6.6e-10 70.1 328 24.7
arahy.Tifrunner.gnm1.ann1.R2J7CI Arachis hypogaea HOM05D005767 ORTHO05D006785 6.6e-10 70.1 40 70.0
CDE07G1402 Ceratophyllum demersum HOM05D005620 ORTHO05D002193 1.9e-09 68.6 276 25.7
arahy.Tifrunner.gnm1.ann1.JHI6E6 Arachis hypogaea HOM05D005767 ORTHO05D006785 4.3e-09 67.4 40 70.0
Eucgr.I02345 Eucalyptus grandis HOM05D005767 ORTHO05D006785 4.7e-08 63.9 39 74.4
MCO06G208 Micromonas commoda HOM05D005767 ORTHO05D006785 4.0e-07 60.8 95 38.9
SEGI_27797 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 5.2e-07 60.5 199 30.2
MBI09_g09411_MAGBIO Magnolia biondii HOM05D002731 ORTHO05D003073 6.9e-07 60.1 48 62.5
SEGI_05705 Sequoiadendron giganteum HOM05D005767 ORTHO05D006785 7.6e-06 56.6 89 33.7
Potri.005G113250 Populus trichocarpa HOM05D005767 ORTHO05D006785 9.9e-06 56.2 32 65.6


User provided reference genes

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