Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc11g0005800 Simmondsia chinensis HOM05D000216 ORTHO05D000634 6.6e-85 317.4 167 100.0
RcHm_v2.0_CPg0502411 Rosa chinensis HOM05D000216 ORTHO05D000634 7.1e-71 270.8 156 90.4
Medtr4g051120 Medicago truncatula HOM05D000216 ORTHO05D000634 3.5e-70 268.5 156 89.7
Sc07g0006590 Simmondsia chinensis HOM05D000216 ORTHO05D000634 7.8e-70 267.3 156 91.0
PSO548G0073 Papaver somniferum HOM05D000216 ORTHO05D000634 1.0e-69 266.9 156 89.1
Lj2C1239G21 Lonicera japonica HOM05D000216 ORTHO05D000634 1.3e-69 266.5 156 88.5
ATR0187G001 Amborella trichopoda HOM05D000216 ORTHO05D000634 2.3e-69 265.8 156 88.5
Gohir.A05G086066 Gossypium hirsutum HOM05D000216 ORTHO05D000634 3.0e-69 265.4 156 87.8
ATCG00170 Arabidopsis thaliana HOM05D000216 ORTHO05D000634 3.9e-69 265.0 156 87.8
BNapus_Darmor_BZH_scaffold_253p00060 Brassica napus HOM05D000216 ORTHO05D000634 5.1e-69 264.6 156 87.8
BraSC58t46405Z Brassica rapa HOM05D000216 ORTHO05D000634 5.1e-69 264.6 156 87.8
DCAR_032474 Daucus carota HOM05D000216 ORTHO05D000634 8.7e-69 263.8 156 87.2
Atru.chr2.3403 Acer truncatum HOM05D000216 ORTHO05D000634 1.5e-68 263.1 156 87.8
EL10As12g24016 Beta vulgaris HOM05D000216 ORTHO05D001131 1.9e-68 262.7 156 88.5
Ah.10g027600 Amaranthus hybridus HOM05D000216 ORTHO05D000634 2.5e-68 262.3 156 88.5
Ah.10g027800 Amaranthus hybridus HOM05D000216 ORTHO05D000634 2.5e-68 262.3 156 88.5
Peaxi162Scf00379g00084 Petunia axillaris HOM05D000216 ORTHO05D000634 2.5e-68 262.3 156 86.5
CAN.G1180.14 Capsicum annuum HOM05D000216 ORTHO05D000634 5.6e-68 261.2 156 85.9
CAN.G1648.10 Capsicum annuum HOM05D000216 ORTHO05D000634 5.6e-68 261.2 156 85.9
Ah.10g028500 Amaranthus hybridus HOM05D000216 ORTHO05D000634 7.3e-68 260.8 156 87.8
Medtr7g116700 Medicago truncatula HOM05D000216 ORTHO05D000634 1.3e-67 260.0 156 86.5
unitig_91.g26496 Utricularia gibba HOM05D000216 ORTHO05D000634 1.3e-67 260.0 156 85.3
PGR111G0086 Punica granatum HOM05D000216 ORTHO05D000634 1.6e-67 259.6 156 85.9
Solyc00g500052.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.6e-67 259.6 156 85.3
Solyc00g500135.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.6e-67 259.6 156 85.3
Solyc00g500205.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.6e-67 259.6 156 85.3
Solyc00g500290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.6e-67 259.6 156 85.3
Solyc00g500319.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 1.6e-67 259.6 156 85.3
AUR62030170 Chenopodium quinoa HOM05D000216 ORTHO05D000634 3.6e-67 258.5 157 86.6
Eucgr.K02695 Eucalyptus grandis HOM05D000216 ORTHO05D000634 3.6e-67 258.5 156 86.5
CAN.G612.1 Capsicum annuum HOM05D000216 ORTHO05D000634 4.8e-67 258.1 156 85.3
RhsimPtG0004600 Rhododendron simsii HOM05D000743 ORTHO05D000580 8.1e-67 257.3 156 85.3
PGSC0003DMG400017664 Solanum tuberosum HOM05D000216 ORTHO05D000634 8.1e-67 257.3 156 84.6
vmacro22403 Vaccinium macrocarpon HOM05D000216 ORTHO05D000634 1.1e-66 256.9 156 84.6
Psat5g134640 Pisum sativum HOM05D000216 ORTHO05D000634 1.8e-66 256.1 151 86.1
QL93p0837_0001 Quercus lobata HOM05D000216 ORTHO05D000634 1.8e-66 256.1 156 85.9
Hma1.2p1_0414F.1_g147670 Hydrangea macrophylla HOM05D000216 ORTHO05D000634 2.4e-66 255.8 156 85.3
CDE07G0287 Ceratophyllum demersum HOM05D003429 ORTHO05D003873 5.3e-66 254.6 156 85.9
SabraPtG0001000 Salix brachista HOM05D000216 ORTHO05D000634 5.3e-66 254.6 156 84.0
AUR62021208 Chenopodium quinoa HOM05D000216 ORTHO05D000634 1.2e-65 253.4 156 86.5
Sed0025233 Sechium edule HOM05D000216 ORTHO05D001131 1.5e-65 253.1 156 84.6
SalBow1G4778 Salvia bowleyana HOM05D000216 ORTHO05D001131 2.0e-65 252.7 156 84.0
Potri.013G140260 Populus trichocarpa HOM05D000216 ORTHO05D000634 2.6e-65 252.3 156 83.3
HanXRQChr00c0313g0573461 Helianthus annuus HOM05D000216 ORTHO05D000634 3.4e-65 251.9 156 83.3
HanXRQChr00c0601g0576531 Helianthus annuus HOM05D000216 ORTHO05D000634 3.4e-65 251.9 156 83.3
HanXRQChr08g0210181 Helianthus annuus HOM05D000216 ORTHO05D000634 3.4e-65 251.9 156 83.3
HanXRQChr11g0326611 Helianthus annuus HOM05D000216 ORTHO05D000634 3.4e-65 251.9 156 83.3
HanXRQCPg0579801 Helianthus annuus HOM05D000216 ORTHO05D001131 3.4e-65 251.9 156 83.3
Lalb_Chr09g0335361 Lupinus albus HOM05D000216 ORTHO05D000634 9.9e-65 250.4 156 84.6
Lsat_1_v5_gn_1_6760 Lactuca sativa HOM05D003214 ORTHO05D004330 1.7e-64 249.6 156 83.3
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 1.7e-64 249.6 156 83.3
Lsat_1_v5_gn_5_26601 Lactuca sativa HOM05D000216 ORTHO05D000634 1.7e-64 249.6 156 83.3
LjContig00318g0011041 Lotus japonicus HOM05D000216 ORTHO05D000634 1.7e-64 249.6 156 84.0
Hund03956 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.8e-64 248.4 155 84.5
Hund25862 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.8e-64 248.4 155 84.5
Hund27560 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.8e-64 248.4 155 84.5
Hund27610 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.8e-64 248.4 155 84.5
Hund27866 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.8e-64 248.4 155 84.5
Hund27917 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.8e-64 248.4 155 84.5
Hund27996 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.8e-64 248.4 155 84.5
Hund28277 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.8e-64 248.4 155 84.5
Hund28387 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.8e-64 248.4 155 84.5
Hund28559 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.8e-64 248.4 155 84.5
Hund28793 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.8e-64 248.4 155 84.5
Hund29740 Selenicereus undatus HOM05D000216 ORTHO05D000634 3.8e-64 248.4 155 84.5
SGA_v2.0_scaffold119G32689 Striga asiatica HOM05D000216 ORTHO05D000634 3.8e-64 248.4 155 83.9
Zm00001eb314280 Zea mays HOM05D000216 ORTHO05D000634 6.4e-64 247.7 155 83.2
Zm00001eb435270 Zea mays HOM05D000216 ORTHO05D000634 6.4e-64 247.7 155 83.2
Zm00001eb435480 Zea mays HOM05D000216 ORTHO05D000634 6.4e-64 247.7 155 83.2
Zm00001eb436830 Zea mays HOM05D000216 ORTHO05D000634 6.4e-64 247.7 155 83.2
Zm00001eb437260 Zea mays HOM05D000216 ORTHO05D000634 6.4e-64 247.7 155 83.2
Medtr0002s0510 Medicago truncatula HOM05D000216 ORTHO05D001131 1.4e-63 246.5 155 83.9
CiPaw.12G031000 Carya illinoinensis HOM05D000216 ORTHO05D000634 7.1e-63 244.2 156 84.0
arahy.Tifrunner.gnm1.ann1.N383GM Arachis hypogaea HOM05D000216 ORTHO05D000634 2.3e-61 239.2 156 80.1
CsaV3_UNG207810 Cucumis sativus L. HOM05D000216 ORTHO05D000634 8.7e-61 237.3 158 82.3
Gorai.013G017900 Gossypium raimondii HOM05D000216 ORTHO05D000634 3.3e-60 235.3 156 79.5
Psat4g062520 Pisum sativum HOM05D000216 ORTHO05D003518 6.9e-58 227.6 151 78.8
LjContig00489g0015528 Lotus japonicus HOM05D000216 ORTHO05D000634 1.5e-57 226.5 156 78.8
Medtr7g069560 Medicago truncatula HOM05D000216 ORTHO05D000634 4.6e-54 214.9 151 77.5
Nitab4.5_0001761g0220 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.0e-53 213.8 134 81.3
Gohir.D12G094332 Gossypium hirsutum HOM05D000216 ORTHO05D000634 1.2e-49 200.3 141 78.7
AUR62030122 Chenopodium quinoa HOM05D000216 ORTHO05D000634 7.6e-49 197.6 130 79.2
Hund29352 Selenicereus undatus HOM05D000216 ORTHO05D000634 4.9e-48 194.9 119 84.9
Sed0000813 Sechium edule HOM05D000216 ORTHO05D000634 1.1e-47 193.7 148 74.3
Psat2g044360 Pisum sativum HOM05D000216 ORTHO05D000634 2.5e-47 192.6 120 81.7
Gorai.008G102500 Gossypium raimondii HOM05D000216 ORTHO05D000634 7.1e-47 191.0 127 81.9
MELO3C001268.2 Cucumis melo HOM05D000216 ORTHO05D000634 1.2e-46 190.3 114 89.5
MELO3C028015.2 Cucumis melo HOM05D000216 ORTHO05D000634 1.2e-46 190.3 114 89.5
Lj2C1239T72 Lonicera japonica HOM05D000216 ORTHO05D000634 1.6e-46 189.9 156 66.7
Sed0017787 Sechium edule HOM05D000216 ORTHO05D000634 8.7e-45 184.1 123 82.9
AUR62042525 Chenopodium quinoa HOM05D000216 ORTHO05D000580 1.5e-44 183.3 156 66.7
Nitab4.5_0016036g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 3.3e-44 182.2 138 73.9
MELO3C028016.2 Cucumis melo HOM05D000216 ORTHO05D000634 7.4e-44 181.0 114 86.0
HanXRQChr14g0454991 Helianthus annuus HOM05D000216 ORTHO05D000634 1.4e-42 176.8 154 63.6
Pp3c7_4990 Physcomitrium patens HOM05D000216 ORTHO05D000634 2.6e-41 172.6 143 62.2
Migut.F01072 Erythranthe guttata HOM05D000216 ORTHO05D000634 2.2e-40 169.5 113 74.3
CAN.G100.42 Capsicum annuum HOM05D000216 ORTHO05D000634 7.9e-38 161.0 105 81.9
SGA_v2.0_scaffold477G52216 Striga asiatica HOM05D000216 ORTHO05D000634 1.7e-35 153.3 97 81.4
HanXRQChr00c0300g0573181 Helianthus annuus HOM05D000216 ORTHO05D000634 9.1e-34 147.5 134 64.2
Manes.01G046800 Manihot esculenta HOM05D000216 ORTHO05D000634 4.5e-33 145.2 90 81.1
Oeu012802.1 Olea europaea HOM05D000216 ORTHO05D000634 5.0e-32 141.7 96 78.1
QL08p049862 Quercus lobata HOM05D000216 ORTHO05D000634 1.9e-31 139.8 81 91.4
Gohir.A09G103316 Gossypium hirsutum HOM05D000216 ORTHO05D000634 4.2e-31 138.7 80 91.2
BraSC140t45598Z Brassica rapa HOM05D000216 ORTHO05D000634 7.2e-31 137.9 81 84.0
Nn3g18459 Nelumbo nucifera HOM05D000216 ORTHO05D000634 7.2e-31 137.9 80 88.8
CAN.G213.14 Capsicum annuum HOM05D000216 ORTHO05D000634 3.6e-30 135.6 81 79.0
Lalb_Chr07g0192701 Lupinus albus HOM05D000216 ORTHO05D000634 6.1e-30 134.8 105 77.1
Migut.D01340 Erythranthe guttata HOM05D000216 ORTHO05D000634 7.9e-30 134.4 156 51.9
Hma1.2p1_3151F.1_g333240 Hydrangea macrophylla HOM05D000175 ORTHO05D000481 2.3e-29 132.9 80 88.8
Nn092s42879 Nelumbo nucifera HOM05D000216 ORTHO05D000634 3.0e-29 132.5 80 87.5
HanXRQChr00c0125g0571741 Helianthus annuus HOM05D000216 ORTHO05D000634 6.7e-29 131.3 80 86.2
HanXRQChr07g0188311 Helianthus annuus HOM05D000216 ORTHO05D000634 6.7e-29 131.3 80 86.2
HanXRQChr10g0282521 Helianthus annuus HOM05D000216 ORTHO05D000634 6.7e-29 131.3 80 86.2
HanXRQChr15g0470971 Helianthus annuus HOM05D000216 ORTHO05D000634 1.5e-28 130.2 87 81.6
Medtr5g098620 Medicago truncatula HOM05D000216 ORTHO05D000634 2.0e-28 129.8 84 79.8
MD09G1229200 Malus domestica HOM05D000216 ORTHO05D003518 9.7e-28 127.5 81 82.7
CAN.G219.16 Capsicum annuum HOM05D000743 ORTHO05D000580 4.8e-27 125.2 80 83.8
MELO3C032363.2 Cucumis melo HOM05D000216 ORTHO05D000634 8.2e-27 124.4 80 81.2
CAN.G939.12 Capsicum annuum HOM05D000216 ORTHO05D000634 1.1e-26 124.0 76 88.2
Migut.D01414 Erythranthe guttata HOM05D000216 ORTHO05D000634 1.1e-26 124.0 79 83.5
Gohir.D01G206650 Gossypium hirsutum HOM05D000216 ORTHO05D000634 4.5e-25 118.6 76 81.6
EL10Ac3g05558 Beta vulgaris HOM05D000216 ORTHO05D000634 1.7e-24 116.7 89 71.9
HanXRQChr09g0238301 Helianthus annuus HOM05D000216 ORTHO05D000634 1.7e-24 116.7 70 85.7
Solyc08g028900.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 3.8e-24 115.5 80 80.0
PGSC0003DMG400020297 Solanum tuberosum HOM05D000216 ORTHO05D000634 1.4e-23 113.6 72 84.7
Hund12594 Selenicereus undatus HOM05D000216 ORTHO05D000634 7.2e-23 111.3 101 59.4
CSS0009554 Camellia sinensis var. sinensis HOM05D000216 ORTHO05D000634 2.7e-22 109.4 61 93.4
HPP92_007917 Vanilla planifolia HOM05D000216 ORTHO05D000634 1.0e-21 107.5 63 87.3
Hund15943 Selenicereus undatus HOM05D000216 ORTHO05D000634 5.2e-21 105.1 78 71.8
HanXRQChr12g0386351 Helianthus annuus HOM05D000216 ORTHO05D000634 1.5e-20 103.6 63 85.7
Lj2C1237G0 Lonicera japonica HOM05D000216 ORTHO05D003638 4.4e-20 102.1 58 93.1
SMO086G0013 Selaginella moellendorffii HOM05D000216 ORTHO05D000634 5.7e-20 101.7 143 42.0
HanXRQChr12g0386361 Helianthus annuus HOM05D000216 ORTHO05D000634 7.4e-20 101.3 63 84.1
Solyc12g062650.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.8e-19 99.4 81 63.0
HanXRQChr12g0386341 Helianthus annuus HOM05D000216 ORTHO05D000634 3.7e-19 99.0 63 82.5
HanXRQChr11g0322741 Helianthus annuus HOM05D000216 ORTHO05D000634 1.8e-18 96.7 61 80.3
Lsat_1_v5_gn_3_118020 Lactuca sativa HOM05D000216 ORTHO05D000634 5.3e-18 95.1 61 80.3
Glyma.02G221400 Glycine max HOM05D000216 ORTHO05D000634 9.1e-18 94.4 62 69.4
Solyc04g018250.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 9.1e-18 94.4 90 60.0
CAN.G939.13 Capsicum annuum HOM05D000216 ORTHO05D000634 2.0e-17 93.2 50 84.0
Solyc07g021290.1 Solanum lycopersicum HOM05D000216 ORTHO05D000634 2.6e-17 92.8 61 73.8
BolSC45t60937H Brassica oleracea HOM05D000216 ORTHO05D000634 7.7e-17 91.3 50 84.0
Lsat_1_v5_gn_4_163961 Lactuca sativa HOM05D000216 ORTHO05D003518 1.7e-16 90.1 66 69.7
Gohir.D10G123250 Gossypium hirsutum HOM05D000216 ORTHO05D000634 6.5e-16 88.2 63 69.8
CAN.G1542.7 Capsicum annuum HOM05D000216 ORTHO05D000634 1.1e-15 87.4 71 69.0
AUR62041877 Chenopodium quinoa HOM05D000216 ORTHO05D000634 4.2e-15 85.5 49 83.7
Gorai.011G135800 Gossypium raimondii HOM05D000216 ORTHO05D000634 9.4e-15 84.3 156 38.5
Nitab4.5_0016007g0020 Nicotiana tabacum HOM05D000216 ORTHO05D000634 9.4e-15 84.3 73 65.8
HPP92_021700 Vanilla planifolia HOM05D000216 ORTHO05D000634 5.2e-13 78.6 49 81.6
Lsat_1_v5_gn_3_118000 Lactuca sativa HOM05D000216 ORTHO05D000634 6.7e-13 78.2 45 77.8
SGA_v2.0_scaffold61G21222 Striga asiatica HOM05D000540 ORTHO05D000681 1.5e-12 77.0 90 54.4
SEGI_00070 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 2.2e-11 73.2 45 80.0
SEGI_01684 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.2e-11 73.2 45 80.0
SEGI_03518 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 2.2e-11 73.2 45 80.0
SEGI_05928 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 2.2e-11 73.2 45 80.0
SEGI_07796 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 2.2e-11 73.2 45 80.0
SEGI_17366 Sequoiadendron giganteum HOM05D000216 ORTHO05D004227 2.2e-11 73.2 45 80.0
SEGI_21477 Sequoiadendron giganteum HOM05D000216 ORTHO05D004227 2.2e-11 73.2 45 80.0
SEGI_22490 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 2.2e-11 73.2 45 80.0
SEGI_22758 Sequoiadendron giganteum HOM05D000388 ORTHO05D000473 2.2e-11 73.2 45 80.0
SEGI_38828 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 2.2e-11 73.2 45 80.0
SEGI_39307 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 2.2e-11 73.2 45 80.0
Oeu023333.1 Olea europaea HOM05D000216 ORTHO05D000634 2.8e-11 72.8 50 72.0
HPP92_016025 Vanilla planifolia HOM05D000216 ORTHO05D000634 3.7e-11 72.4 51 64.7
SEGI_02904 Sequoiadendron giganteum HOM05D000743 ORTHO05D000580 4.8e-11 72.0 45 80.0
arahy.Tifrunner.gnm1.ann1.7FJY1D Arachis hypogaea HOM05D000216 ORTHO05D000634 6.3e-11 71.6 54 66.7
SEGI_24942 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 6.3e-11 71.6 45 77.8
SEGI_01764 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 1.8e-10 70.1 45 75.6
SEGI_21589 Sequoiadendron giganteum HOM05D000964 ORTHO05D004047 1.8e-10 70.1 45 77.8
Dinv08908 Davidia involucrata HOM05D000216 ORTHO05D000634 3.1e-10 69.3 40 90.0
Gohir.D03G089666 Gossypium hirsutum HOM05D000216 ORTHO05D000634 3.5e-09 65.9 32 84.4
SEGI_13806 Sequoiadendron giganteum HOM05D000964 ORTHO05D003870 3.5e-09 65.9 45 71.1
Gorai.003G071700 Gossypium raimondii HOM05D000216 ORTHO05D000634 5.9e-09 65.1 32 81.2
HanXRQChr00c0988g0578131 Helianthus annuus HOM05D000216 ORTHO05D000634 1.7e-08 63.5 34 76.5
Nitab4.5_0000373g0230 Nicotiana tabacum HOM05D000216 ORTHO05D000634 1.1e-07 60.8 35 85.7
SEGI_15522 Sequoiadendron giganteum HOM05D000216 ORTHO05D000634 1.9e-07 60.1 71 47.9
Oeu010681.1 Olea europaea HOM05D000216 ORTHO05D000634 2.7e-06 56.2 32 81.2
SEGI_24812 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 3.6e-06 55.8 34 79.4
SEGI_31181 Sequoiadendron giganteum HOM05D000216 ORTHO05D003638 3.6e-06 55.8 34 79.4
SEGI_35543 Sequoiadendron giganteum HOM05D000216 ORTHO05D003518 3.6e-06 55.8 34 79.4


User provided reference genes

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