Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 3.9e-198 696.0 949 100.0
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 1.4e-107 395.2 319 68.0
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 2.6e-101 374.4 344 64.0
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 2.9e-100 370.9 324 66.7
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 9.2e-99 365.9 353 63.5
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 3.3e-96 357.5 360 59.7
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 2.8e-95 354.4 308 62.0
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 4.7e-95 353.6 319 62.4
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 4.7e-95 353.6 353 60.3
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 3.1e-94 350.9 348 60.6
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 1.5e-93 348.6 361 62.0
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 2.6e-93 347.8 336 60.1
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 3.4e-93 347.4 280 66.4
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 7.5e-93 346.3 302 65.6
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 6.4e-92 343.2 278 64.7
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 1.4e-91 342.0 292 65.1
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 1.9e-91 341.7 295 68.1
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 5.4e-91 340.1 318 63.8
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 5.4e-91 340.1 304 66.4
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 7.1e-91 339.7 348 61.5
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 7.1e-91 339.7 313 64.2
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 1.2e-90 339.0 331 61.0
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 2.1e-90 338.2 287 65.2
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 2.1e-90 338.2 298 60.4
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 2.1e-90 338.2 337 56.4
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 2.7e-90 337.8 347 59.9
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 6.0e-90 336.7 283 67.8
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 7.8e-90 336.3 296 64.5
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 1.3e-89 335.5 342 59.4
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 1.3e-89 335.5 305 60.7
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 1.7e-89 335.1 320 61.2
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 3.9e-89 334.0 309 64.1
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 5.1e-89 333.6 303 61.7
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 6.6e-89 333.2 264 69.3
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 8.6e-89 332.8 297 62.6
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 1.9e-88 331.6 316 63.6
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 3.3e-88 330.9 317 63.4
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 2.1e-87 328.2 335 59.7
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 3.6e-87 327.4 353 56.7
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 1.1e-86 325.9 193 79.8
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.1e-86 325.9 283 63.3
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 1.8e-86 325.1 322 58.1
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 2.4e-86 324.7 299 61.9
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 6.8e-86 323.2 357 55.5
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 6.8e-86 323.2 282 67.7
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 2.0e-85 321.6 188 83.0
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 2.6e-85 321.2 265 67.2
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 2.6e-85 321.2 265 67.2
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 3.4e-85 320.9 305 60.0
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 5.8e-85 320.1 319 59.6
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 7.6e-85 319.7 307 59.6
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 9.9e-85 319.3 352 54.0
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 2.2e-84 318.2 276 65.6
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 2.4e-83 314.7 353 56.1
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 2.4e-83 314.7 248 64.5
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 5.4e-83 313.5 279 65.6
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 9.2e-83 312.8 329 58.4
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 9.2e-83 312.8 260 63.5
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 1.2e-82 312.4 336 53.6
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 1.2e-82 312.4 307 59.3
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 1.6e-82 312.0 328 58.8
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 3.5e-82 310.8 316 59.5
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 1.7e-81 308.5 315 55.6
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 3.0e-81 307.8 347 54.5
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 5.1e-81 307.0 286 62.6
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 8.7e-81 306.2 324 57.7
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 1.9e-80 305.1 285 62.1
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 7.3e-80 303.1 324 58.0
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 3.6e-79 300.8 300 59.7
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 6.2e-79 300.1 341 55.4
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 1.1e-78 299.3 300 59.7
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 2.4e-78 298.1 203 72.4
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 6.9e-78 296.6 313 56.2
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 1.2e-77 295.8 313 56.2
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 2.4e-75 288.1 301 57.8
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 2.4e-75 288.1 331 49.5
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 7.1e-75 286.6 273 62.6
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 2.1e-74 285.0 300 54.7
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 3.5e-74 284.3 314 56.1
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 7.8e-74 283.1 319 56.7
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 1.3e-73 282.3 358 55.9
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 1.7e-73 282.0 313 57.2
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 3.9e-73 280.8 274 61.3
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 5.6e-72 276.9 252 62.3
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 1.3e-71 275.8 313 55.6
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 1.6e-71 275.4 336 53.6
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 8.1e-71 273.1 341 49.6
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 1.8e-70 271.9 199 68.3
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 2.4e-70 271.6 346 52.0
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 3.1e-70 271.2 309 55.3
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 9.9e-69 266.2 335 49.3
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 1.3e-65 255.8 318 52.5
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 5.1e-65 253.8 318 49.7
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 1.1e-62 246.1 147 81.0
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 1.1e-62 246.1 143 83.2
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 1.2e-61 242.7 311 46.3
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 3.4e-61 241.1 188 64.9
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 6.0e-58 230.3 151 74.2
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.6e-55 222.2 165 64.8
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 5.3e-54 217.2 130 83.1
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 2.3e-49 201.8 190 58.9
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 8.7e-49 199.9 185 50.8
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 1.4e-46 192.6 127 75.6
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 1.7e-44 185.7 217 44.7
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 1.4e-43 182.6 203 45.8
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 2.7e-34 151.8 182 44.0
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 6.1e-34 150.6 182 44.0
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 8.8e-33 146.7 197 43.1
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 2.2e-31 142.1 188 38.8
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 8.2e-31 140.2 79 82.3
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 2.4e-30 138.7 81 79.0
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 5.3e-30 137.5 81 80.2
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 3.5e-29 134.8 85 74.1
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 7.7e-29 133.7 81 79.0
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 1.0e-28 133.3 194 40.7
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 2.9e-28 131.7 112 58.0
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 1.5e-27 129.4 130 55.4
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 1.9e-27 129.0 78 75.6
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 1.9e-27 129.0 78 69.2
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 2.5e-27 128.6 86 72.1
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.2e-27 128.3 84 71.4
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 1.2e-26 126.3 78 75.6
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 1.2e-26 126.3 119 61.3
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 1.6e-26 125.9 77 75.3
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 3.6e-26 124.8 86 68.6
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 5.7e-24 117.5 80 68.8
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 9.7e-24 116.7 72 76.4
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 2.8e-23 115.2 73 71.2
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 2.7e-18 98.6 70 71.4
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 6.1e-18 97.4 220 37.3
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 6.3e-15 87.4 46 87.0
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 6.5e-12 77.4 43 81.4
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 4.2e-11 74.7 48 70.8
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 1.2e-10 73.2 145 31.7
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 1.6e-10 72.8 46 71.7
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 8.0e-10 70.5 45 73.3
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 1.2e-08 66.6 44 70.5
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 1.2e-08 66.6 44 70.5
ATR0680G306 Amborella trichopoda HOM05D000604 ORTHO05D004856 8.3e-07 60.5 140 30.7
ATR0304G030 Amborella trichopoda HOM05D000142 ORTHO05D010028 1.1e-06 60.1 93 37.6
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 2.4e-06 58.9 160 29.4
HPP92_006129 Vanilla planifolia HOM05D000142 ORTHO05D010028 3.1e-06 58.5 98 36.7
Cpa.g.sc192.5 Carica papaya HOM05D000604 ORTHO05D004856 9.1e-06 57.0 142 30.3


User provided reference genes

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