Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 2.2e-252 875.2 445 100.0
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 1.0e-185 653.7 446 74.0
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 5.5e-171 604.7 446 70.2
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 8.0e-170 600.9 447 69.8
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 2.2e-164 582.8 445 69.4
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 1.9e-163 579.7 447 68.0
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 2.7e-162 575.9 447 67.6
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 1.8e-161 573.2 443 64.8
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 6.8e-161 571.2 449 66.6
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 1.2e-160 570.5 452 65.7
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 1.3e-159 567.0 452 66.6
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.7e-159 565.5 447 66.2
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 4.8e-159 565.1 450 66.7
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 6.3e-159 564.7 450 66.4
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 1.1e-158 563.9 447 66.0
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.4e-158 563.5 460 65.0
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 3.1e-158 562.4 447 66.2
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.4e-158 561.6 447 65.8
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 7.0e-158 561.2 449 66.1
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 9.1e-158 560.8 456 66.0
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 9.1e-158 560.8 430 68.1
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 1.2e-157 560.5 441 67.1
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 2.0e-157 559.7 447 66.7
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 3.5e-157 558.9 467 64.5
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 3.5e-157 558.9 467 64.5
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 4.5e-157 558.5 455 65.9
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 1.7e-156 556.6 452 67.3
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 2.3e-156 556.2 456 62.5
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 2.9e-156 555.8 446 65.5
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 2.9e-156 555.8 452 66.4
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 3.8e-156 555.4 445 64.9
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 5.0e-156 555.1 452 66.8
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 8.6e-156 554.3 446 65.7
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 8.6e-156 554.3 449 65.3
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 8.6e-156 554.3 452 66.8
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 2.8e-154 549.3 449 65.0
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 3.6e-154 548.9 448 63.8
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 4.7e-154 548.5 433 67.4
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 6.1e-154 548.1 447 65.3
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 1.4e-153 547.0 452 62.8
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 1.8e-153 546.6 442 66.7
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 4.0e-153 545.4 430 67.9
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 4.0e-153 545.4 459 64.3
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 5.2e-153 545.0 445 64.7
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 6.8e-153 544.7 449 65.0
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 3.4e-152 542.3 451 62.7
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 5.7e-152 541.6 452 65.5
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 7.5e-152 541.2 454 63.9
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 9.8e-152 540.8 447 64.2
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.7e-151 540.0 452 65.3
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 2.8e-151 539.3 445 65.4
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 3.7e-151 538.9 439 62.9
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 8.3e-151 537.7 454 62.3
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 8.3e-151 537.7 450 63.3
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 8.3e-151 537.7 437 66.6
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 1.1e-150 537.3 451 64.3
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 3.1e-150 535.8 450 63.1
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 3.1e-150 535.8 448 62.5
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 4.1e-150 535.4 459 63.4
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 4.1e-150 535.4 449 63.5
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 2.7e-149 532.7 450 65.3
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 3.5e-149 532.3 445 63.8
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 7.8e-149 531.2 440 64.8
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 1.0e-148 530.8 439 65.4
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 1.7e-148 530.0 439 64.5
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 2.3e-148 529.6 503 59.4
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 2.9e-148 529.3 439 64.2
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.9e-148 528.9 463 62.0
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 1.6e-146 523.5 439 63.8
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 2.8e-146 522.7 463 62.2
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 3.6e-146 522.3 440 65.0
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 1.0e-145 520.8 440 62.7
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 6.8e-145 518.1 439 63.6
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 6.8e-145 518.1 439 63.6
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 5.8e-144 515.0 441 63.0
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.8e-144 515.0 443 62.1
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 9.8e-144 514.2 402 68.4
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 1.3e-143 513.8 440 63.0
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 1.3e-143 513.8 406 65.3
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 1.9e-142 510.0 444 61.9
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 1.9e-142 510.0 440 62.7
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 3.6e-138 495.7 451 59.9
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 1.8e-137 493.4 444 59.2
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 8.3e-135 484.6 546 52.4
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 2.4e-134 483.0 447 60.2
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.2e-133 480.7 446 59.4
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 2.7e-133 479.6 457 56.5
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 6.0e-133 478.4 428 61.9
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.9e-131 473.4 450 56.9
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 1.1e-129 467.6 356 67.7
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 5.2e-129 465.3 454 55.9
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 3.4e-128 462.6 419 60.9
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 5.1e-124 448.7 468 56.8
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 2.1e-122 443.4 262 82.8
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 1.1e-121 441.0 430 57.4
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 1.4e-121 440.7 430 58.4
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.5e-120 437.2 259 81.5
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 2.1e-117 426.8 442 54.1
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 1.7e-116 423.7 246 82.5
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 1.5e-115 420.6 330 66.1
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 4.4e-112 409.1 436 52.1
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 9.9e-112 407.9 251 78.9
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 1.0e-108 397.9 436 50.9
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.5e-107 394.0 360 59.4
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 3.2e-102 376.3 407 52.6
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 5.4e-102 375.6 458 50.9
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 8.7e-100 368.2 223 80.3
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 1.4e-97 360.9 417 50.4
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 1.0e-95 354.8 439 49.2
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 4.6e-93 345.9 482 43.2
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 6.1e-85 318.9 367 50.4
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 4.2e-78 296.2 315 58.4
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 1.8e-76 290.8 292 59.9
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 6.7e-76 288.9 294 58.2
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 3.8e-71 273.1 326 53.1
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 4.7e-69 266.2 290 56.2
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 9.7e-67 258.5 260 51.9
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 3.1e-65 253.4 273 53.1
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 2.9e-63 246.9 251 57.0
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 4.8e-58 229.6 210 61.4
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 1.9e-54 217.6 252 46.8
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 7.2e-54 215.7 406 38.7
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 9.8e-51 205.3 281 42.0
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 3.8e-47 193.4 219 51.1
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 6.5e-47 192.6 250 43.6
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 8.5e-47 192.2 136 65.4
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 2.8e-42 177.2 106 85.8
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 2.3e-39 167.5 86 88.4
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 1.5e-38 164.9 98 85.7
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 1.8e-33 147.9 207 45.4
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 3.5e-32 143.7 190 46.3
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 5.0e-31 139.8 74 85.1
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 9.5e-30 135.6 89 67.4
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 8.0e-29 132.5 87 70.1
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 3.1e-28 130.6 85 72.9
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 2.6e-27 127.5 262 33.2
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 1.1e-20 105.5 80 62.5
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.8e-20 104.8 187 39.6
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 6.6e-15 86.3 69 63.8
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 9.5e-14 82.4 187 34.8
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 9.5e-14 82.4 61 60.7
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 3.1e-12 77.4 93 47.3
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 3.1e-12 77.4 82 52.4
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 3.1e-12 77.4 67 55.2
arahy.Tifrunner.gnm1.ann1.638LQB Arachis hypogaea HOM05D000561 ORTHO05D000514 3.3e-06 57.4 37 75.7
TWI15G0704 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 5.6e-06 56.6 44 61.4


User provided reference genes

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