Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc05g0002390 Simmondsia chinensis HOM05D004922 ORTHO05D005990 3.9e-44 181.0 89 100.0
Ah.06g191400 Amaranthus hybridus HOM05D004922 ORTHO05D005990 4.4e-43 177.6 89 97.8
EL10Ac4g08876 Beta vulgaris HOM05D004922 ORTHO05D005990 5.7e-43 177.2 89 96.6
MD05G1178700 Malus domestica HOM05D004922 ORTHO05D005990 1.3e-42 176.0 89 96.6
Actinidia35950 Actinidia chinensis HOM05D004922 ORTHO05D005990 2.2e-42 175.3 89 95.5
SalBow3G3780 Salvia bowleyana HOM05D004922 ORTHO05D005990 2.2e-42 175.3 89 95.5
CSS0022478 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 2.8e-42 174.9 89 95.5
CSS0038803 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 2.8e-42 174.9 89 95.5
Haze_24774 Corylus avellana HOM05D004922 ORTHO05D005990 2.8e-42 174.9 89 95.5
Nn7g37520 Nelumbo nucifera HOM05D004922 ORTHO05D005990 2.8e-42 174.9 89 95.5
Nitab4.5_0003904g0020 Nicotiana tabacum HOM05D004922 ORTHO05D005990 2.8e-42 174.9 89 94.4
RcHm_v2.0_Chr2g0121221 Rosa chinensis HOM05D004922 ORTHO05D005990 3.7e-42 174.5 86 98.8
THA.LOC104818942 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 3.7e-42 174.5 86 98.8
THA.LOC104827350 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 3.7e-42 174.5 86 98.8
Peaxi162Scf00122g00811 Petunia axillaris HOM05D004922 ORTHO05D005990 4.8e-42 174.1 86 97.7
Phvul.001G007400 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 4.8e-42 174.1 86 98.8
CANSAT01G0689 Cannabis sativa HOM05D004922 ORTHO05D005990 6.3e-42 173.7 86 98.8
CANSAT01G1757 Cannabis sativa HOM05D004922 ORTHO05D005990 6.3e-42 173.7 86 98.8
CiPaw.03G151500 Carya illinoinensis HOM05D004922 ORTHO05D005990 6.3e-42 173.7 89 94.4
Solyc09g091500.3 Solanum lycopersicum HOM05D004922 ORTHO05D005990 6.3e-42 173.7 89 95.5
Sopen09g034430 Solanum pennellii HOM05D004922 ORTHO05D005990 6.3e-42 173.7 89 95.5
PGSC0003DMG400029651 Solanum tuberosum HOM05D004922 ORTHO05D005990 6.3e-42 173.7 89 95.5
CAN.G500.78 Capsicum annuum HOM05D004922 ORTHO05D005990 8.2e-42 173.3 88 95.5
Phvul.002G196500 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 8.2e-42 173.3 86 97.7
PGR044G2430 Punica granatum HOM05D004922 ORTHO05D005990 8.2e-42 173.3 86 97.7
Glyma.05G127900 Glycine max HOM05D004922 ORTHO05D005990 1.1e-41 172.9 86 97.7
MD10G1167200 Malus domestica HOM05D004922 ORTHO05D005990 1.1e-41 172.9 89 94.4
Atru.chr8.785 Acer truncatum HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
arahy.Tifrunner.gnm1.ann1.AXK6HV Arachis hypogaea HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
arahy.Tifrunner.gnm1.ann1.N94L43 Arachis hypogaea HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
Ca_18278_v3 Cicer arietinum L. HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
COL.COLO4_37469 Corchorus olitorius HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
Dinv04668 Davidia involucrata HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
Duzib138G1451 Durio zibethinus HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
Gohir.A11G136000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
Hma1.2p1_1061F.1_g253320 Hydrangea macrophylla HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
Manes.12G042100 Manihot esculenta HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
Manes.13G044200 Manihot esculenta HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
Medtr4g094600 Medicago truncatula HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
Psat7g092040 Pisum sativum HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
Potri.001G277900 Populus trichocarpa HOM05D004922 ORTHO05D005990 1.4e-41 172.6 89 94.4
Potri.009G072500 Populus trichocarpa HOM05D004922 ORTHO05D005990 1.4e-41 172.6 89 94.4
Sabra16G0171900 Salix brachista HOM05D004922 ORTHO05D005990 1.4e-41 172.6 89 94.4
Sed0006654 Sechium edule HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
Thecc.01G228800 Theobroma cacao HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
TPR.G4933 Trifolium pratense HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
TWI09G0408 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
TWI59G0402 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
TAR365G0710 Trochodendron aralioides HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
TAR636G3017 Trochodendron aralioides HOM05D004922 ORTHO05D005990 1.4e-41 172.6 86 97.7
ClCG07G001790 Citrullus lanatus HOM05D004922 ORTHO05D005990 1.8e-41 172.2 86 96.5
QL09p007931 Quercus lobata HOM05D004922 ORTHO05D005990 1.8e-41 172.2 85 97.6
QL09p044611 Quercus lobata HOM05D004922 ORTHO05D005990 1.8e-41 172.2 85 97.6
Sed0024440 Sechium edule HOM05D004922 ORTHO05D005990 1.8e-41 172.2 86 96.5
TPR.G1594 Trifolium pratense HOM05D004922 ORTHO05D005990 1.8e-41 172.2 86 96.5
Migut.N00343 Erythranthe guttata HOM05D004922 ORTHO05D005990 2.4e-41 171.8 89 92.1
Prupe.8G205100 Prunus persica HOM05D004922 ORTHO05D005990 2.4e-41 171.8 86 97.7
Cc01_g17260 Coffea canephora HOM05D004922 ORTHO05D005990 3.1e-41 171.4 86 96.5
Dinv19219 Davidia involucrata HOM05D004922 ORTHO05D005990 3.1e-41 171.4 86 96.5
Duzib133G0821 Durio zibethinus HOM05D004922 ORTHO05D005990 3.1e-41 171.4 86 96.5
Eucgr.H03678 Eucalyptus grandis HOM05D004922 ORTHO05D005990 3.1e-41 171.4 86 96.5
FvH4_1g24390 Fragaria vesca HOM05D004922 ORTHO05D005990 3.1e-41 171.4 86 96.5
FAN19G2048 Fragaria x ananassa HOM05D004922 ORTHO05D005990 3.1e-41 171.4 86 96.5
FAN23G2197 Fragaria x ananassa HOM05D004922 ORTHO05D005990 3.1e-41 171.4 86 96.5
FAN28G0422 Fragaria x ananassa HOM05D004922 ORTHO05D005990 3.1e-41 171.4 86 96.5
Lalb_Chr07g0188871 Lupinus albus HOM05D004922 ORTHO05D005990 3.1e-41 171.4 86 96.5
Gohir.A07G155600 Gossypium hirsutum HOM05D004922 ORTHO05D005990 4.1e-41 171.0 86 96.5
Gohir.D11G142400 Gossypium hirsutum HOM05D004922 ORTHO05D005990 4.1e-41 171.0 86 96.5
Gorai.007G152700 Gossypium raimondii HOM05D004922 ORTHO05D005990 4.1e-41 171.0 86 96.5
PSO210G2196 Papaver somniferum HOM05D004922 ORTHO05D005990 4.1e-41 171.0 87 94.3
PSO591G0020 Papaver somniferum HOM05D004922 ORTHO05D005990 4.1e-41 171.0 87 94.3
PSO832G2289 Papaver somniferum HOM05D004922 ORTHO05D005990 4.1e-41 171.0 87 94.3
Gohir.D07G162000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 5.3e-41 170.6 86 95.3
Lj4g0004779 Lotus japonicus HOM05D004922 ORTHO05D005990 5.3e-41 170.6 86 96.5
CDE02G4734 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 7.0e-41 170.2 87 94.3
MELO3C018062.2 Cucumis melo HOM05D004922 ORTHO05D005990 7.0e-41 170.2 85 97.6
CsaV3_3G028790 Cucumis sativus L. HOM05D004922 ORTHO05D005990 7.0e-41 170.2 85 97.6
Gorai.001G185300 Gossypium raimondii HOM05D004922 ORTHO05D005990 9.1e-41 169.9 86 95.3
Sp2g19260 Schrenkiella parvula HOM05D004922 ORTHO05D005990 9.1e-41 169.9 86 94.2
GSVIVG01029076001 Vitis vinifera HOM05D004922 ORTHO05D005990 9.1e-41 169.9 89 95.5
Ciclev10022785m.g Citrus clementina HOM05D004922 ORTHO05D005990 1.2e-40 169.5 86 95.3
ECA236G1627 Erigeron canadensis HOM05D004922 ORTHO05D005990 1.2e-40 169.5 86 95.3
HanXRQChr10g0287281 Helianthus annuus HOM05D004922 ORTHO05D005990 1.2e-40 169.5 86 95.3
Aqoxy1G00374 Aquilegia oxysepala HOM05D004922 ORTHO05D005990 1.5e-40 169.1 89 94.4
Thhalv10005202m.g Eutrema salsugineum HOM05D004922 ORTHO05D005990 1.5e-40 169.1 85 95.3
Lalb_Chr13g0291421 Lupinus albus HOM05D004922 ORTHO05D005990 1.5e-40 169.1 86 95.3
HPP92_027867 Vanilla planifolia HOM05D004922 ORTHO05D005990 2.0e-40 168.7 84 95.2
CARHR182850 Cardamine hirsuta HOM05D004922 ORTHO05D005990 2.6e-40 168.3 86 93.0
AT5G48870 Arabidopsis thaliana HOM05D004922 ORTHO05D005990 4.5e-40 167.5 83 96.4
Migut.D00519 Erythranthe guttata HOM05D004922 ORTHO05D005990 4.5e-40 167.5 86 93.0
HanXRQChr04g0110651 Helianthus annuus HOM05D004922 ORTHO05D005990 4.5e-40 167.5 86 94.2
Lsat_1_v5_gn_8_90161 Lactuca sativa HOM05D004922 ORTHO05D005990 4.5e-40 167.5 86 94.2
Lalb_Chr11g0067741 Lupinus albus HOM05D004922 ORTHO05D005990 4.5e-40 167.5 86 93.0
Os05g0389300 Oryza sativa ssp. japonica HOM05D004922 ORTHO05D005990 4.5e-40 167.5 85 96.5
Zm00001eb287110 Zea mays HOM05D004922 ORTHO05D005990 4.5e-40 167.5 85 96.5
Zm00001eb350780 Zea mays HOM05D004922 ORTHO05D005990 4.5e-40 167.5 85 96.5
Carub.0008s0859 Capsella rubella HOM05D004922 ORTHO05D005990 5.9e-40 167.2 83 95.2
SEGI_22867 Sequoiadendron giganteum HOM05D004922 ORTHO05D005990 7.7e-40 166.8 83 96.4
CSS0043203 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 1.0e-39 166.4 86 94.2
Pp3c1_36020 Physcomitrium patens HOM05D004922 ORTHO05D005990 1.3e-39 166.0 86 91.9
AL8G22040 Arabidopsis lyrata HOM05D004922 ORTHO05D005990 1.7e-39 165.6 83 95.2
Nitab4.5_0002920g0030 Nicotiana tabacum HOM05D004922 ORTHO05D005990 2.2e-39 165.2 83 95.2
SMO118G0467 Selaginella moellendorffii HOM05D004922 ORTHO05D005990 5.0e-39 164.1 83 94.0
Mapoly0016s0054 Marchantia polymorpha HOM05D004922 ORTHO05D005990 8.5e-39 163.3 83 94.0
BcaB04g19588 Brassica carinata HOM05D004922 ORTHO05D005990 1.1e-38 162.9 86 89.5
AagrBONN_evm.TU.Sc2ySwM_228.5635 Anthoceros agrestis HOM05D004922 ORTHO05D005990 2.5e-38 161.8 84 91.7
BcaB07g30046 Brassica carinata HOM05D004922 ORTHO05D005990 2.5e-38 161.8 86 90.7
BcaC03g17679 Brassica carinata HOM05D004922 ORTHO05D005990 2.5e-38 161.8 86 90.7
BcaC04g23758 Brassica carinata HOM05D004922 ORTHO05D005990 2.5e-38 161.8 86 90.7
A02p37760 Brassica napus HOM05D004922 ORTHO05D005990 2.5e-38 161.8 86 90.7
A09p04660 Brassica napus HOM05D004922 ORTHO05D005990 2.5e-38 161.8 86 90.7
C02p56860 Brassica napus HOM05D004922 ORTHO05D005990 2.5e-38 161.8 86 90.7
C09p04970 Brassica napus HOM05D004922 ORTHO05D005990 2.5e-38 161.8 86 90.7
BolC2t11755H Brassica oleracea HOM05D004922 ORTHO05D005990 2.5e-38 161.8 86 90.7
BraA02t08759Z Brassica rapa HOM05D004922 ORTHO05D005990 2.5e-38 161.8 86 90.7
BraA09t36102Z Brassica rapa HOM05D004922 ORTHO05D005990 2.5e-38 161.8 86 90.7
BolC9t53426H Brassica oleracea HOM05D004922 ORTHO05D005990 3.2e-38 161.4 86 89.5
DCAR_000537 Daucus carota HOM05D004922 ORTHO05D005990 3.2e-38 161.4 99 82.8
unitig_22.g5302 Utricularia gibba HOM05D004922 ORTHO05D005990 3.2e-38 161.4 87 86.2
Sabra09G0054700 Salix brachista HOM05D004922 ORTHO05D005990 3.6e-37 157.9 83 92.8
Peaxi162Scf00047g01222 Petunia axillaris HOM05D004922 ORTHO05D005990 6.1e-37 157.1 79 96.2
CiPaw.04G107000 Carya illinoinensis HOM05D004922 ORTHO05D005990 8.0e-37 156.8 79 96.2
Glyma.08G082700 Glycine max HOM05D004922 ORTHO05D005990 1.4e-36 156.0 76 100.0
Rhsim02G0053600 Rhododendron simsii HOM05D004922 ORTHO05D005990 3.0e-36 154.8 79 94.9
Aa31LG5G17580 Aethionema arabicum HOM05D004922 ORTHO05D005990 3.9e-36 154.5 78 94.9
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 8.8e-36 153.3 77 96.1
MCO15G079 Micromonas commoda HOM05D004922 ORTHO05D005990 1.1e-35 152.9 82 85.4
Cpa.g.sc3.67 Carica papaya HOM05D004922 ORTHO05D005990 2.6e-35 151.8 75 97.3
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 2.6e-35 151.8 83 88.0
FAN26G0321 Fragaria x ananassa HOM05D004922 ORTHO05D005990 3.3e-35 151.4 75 97.3
FAN26G0401 Fragaria x ananassa HOM05D004922 ORTHO05D005990 3.3e-35 151.4 75 97.3
PRCOL_00003510 Prasinoderma coloniale HOM05D004922 ORTHO05D005990 2.4e-33 145.2 87 72.4
HPP92_006337 Vanilla planifolia HOM05D004922 ORTHO05D005990 3.6e-29 131.3 84 79.8
Actinidia39954 Actinidia chinensis HOM05D004922 ORTHO05D005990 1.8e-28 129.0 87 80.5
AUR62033984 Chenopodium quinoa HOM05D004922 ORTHO05D005990 1.5e-27 125.9 63 96.8
SGA_v2.0_scaffold8G04653 Striga asiatica HOM05D004922 ORTHO05D005990 1.5e-27 125.9 105 65.7
CDE05G0301 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 1.8e-25 119.0 58 96.6
Haze_26353 Corylus avellana HOM05D004922 ORTHO05D005990 5.0e-23 110.9 80 60.0
Oeu016707.1 Olea europaea HOM05D004922 ORTHO05D005990 1.5e-22 109.4 53 98.1
CARHR182860 Cardamine hirsuta HOM05D004922 ORTHO05D005990 1.9e-22 109.0 72 79.2
HanXRQChr11g0331491 Helianthus annuus HOM05D004922 ORTHO05D005990 2.5e-22 108.6 63 85.7
ATR0580G296 Amborella trichopoda HOM05D004922 ORTHO05D005990 1.6e-21 105.9 53 96.2
DCAR_023130 Daucus carota HOM05D004922 ORTHO05D005990 2.7e-21 105.1 53 94.3
MD10G1019300 Malus domestica HOM05D004922 ORTHO05D005990 6.1e-21 104.0 53 92.5
MD00G1053800 Malus domestica HOM05D004922 ORTHO05D005990 8.0e-21 103.6 53 94.3
Hund05521 Selenicereus undatus HOM05D004922 ORTHO05D005990 5.2e-20 100.9 50 94.0
Atru.chr10.1425 Acer truncatum HOM05D004922 ORTHO05D005990 4.4e-19 97.8 50 92.0
TPR.G35576 Trifolium pratense HOM05D004922 ORTHO05D005990 2.3e-12 75.5 86 52.3
EL10Ac1g01454 Beta vulgaris HOM05D004922 ORTHO05D005990 1.1e-09 66.6 31 96.8
QL01p002563 Quercus lobata HOM05D004922 ORTHO05D005990 1.6e-08 62.8 34 85.3
AagrBONN_evm.TU.Sc2ySwM_228.3104 Anthoceros agrestis HOM05D003522 ORTHO05D003993 4.3e-06 54.7 91 35.2
Atru.chr7.568 Acer truncatum HOM05D003522 ORTHO05D003993 9.5e-06 53.5 77 39.0
COL.COLO4_22865 Corchorus olitorius HOM05D003522 ORTHO05D003993 9.5e-06 53.5 77 37.7


User provided reference genes

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