Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SalBow1G8295 Salvia bowleyana HOM05D003924 ORTHO05D005216 0.0e+00 2235.7 1217 100.0
MSTRG.9355 Avicennia marina HOM05D003924 ORTHO05D005216 0.0e+00 1865.5 1226 81.7
Migut.D01216 Erythranthe guttata HOM05D003924 ORTHO05D005216 0.0e+00 1790.8 1230 79.7
Dinv17348 Davidia involucrata HOM05D003924 ORTHO05D005216 0.0e+00 1708.7 1226 78.1
Sopen04g020010 Solanum pennellii HOM05D003924 ORTHO05D005216 0.0e+00 1708.3 1240 76.3
Cfa001582 Carpinus fangiana HOM05D003924 ORTHO05D005216 0.0e+00 1706.4 1228 78.0
Cc09_g02440 Coffea canephora HOM05D003924 ORTHO05D005216 0.0e+00 1701.0 1231 77.1
CAN.G742.17 Capsicum annuum HOM05D003924 ORTHO05D005216 0.0e+00 1694.1 1242 76.0
Thecc.10G066000 Theobroma cacao HOM05D003924 ORTHO05D005216 0.0e+00 1679.1 1227 76.7
DCAR_027685 Daucus carota HOM05D003924 ORTHO05D005216 0.0e+00 1676.0 1230 75.9
RcHm_v2.0_Chr3g0482831 Rosa chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1673.3 1226 76.6
Oeu033837.1 Olea europaea HOM05D003924 ORTHO05D005216 0.0e+00 1670.6 1185 78.6
FvH4_4g12630 Fragaria vesca HOM05D003924 ORTHO05D005216 0.0e+00 1667.9 1227 77.3
CSS0019567 Camellia sinensis var. sinensis HOM05D003924 ORTHO05D005216 0.0e+00 1667.5 1228 76.6
FAN17G0927 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1666.0 1227 77.1
FAN22G0546 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1666.0 1227 76.9
MD01G1113500 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1666.0 1232 75.2
GSVIVG01016353001 Vitis vinifera HOM05D003924 ORTHO05D005216 0.0e+00 1665.6 1227 77.2
unitig_899.g14816 Utricularia gibba HOM05D003924 ORTHO05D005216 0.0e+00 1662.9 1227 74.2
COL.COLO4_23765 Corchorus olitorius HOM05D003924 ORTHO05D005216 0.0e+00 1660.6 1226 75.8
Potri.010G216100 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1660.6 1228 76.5
CiPaw.01G277600 Carya illinoinensis HOM05D003924 ORTHO05D005216 0.0e+00 1647.9 1228 76.4
Potri.008G045400 Populus trichocarpa HOM05D003924 ORTHO05D005216 0.0e+00 1645.9 1228 76.5
Lj8C94T13 Lonicera japonica HOM05D003924 ORTHO05D005216 0.0e+00 1644.8 1184 76.3
Hma1.2p1_3877F.1_g337880 Hydrangea macrophylla HOM05D003924 ORTHO05D005216 0.0e+00 1642.9 1168 79.2
Prupe.2G220200 Prunus persica HOM05D003924 ORTHO05D005216 0.0e+00 1640.9 1201 75.9
Sabra08G0031600 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1634.8 1258 74.8
MD07G1181100 Malus domestica HOM05D003924 ORTHO05D005216 0.0e+00 1633.6 1228 75.4
TAR623G0957 Trochodendron aralioides HOM05D003924 ORTHO05D005216 0.0e+00 1629.8 1234 74.8
Actinidia03018 Actinidia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1624.8 1255 72.7
Ciclev10018539m.g Citrus clementina HOM05D003924 ORTHO05D005216 0.0e+00 1623.2 1290 71.9
VMungo1309G1679 Vigna mungo HOM05D003924 ORTHO05D005216 0.0e+00 1622.8 1226 73.8
FAN07G1557 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1621.7 1226 75.9
Atru.chr2.540 Acer truncatum HOM05D003924 ORTHO05D005216 0.0e+00 1618.2 1229 74.4
vmacro17942 Vaccinium macrocarpon HOM05D003924 ORTHO05D005216 0.0e+00 1618.2 1250 74.6
CsaV3_5G026020 Cucumis sativus L. HOM05D003924 ORTHO05D005216 0.0e+00 1615.5 1233 72.9
Eucgr.G02792 Eucalyptus grandis HOM05D003924 ORTHO05D005216 0.0e+00 1615.5 1222 75.2
MELO3C025497.2 Cucumis melo HOM05D003924 ORTHO05D005216 0.0e+00 1612.8 1232 72.8
arahy.Tifrunner.gnm1.ann1.VLH7KT Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1612.0 1208 75.0
Gorai.010G203700 Gossypium raimondii HOM05D003924 ORTHO05D005216 0.0e+00 1612.0 1235 74.3
Manes.07G101600 Manihot esculenta HOM05D003924 ORTHO05D005216 0.0e+00 1607.8 1236 74.9
Glyma.09G087900 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1602.4 1226 73.5
Phvul.009G216500 Phaseolus vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1600.9 1232 73.3
Gohir.A06G179002 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1600.5 1231 74.0
Lalb_Chr11g0073411 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1596.6 1229 71.7
PGR142G3475 Punica granatum HOM05D003924 ORTHO05D005216 0.0e+00 1595.9 1236 73.5
HanXRQChr14g0460881 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1594.3 1223 73.8
Medtr2g048630 Medicago truncatula HOM05D003924 ORTHO05D005216 0.0e+00 1593.9 1215 74.2
Lj6g0026487 Lotus japonicus HOM05D003924 ORTHO05D005216 0.0e+00 1592.8 1246 73.4
TWI15G1255 Tripterygium wilfordii HOM05D003924 ORTHO05D005216 0.0e+00 1591.6 1223 73.4
Sed0000671 Sechium edule HOM05D003924 ORTHO05D005216 0.0e+00 1591.2 1230 72.6
MBI19_g06147_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 0.0e+00 1590.9 1226 74.6
Gohir.D06G174100 Gossypium hirsutum HOM05D003924 ORTHO05D005216 0.0e+00 1586.2 1233 73.5
Ca_02521_v3 Cicer arietinum L. HOM05D003924 ORTHO05D005216 0.0e+00 1584.7 1216 73.8
Nn2g10624 Nelumbo nucifera HOM05D003924 ORTHO05D005216 0.0e+00 1584.7 1237 72.0
ECA238G4557 Erigeron canadensis HOM05D003924 ORTHO05D005216 0.0e+00 1575.8 1225 71.4
Aqoxy6G01538 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 0.0e+00 1574.7 1232 73.4
Lalb_Chr08g0233271 Lupinus albus HOM05D003924 ORTHO05D005216 0.0e+00 1572.4 1238 71.1
HanXRQChr07g0200911 Helianthus annuus HOM05D003924 ORTHO05D005216 0.0e+00 1568.9 1226 71.9
Duzib128G0369 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1564.3 1230 71.5
PSO339G1038 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1561.2 1222 71.7
TPR.G31980 Trifolium pratense HOM05D003924 ORTHO05D005216 0.0e+00 1555.8 1191 74.1
PSO384G1475 Papaver somniferum HOM05D003924 ORTHO05D005216 0.0e+00 1554.3 1195 73.5
THA.LOC104809987 Tarenaya hassleriana HOM05D003924 ORTHO05D005216 0.0e+00 1546.2 1224 69.0
ClCG09G020390 Citrullus lanatus HOM05D003924 ORTHO05D005216 0.0e+00 1540.0 1245 69.2
AUR62023249 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1532.3 1207 71.3
Hund16198 Selenicereus undatus HOM05D003924 ORTHO05D005216 0.0e+00 1530.4 1244 70.6
arahy.Tifrunner.gnm1.ann1.MQZ1GR Arachis hypogaea HOM05D003924 ORTHO05D005216 0.0e+00 1518.4 1212 71.4
Duzib114G0370 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1514.2 1222 70.8
Glyma.15G194000 Glycine max HOM05D003924 ORTHO05D005216 0.0e+00 1510.0 1156 73.1
FAN12G0529 Fragaria x ananassa HOM05D003924 ORTHO05D005216 0.0e+00 1506.1 1109 76.9
Lsat_1_v5_gn_2_116140 Lactuca sativa HOM05D003924 ORTHO05D005216 0.0e+00 1502.3 1196 72.2
Carub.0004s2131 Capsella rubella HOM05D003924 ORTHO05D005216 0.0e+00 1498.4 1229 69.5
EL10Ac2g04495 Beta vulgaris HOM05D003924 ORTHO05D005216 0.0e+00 1489.2 1302 66.6
Sp4g21570 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1488.8 1228 66.9
SpUn0018_0100 Schrenkiella parvula HOM05D003924 ORTHO05D005216 0.0e+00 1488.8 1228 66.9
Thhalv10016159m.g Eutrema salsugineum HOM05D003924 ORTHO05D005216 0.0e+00 1487.2 1225 66.9
Sabra10G0167200 Salix brachista HOM05D003924 ORTHO05D005216 0.0e+00 1483.0 1231 68.3
AT2G39260 Arabidopsis thaliana HOM05D003924 ORTHO05D005216 0.0e+00 1481.5 1225 68.8
AL4G36570 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 0.0e+00 1480.3 1208 70.0
CARHR134000 Cardamine hirsuta HOM05D003924 ORTHO05D005216 0.0e+00 1478.8 1224 68.1
Aa31LG5G20240 Aethionema arabicum HOM05D003924 ORTHO05D005216 0.0e+00 1473.8 1209 69.6
ATR0810G286 Amborella trichopoda HOM05D003924 ORTHO05D005216 0.0e+00 1472.2 1249 67.7
QL08p057163 Quercus lobata HOM05D003924 ORTHO05D005216 0.0e+00 1471.8 1433 62.9
BcaB01g03658 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1463.4 1230 67.5
BcaB01g03607 Brassica carinata HOM05D003924 ORTHO05D005216 0.0e+00 1462.2 1228 66.0
C03p26070 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1459.9 1233 67.4
CDE01G0014 Ceratophyllum demersum HOM05D003924 ORTHO05D005216 0.0e+00 1458.4 1226 68.8
BolC3t14991H Brassica oleracea HOM05D003924 ORTHO05D005216 0.0e+00 1456.4 1237 67.1
Zm00001eb247890 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1456.0 1222 67.8
A03p21980 Brassica napus HOM05D003924 ORTHO05D005216 0.0e+00 1455.3 1227 68.0
BraA03t11433Z Brassica rapa HOM05D003924 ORTHO05D005216 0.0e+00 1453.0 1233 67.6
Duzib106G1600 Durio zibethinus HOM05D003924 ORTHO05D005216 0.0e+00 1437.6 1228 68.9
Zm00001eb185340 Zea mays HOM05D003924 ORTHO05D005216 0.0e+00 1407.5 1215 65.8
AUR62023203 Chenopodium quinoa HOM05D003924 ORTHO05D005216 0.0e+00 1405.6 1212 66.1
Ah.16g101370 Amaranthus hybridus HOM05D003924 ORTHO05D005216 0.0e+00 1381.7 1204 67.0
Mapoly0202s0011 Marchantia polymorpha HOM05D003924 ORTHO05D005216 0.0e+00 1369.4 1256 62.5
Nitab4.5_0000561g0080 Nicotiana tabacum HOM05D003924 ORTHO05D005216 0.0e+00 1356.3 903 80.7
Pp3c11_19990 Physcomitrium patens HOM05D003924 ORTHO05D005216 0.0e+00 1349.0 1254 62.8
SMO116G0081 Selaginella moellendorffii HOM05D003924 ORTHO05D005216 0.0e+00 1339.3 1227 64.1
Haze_16947 Corylus avellana HOM05D003924 ORTHO05D005216 0.0e+00 1325.1 962 76.2
Cpa.g.sc1.275 Carica papaya HOM05D003924 ORTHO05D005216 0.0e+00 1320.1 899 76.9
Rhsim09G0154800 Rhododendron simsii HOM05D003924 ORTHO05D005216 0.0e+00 1298.1 1273 60.5
HPP92_017237 Vanilla planifolia HOM05D003924 ORTHO05D005216 0.0e+00 1176.8 869 73.3
Sc10g0000900 Simmondsia chinensis HOM05D003924 ORTHO05D005216 0.0e+00 1167.1 821 77.8
Peaxi162Scf01024g00323 Petunia axillaris HOM05D003924 ORTHO05D005216 0.0e+00 1144.0 791 79.6
CBR_g19436 Chara braunii HOM05D003924 ORTHO05D005216 0.0e+00 1137.9 1274 53.1
BcaB06g29071 Brassica carinata HOM05D003924 ORTHO05D005216 8.3e-312 1074.3 823 69.4
Rhsim03G0121700 Rhododendron simsii HOM05D003924 ORTHO05D005216 2.5e-311 1072.4 888 73.2
Solyc04g049770.4 Solanum lycopersicum HOM05D003924 ORTHO05D005216 6.8e-288 994.6 667 79.3
Psat1g019320 Pisum sativum HOM05D003924 ORTHO05D005216 1.6e-284 983.4 966 62.1
Nitab4.5_0000061g0390 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.1e-277 960.7 924 64.6
SEGI_38774 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.5e-274 949.5 744 71.4
SEGI_19841 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.2e-209 733.8 613 67.9
SHI16914 Sapria himalayana HOM05D003924 ORTHO05D005216 1.3e-190 671.4 536 66.6
Cre17.g729250 Chlamydomonas reinhardtii HOM05D003924 ORTHO05D005216 6.3e-169 599.4 999 39.0
HanXRQChr03g0077291 Helianthus annuus HOM05D003924 ORTHO05D005216 1.0e-166 592.0 478 69.5
Peaxi162Scf01024g00324 Petunia axillaris HOM05D003924 ORTHO05D005216 4.1e-152 543.5 442 70.6
Aqoxy298s003 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 9.2e-152 542.3 294 90.8
Rhsim03G0121600 Rhododendron simsii HOM05D003924 ORTHO05D005216 3.9e-150 537.0 408 70.6
HanXRQChr09g0240751 Helianthus annuus HOM05D003924 ORTHO05D005216 5.8e-122 443.4 374 69.0
MCO07G242 Micromonas commoda HOM05D003924 ORTHO05D005216 7.6e-122 443.0 1152 32.5
Oeu055052.1 Olea europaea HOM05D003924 ORTHO05D005216 3.8e-121 440.7 237 91.1
FAN12G0118 Fragaria x ananassa HOM05D003924 ORTHO05D005216 5.4e-120 436.8 365 75.1
Nitab4.5_0000061g0410 Nicotiana tabacum HOM05D003924 ORTHO05D005216 1.9e-112 411.8 344 67.4
C04p67110 Brassica napus HOM05D003924 ORTHO05D005216 2.1e-111 408.3 827 37.7
BolC4t28212H Brassica oleracea HOM05D003924 ORTHO05D005216 2.5e-96 358.2 558 43.9
PRCOL_00005861 Prasinoderma coloniale HOM05D003924 ORTHO05D005216 2.2e-92 345.1 1299 27.3
Psat4g181560 Pisum sativum HOM05D003924 ORTHO05D005216 3.3e-85 321.2 212 75.5
Oeu055056.1 Olea europaea HOM05D003924 ORTHO05D005216 4.8e-84 317.4 198 81.8
Psat0s6336g0040 Pisum sativum HOM05D003924 ORTHO05D005216 6.3e-84 317.0 181 84.0
Psat4g181480 Pisum sativum HOM05D003924 ORTHO05D005216 6.3e-84 317.0 181 84.0
HanXRQChr09g0265821 Helianthus annuus HOM05D003924 ORTHO05D005216 2.0e-82 312.0 171 90.1
SEGI_04277 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.6e-79 301.2 252 63.5
SEGI_05715 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 6.1e-79 300.4 252 63.5
Lsat_1_v5_gn_4_181660 Lactuca sativa HOM05D003924 ORTHO05D005216 4.8e-76 290.8 334 55.4
HPP92_017238 Vanilla planifolia HOM05D003924 ORTHO05D005216 4.4e-69 267.7 362 57.5
SHI16912 Sapria himalayana HOM05D003924 ORTHO05D005216 7.5e-69 266.9 386 54.7
BcaC02g07418 Brassica carinata HOM05D003924 ORTHO05D005216 3.8e-65 254.6 202 66.3
Os02g0631500 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.1e-64 253.1 337 51.6
SEGI_09139 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 2.5e-56 225.3 164 71.3
VMungo1309G0373 Vigna mungo HOM05D003924 ORTHO05D005216 5.5e-56 224.2 137 84.7
SEGI_20568 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 3.6e-55 221.5 131 87.0
SEGI_15949 Sequoiadendron giganteum HOM05D003924 ORTHO05D005216 1.2e-53 216.5 154 73.4
Lsat_1_v5_gn_6_42681 Lactuca sativa HOM05D003924 ORTHO05D005216 5.7e-53 214.2 317 51.1
BcaC02g07419 Brassica carinata HOM05D003924 ORTHO05D005216 3.3e-48 198.4 318 41.5
Aqoxy298s005 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 2.7e-42 178.7 169 56.8
Aqoxy298s002 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 8.0e-39 167.2 132 70.5
SHI16918 Sapria himalayana HOM05D003924 ORTHO05D005216 6.8e-38 164.1 119 65.5
Cpa.g.sc1.272 Carica papaya HOM05D003924 ORTHO05D005216 8.9e-38 163.7 253 46.6
Oeu055057.1 Olea europaea HOM05D001574 ORTHO05D000708 8.3e-36 157.1 121 76.0
Os02g0631601 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 2.7e-34 152.1 96 79.2
Cfa006566 Carpinus fangiana HOM05D003924 ORTHO05D043563 1.7e-33 149.4 222 44.6
AL4G36890 Arabidopsis lyrata HOM05D003924 ORTHO05D005216 2.5e-32 145.6 77 90.9
AUR62023872 Chenopodium quinoa HOM05D003924 ORTHO05D000112 5.6e-32 144.4 123 65.9
Psat7g256680 Pisum sativum HOM05D003924 ORTHO05D005216 1.4e-30 139.8 210 46.7
Atru.chr12.624 Acer truncatum HOM05D003924 ORTHO05D005216 1.5e-29 136.3 102 75.5
Os04g0523350 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 2.0e-29 136.0 101 66.3
Os04g0523200 Oryza sativa ssp. japonica HOM05D003924 ORTHO05D005216 1.7e-25 122.9 115 62.6
C04p28760 Brassica napus HOM05D003924 ORTHO05D020089 3.9e-25 121.7 87 69.0
Aqoxy298s004 Aquilegia oxysepala HOM05D003924 ORTHO05D005216 1.6e-23 116.3 73 75.3
Lsat_1_v5_gn_2_74800 Lactuca sativa HOM05D000572 ORTHO05D028562 1.5e-21 109.8 65 86.2
TPR.G40375 Trifolium pratense HOM05D003924 ORTHO05D005216 1.7e-20 106.3 78 71.8
MBI04_g36907_MAGBIO Magnolia biondii HOM05D003924 ORTHO05D005216 1.9e-19 102.8 97 68.0
Lsat_1_v5_gn_0_39640 Lactuca sativa HOM05D003924 ORTHO05D005911 2.1e-18 99.4 83 56.6
AL879U10010 Arabidopsis lyrata HOM05D003924 ORTHO05D000708 6.0e-18 97.8 59 84.7
C07p14600 Brassica napus HOM05D003924 ORTHO05D020089 1.9e-16 92.8 69 65.2
BcaC02g10454 Brassica carinata HOM05D003924 ORTHO05D020089 4.3e-16 91.7 57 75.4
BolC4t24411H Brassica oleracea HOM05D003924 ORTHO05D020089 9.6e-16 90.5 57 73.7
SHI16913 Sapria himalayana HOM05D000002 ORTHO05D000001 1.4e-14 86.7 77 57.1
Prupe.3G086600 Prunus persica HOM05D003924 ORTHO05D005216 4.4e-13 81.6 119 44.5
SHI16920 Sapria himalayana HOM05D003924 ORTHO05D002750 1.7e-12 79.7 46 84.8
BcaC02g07417 Brassica carinata HOM05D003924 ORTHO05D005216 5.4e-11 74.7 56 60.7
Atru.chr12.623 Acer truncatum HOM05D003924 ORTHO05D051863 3.3e-08 65.5 113 41.6
CAN.G464.25 Capsicum annuum HOM05D002267 ORTHO05D020089 5.6e-08 64.7 42 69.0
BraA07t28706Z Brassica rapa HOM05D003924 ORTHO05D020089 2.1e-07 62.8 47 55.3
C07p01420 Brassica napus HOM05D000209 ORTHO05D000129 6.2e-07 61.2 149 35.6


User provided reference genes

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