Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1959.5 970 100.0
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1711.8 982 87.9
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1636.3 984 84.2
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1629.0 992 83.0
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1560.4 986 79.5
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1540.4 989 79.3
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1540.0 987 79.3
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1536.2 981 79.6
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1523.8 985 78.4
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1518.8 982 77.8
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1511.5 973 78.1
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1508.8 983 77.5
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1507.3 985 77.5
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1500.7 939 79.9
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1499.6 988 76.3
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1498.4 992 75.8
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1497.3 938 79.5
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1494.9 991 75.8
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1494.9 990 75.9
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1492.2 986 76.0
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1492.2 987 76.1
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1490.7 994 76.8
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1490.7 990 75.7
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1489.9 1014 75.0
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1486.5 985 75.2
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1486.1 989 75.1
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1484.9 985 76.1
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1484.9 992 76.5
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1484.5 988 76.0
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1483.4 986 76.7
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1483.4 977 75.6
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1482.2 990 76.2
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1480.7 982 76.0
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1479.2 984 75.7
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1479.2 987 75.2
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1478.8 941 78.3
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1478.8 990 75.3
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1478.0 981 76.0
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1476.8 986 75.2
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1476.5 989 75.5
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1474.5 989 75.8
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1474.1 982 76.3
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1473.4 993 75.2
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1473.4 990 74.6
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1469.9 981 75.1
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1468.4 993 73.9
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1468.0 982 75.7
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1468.0 987 76.1
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1467.6 991 75.4
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1466.8 991 75.6
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1464.5 981 73.4
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1463.4 986 74.9
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1459.5 984 75.7
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1458.0 987 74.2
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1458.0 987 74.5
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1457.2 981 73.0
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1456.4 983 74.6
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1448.3 994 73.9
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1448.3 991 74.1
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1447.2 989 74.8
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1443.3 941 76.3
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1442.6 990 73.3
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1440.6 987 73.5
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1438.3 996 73.9
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1438.3 969 76.1
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1433.3 988 73.2
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1431.8 988 74.4
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1430.6 978 73.8
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1430.2 990 73.2
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1428.3 986 72.9
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1428.3 1003 72.1
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1425.6 944 74.0
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1424.8 990 73.0
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1414.4 1000 71.0
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1409.0 1009 71.6
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1408.7 996 71.9
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1408.3 993 72.2
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1405.2 1012 71.0
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1405.2 1012 71.0
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1402.5 997 70.9
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1401.7 985 71.7
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1401.3 950 73.8
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1400.6 1005 70.7
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1398.6 984 72.9
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1398.3 1002 70.4
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1392.1 984 72.6
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1391.7 968 71.0
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1388.6 989 71.4
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1388.2 985 70.8
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1387.5 986 71.4
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1386.7 1211 62.0
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1386.3 985 71.6
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1382.5 978 71.8
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1379.4 1006 69.8
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1375.5 1009 69.4
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1372.5 947 72.9
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1365.5 979 69.5
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1359.0 988 68.2
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1354.3 936 73.5
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1343.6 871 75.8
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1343.2 859 77.6
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1333.5 980 68.2
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1326.6 964 68.4
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1323.9 993 69.0
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1312.7 976 68.9
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1286.9 963 67.3
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1282.3 936 68.2
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1273.1 951 68.3
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1272.3 983 65.2
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1271.9 814 77.3
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1250.3 816 76.6
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1193.7 756 77.9
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1177.5 808 71.2
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1166.4 952 61.8
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1131.7 972 60.5
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1120.9 716 78.2
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1083.9 1017 55.9
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 3.3e-311 1071.6 1009 53.8
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 1.7e-310 1069.3 978 58.3
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 8.3e-305 1050.4 993 55.1
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 9.8e-298 1026.9 752 71.0
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 3.9e-278 961.8 684 71.2
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 3.2e-264 915.6 812 56.0
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 2.7e-263 912.5 703 68.0
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 4.6e-255 885.2 613 72.9
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.9e-240 836.6 590 71.9
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 1.5e-234 817.0 552 76.3
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 2.5e-224 783.1 630 66.8
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.7e-212 743.8 529 71.5
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 3.6e-199 699.5 442 78.7
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 7.0e-179 632.1 415 75.2
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 9.8e-173 611.7 404 75.5
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 6.2e-167 592.4 1060 36.0
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 2.2e-148 530.8 408 64.2
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 8.7e-145 518.8 416 62.3
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 1.7e-132 478.0 871 35.6
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 7.6e-125 452.6 401 61.6
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.3e-108 398.7 254 76.8
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 2.9e-108 397.5 223 85.7
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 3.3e-104 384.0 279 68.1
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 2.1e-98 364.8 1082 26.4
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 2.4e-94 351.3 253 67.2
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 2.4e-94 351.3 253 67.2
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 4.5e-93 347.1 848 30.4
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 6.8e-89 333.2 251 68.5
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 1.0e-84 319.3 246 67.9
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 3.2e-83 314.3 365 42.2
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 1.3e-55 222.6 148 72.3
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 1.9e-51 208.8 169 52.7
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 1.6e-50 205.7 149 63.8
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 1.6e-50 205.7 149 63.8
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 3.4e-48 198.0 246 50.4
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 2.9e-47 194.9 139 64.7
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 5.4e-46 190.7 118 75.4
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 7.6e-40 170.2 99 80.8
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 5.4e-38 164.1 142 52.1
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 9.3e-38 163.3 103 76.7
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 9.6e-35 153.3 171 48.0
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 2.4e-33 148.7 137 59.1
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.3e-31 142.9 76 85.5
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.8e-31 141.4 76 84.2
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.9e-31 141.0 75 86.7
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 8.4e-31 140.2 111 64.0
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.4e-30 138.7 76 82.9
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.5e-29 134.8 78 79.5
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.6e-29 134.4 74 83.8
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 6.0e-29 134.0 97 73.2
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 4.0e-25 121.3 65 84.6
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 5.3e-25 120.9 146 47.9
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 1.5e-24 119.4 117 57.3
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 5.8e-24 117.5 618 22.2
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 5.8e-24 117.5 119 52.1
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 3.8e-23 114.8 131 55.0
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 1.4e-22 112.8 78 71.8
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 3.3e-19 101.7 118 47.5
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.1e-17 96.7 114 44.7
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 2.2e-15 89.0 82 52.4
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 4.6e-13 81.3 56 67.9
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 1.8e-09 69.3 46 60.9
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 3.4e-08 65.1 129 33.3
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 3.4e-08 65.1 179 31.8
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 5.0e-07 61.2 42 61.9


User provided reference genes

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