Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra07G0059400 Salix brachista HOM05D002594 ORTHO05D003499 1.0e-134 483.4 239 100.0
Sabra18G0043400 Salix brachista HOM05D002594 ORTHO05D349089 2.4e-32 143.3 116 65.5
Aa31LG1G18300 Aethionema arabicum HOM05D002594 ORTHO05D003499 1.4e-11 74.3 133 38.3
Sabra06G0208100 Salix brachista HOM05D000653 ORTHO05D002177 6.9e-11 72.0 142 36.6
Haze_03325 Corylus avellana HOM05D002594 ORTHO05D003499 1.2e-10 71.2 109 46.8
Cpa.g.sc1346.2 Carica papaya HOM05D002594 ORTHO05D003499 4.5e-10 69.3 42 83.3
Manes.04G066600 Manihot esculenta HOM05D002594 ORTHO05D003499 5.9e-10 68.9 61 65.6
Sabra05G0078300 Salix brachista HOM05D002594 ORTHO05D003499 5.9e-10 68.9 61 63.9
Potri.005G094600 Populus trichocarpa HOM05D002594 ORTHO05D003499 7.7e-10 68.6 61 63.9
COL.COLO4_27671 Corchorus olitorius HOM05D002594 ORTHO05D003499 1.0e-09 68.2 35 94.3
Duzib248G1457 Durio zibethinus HOM05D002594 ORTHO05D003499 1.0e-09 68.2 42 81.0
Duzib251G0736 Durio zibethinus HOM05D002594 ORTHO05D003499 1.0e-09 68.2 42 81.0
Gohir.A03G110200 Gossypium hirsutum HOM05D002594 ORTHO05D003499 1.0e-09 68.2 42 81.0
Gohir.D02G134800 Gossypium hirsutum HOM05D002594 ORTHO05D003499 1.0e-09 68.2 42 81.0
Gorai.005G150700 Gossypium raimondii HOM05D002594 ORTHO05D003499 1.0e-09 68.2 42 81.0
Potri.007G070700 Populus trichocarpa HOM05D002594 ORTHO05D003499 1.0e-09 68.2 79 55.7
SalBow8G2582 Salvia bowleyana HOM05D002594 ORTHO05D003499 1.0e-09 68.2 42 81.0
unitig_37.g12045 Utricularia gibba HOM05D002594 ORTHO05D003499 1.0e-09 68.2 87 54.0
Aqoxy7G03613 Aquilegia oxysepala HOM05D002594 ORTHO05D003499 1.3e-09 67.8 35 91.4
unitig_92.g28193 Utricularia gibba HOM05D002594 ORTHO05D003499 1.3e-09 67.8 87 52.9
AT1G14650 Arabidopsis thaliana HOM05D002594 ORTHO05D003499 1.7e-09 67.4 42 78.6
ClCG11G007770 Citrullus lanatus HOM05D002594 ORTHO05D003499 1.7e-09 67.4 42 81.0
MELO3C008151.2 Cucumis melo HOM05D002594 ORTHO05D003499 1.7e-09 67.4 42 81.0
CsaV3_2G033800 Cucumis sativus L. HOM05D002594 ORTHO05D003499 1.7e-09 67.4 42 81.0
PGR044G2151 Punica granatum HOM05D002594 ORTHO05D003499 1.7e-09 67.4 42 81.0
QL09p022988 Quercus lobata HOM05D002594 ORTHO05D003499 1.7e-09 67.4 64 60.9
Thecc.02G311700 Theobroma cacao HOM05D002594 ORTHO05D003499 1.7e-09 67.4 90 48.9
ECA233G2844 Erigeron canadensis HOM05D002594 ORTHO05D003499 2.2e-09 67.0 61 60.7
Atru.chr4.1090 Acer truncatum HOM05D002594 ORTHO05D003499 2.9e-09 66.6 61 62.3
BcaNung05662 Brassica carinata HOM05D002594 ORTHO05D003499 2.9e-09 66.6 100 41.0
CARHR015140 Cardamine hirsuta HOM05D002594 ORTHO05D003499 2.9e-09 66.6 57 61.4
Nn7g37178 Nelumbo nucifera HOM05D002594 ORTHO05D003499 2.9e-09 66.6 35 88.6
EL10Ac2g04712 Beta vulgaris HOM05D002594 ORTHO05D003499 3.8e-09 66.2 72 54.2
AUR62012173 Chenopodium quinoa HOM05D002594 ORTHO05D003499 3.8e-09 66.2 72 54.2
AUR62012853 Chenopodium quinoa HOM05D002594 ORTHO05D003499 3.8e-09 66.2 72 54.2
AUR62022810 Chenopodium quinoa HOM05D002594 ORTHO05D003499 3.8e-09 66.2 72 54.2
Glyma.15G173200 Glycine max HOM05D002594 ORTHO05D003499 3.8e-09 66.2 52 69.2
Lsat_1_v5_gn_6_65541 Lactuca sativa HOM05D002594 ORTHO05D003499 3.8e-09 66.2 61 60.7
Sed0006467 Sechium edule HOM05D002594 ORTHO05D003499 3.8e-09 66.2 42 78.6
TWI74G1222 Tripterygium wilfordii HOM05D002594 ORTHO05D003499 3.8e-09 66.2 61 62.3
ATR0618G341 Amborella trichopoda HOM05D002594 ORTHO05D003499 5.0e-09 65.9 39 82.1
AL1G48800 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 5.0e-09 65.9 57 59.6
BcaNung05664 Brassica carinata HOM05D002594 ORTHO05D003499 5.0e-09 65.9 57 61.4
ClCG06G002870 Citrullus lanatus HOM05D002594 ORTHO05D003499 5.0e-09 65.9 42 81.0
MD13G1244100 Malus domestica HOM05D002594 ORTHO05D003499 5.0e-09 65.9 61 60.7
TAR371G1001 Trochodendron aralioides HOM05D002594 ORTHO05D003499 5.0e-09 65.9 90 48.9
Ah.13g068590 Amaranthus hybridus HOM05D002594 ORTHO05D003499 6.5e-09 65.5 72 54.2
Ah.15g095630 Amaranthus hybridus HOM05D002594 ORTHO05D003499 6.5e-09 65.5 62 58.1
BcaC05g25382 Brassica carinata HOM05D002594 ORTHO05D003499 6.5e-09 65.5 42 76.2
BolC5t30004H Brassica oleracea HOM05D002594 ORTHO05D003499 6.5e-09 65.5 42 76.2
Cfa010375 Carpinus fangiana HOM05D002594 ORTHO05D003499 6.5e-09 65.5 61 62.3
CiPaw.05G038700 Carya illinoinensis HOM05D002594 ORTHO05D003499 6.5e-09 65.5 61 60.7
Thhalv10006856m.g Eutrema salsugineum HOM05D002594 ORTHO05D003499 6.5e-09 65.5 78 51.3
MBI03_g24017_MAGBIO Magnolia biondii HOM05D002594 ORTHO05D003499 6.5e-09 65.5 67 56.7
Oeu025252.1 Olea europaea HOM05D002594 ORTHO05D003499 6.5e-09 65.5 34 91.2
Prupe.1G077400 Prunus persica HOM05D002594 ORTHO05D003499 6.5e-09 65.5 61 60.7
Ciclev10014300m.g Citrus clementina HOM05D002594 ORTHO05D003499 8.5e-09 65.1 60 61.7
Glyma.10G264400 Glycine max HOM05D002594 ORTHO05D003499 8.5e-09 65.1 71 56.3
Glyma.20G126000 Glycine max HOM05D002594 ORTHO05D003499 8.5e-09 65.1 71 56.3
Peaxi162Scf00036g01621 Petunia axillaris HOM05D002594 ORTHO05D003499 8.5e-09 65.1 38 78.9
Prupe.3G079300 Prunus persica HOM05D002594 ORTHO05D003499 8.5e-09 65.1 107 43.9
Hund24438 Selenicereus undatus HOM05D002594 ORTHO05D003499 8.5e-09 65.1 61 59.0
THA.LOC104801765 Tarenaya hassleriana HOM05D002594 ORTHO05D003499 8.5e-09 65.1 41 80.5
AL1G26610 Arabidopsis lyrata HOM05D002594 ORTHO05D003499 1.1e-08 64.7 42 73.8
BcaB03g13089 Brassica carinata HOM05D002594 ORTHO05D003499 1.1e-08 64.7 78 51.3
BcaC05g25380 Brassica carinata HOM05D002594 ORTHO05D003499 1.1e-08 64.7 57 59.6
CSS0003265 Camellia sinensis var. sinensis HOM05D002594 ORTHO05D003499 1.1e-08 64.7 41 78.0
CSS0036069 Camellia sinensis var. sinensis HOM05D002594 ORTHO05D003499 1.1e-08 64.7 41 78.0
Migut.B01299 Erythranthe guttata HOM05D002594 ORTHO05D003499 1.1e-08 64.7 42 76.2
Glyma.09G007700 Glycine max HOM05D002594 ORTHO05D003499 1.1e-08 64.7 61 60.7
Lj1A1151T81 Lonicera japonica HOM05D002594 ORTHO05D003499 1.1e-08 64.7 73 52.1
Phvul.007G037600 Phaseolus vulgaris HOM05D002594 ORTHO05D003499 1.1e-08 64.7 71 56.3
RcHm_v2.0_Chr7g0192451 Rosa chinensis HOM05D002594 ORTHO05D003499 1.1e-08 64.7 111 41.4
VMungo0720G1145 Vigna mungo HOM05D002594 ORTHO05D003499 1.1e-08 64.7 71 56.3
GSVIVG01012058001 Vitis vinifera HOM05D002594 ORTHO05D003499 1.1e-08 64.7 60 60.0
MSTRG.7588 Avicennia marina HOM05D002594 ORTHO05D003499 1.4e-08 64.3 60 60.0
Carub.0001s1441 Capsella rubella HOM05D002594 ORTHO05D003499 1.4e-08 64.3 42 76.2
CAN.G150.2 Capsicum annuum HOM05D002594 ORTHO05D003499 1.4e-08 64.3 34 88.2
FvH4_4g07440 Fragaria vesca HOM05D002594 ORTHO05D003499 1.4e-08 64.3 61 59.0
FAN07G2380 Fragaria x ananassa HOM05D002594 ORTHO05D003499 1.4e-08 64.3 61 59.0
FAN08G0321 Fragaria x ananassa HOM05D002594 ORTHO05D003499 1.4e-08 64.3 110 41.8
FAN12G4354 Fragaria x ananassa HOM05D002594 ORTHO05D003499 1.4e-08 64.3 61 59.0
FAN17G0285 Fragaria x ananassa HOM05D002594 ORTHO05D003499 1.4e-08 64.3 61 59.0
FAN22G1544 Fragaria x ananassa HOM05D002594 ORTHO05D003499 1.4e-08 64.3 61 59.0
Oeu046918.1 Olea europaea HOM05D002594 ORTHO05D003499 1.4e-08 64.3 62 61.3
RcHm_v2.0_Chr4g0399901 Rosa chinensis HOM05D002594 ORTHO05D003499 1.4e-08 64.3 61 59.0
SHI18003 Sapria himalayana HOM05D002594 ORTHO05D003499 1.4e-08 64.3 34 88.2
Solyc02g081960.3 Solanum lycopersicum HOM05D002594 ORTHO05D003499 1.4e-08 64.3 34 88.2
Solyc04g005690.4 Solanum lycopersicum HOM05D002594 ORTHO05D003499 1.4e-08 64.3 34 88.2
Sopen02g026590 Solanum pennellii HOM05D002594 ORTHO05D003499 1.4e-08 64.3 34 88.2
Sopen04g001740 Solanum pennellii HOM05D002594 ORTHO05D003499 1.4e-08 64.3 34 88.2
PGSC0003DMG400002827 Solanum tuberosum HOM05D002594 ORTHO05D003499 1.4e-08 64.3 34 88.2
PGSC0003DMG400007322 Solanum tuberosum HOM05D002594 ORTHO05D003499 1.4e-08 64.3 34 88.2
Aqoxy5G03555 Aquilegia oxysepala HOM05D002594 ORTHO05D003499 1.9e-08 63.9 121 43.0
CAN.G809.36 Capsicum annuum HOM05D002594 ORTHO05D003499 1.9e-08 63.9 92 45.7
Ca_23469_v3 Cicer arietinum L. HOM05D002594 ORTHO05D003499 1.9e-08 63.9 52 67.3
Lalb_Chr02g0145401 Lupinus albus HOM05D002594 ORTHO05D003499 1.9e-08 63.9 71 56.3
Nitab4.5_0000688g0290 Nicotiana tabacum HOM05D002594 ORTHO05D003499 1.9e-08 63.9 34 85.3
Nitab4.5_0002162g0020 Nicotiana tabacum HOM05D002594 ORTHO05D003499 1.9e-08 63.9 34 85.3
Nitab4.5_0002208g0020 Nicotiana tabacum HOM05D002594 ORTHO05D003499 1.9e-08 63.9 34 85.3
Peaxi162Scf00420g00339 Petunia axillaris HOM05D002594 ORTHO05D003499 1.9e-08 63.9 38 78.9
Prupe.3G162200 Prunus persica HOM05D002594 ORTHO05D003499 1.9e-08 63.9 42 73.8
SGA_v2.0_scaffold423G51465 Striga asiatica HOM05D002594 ORTHO05D003499 1.9e-08 63.9 61 60.7
vmacro07278 Vaccinium macrocarpon HOM05D002594 ORTHO05D003499 1.9e-08 63.9 60 60.0
BcaB02g06534 Brassica carinata HOM05D002594 ORTHO05D003499 2.5e-08 63.5 78 50.0
BraA08t35110Z Brassica rapa HOM05D002594 ORTHO05D003499 2.5e-08 63.5 78 50.0
ECA247G2788 Erigeron canadensis HOM05D002594 ORTHO05D003499 2.5e-08 63.5 61 57.4
Lalb_Chr02g0145441 Lupinus albus HOM05D002594 ORTHO05D003499 2.5e-08 63.5 71 56.3
Pp3c23_15260 Physcomitrium patens HOM05D002594 ORTHO05D003499 2.5e-08 63.5 35 82.9
Rhsim03G0093900 Rhododendron simsii HOM05D002594 ORTHO05D003499 2.5e-08 63.5 60 58.3
Sc21g0005370 Simmondsia chinensis HOM05D002594 ORTHO05D003499 2.5e-08 63.5 78 52.6
Actinidia05385 Actinidia chinensis HOM05D002594 ORTHO05D003499 3.2e-08 63.2 60 60.0
BcaC07g38750 Brassica carinata HOM05D002594 ORTHO05D003499 3.2e-08 63.2 78 50.0
C08p16810 Brassica napus HOM05D002594 ORTHO05D003499 3.2e-08 63.2 78 50.0
BolC8t49302H Brassica oleracea HOM05D002594 ORTHO05D003499 3.2e-08 63.2 78 50.0
Nitab4.5_0000646g0320 Nicotiana tabacum HOM05D002594 ORTHO05D003499 3.2e-08 63.2 87 48.3
TPR.G12859 Trifolium pratense HOM05D002594 ORTHO05D003499 3.2e-08 63.2 101 45.5
TPR.G26451 Trifolium pratense HOM05D002594 ORTHO05D003499 3.2e-08 63.2 71 56.3
Medtr8g106170 Medicago truncatula HOM05D002594 ORTHO05D003499 4.2e-08 62.8 71 54.9
Actinidia06681 Actinidia chinensis HOM05D002594 ORTHO05D003499 5.5e-08 62.4 60 58.3
Actinidia27174 Actinidia chinensis HOM05D002594 ORTHO05D003499 5.5e-08 62.4 60 58.3
A06p10690 Brassica napus HOM05D002594 ORTHO05D003499 5.5e-08 62.4 78 48.7
C05p12600 Brassica napus HOM05D002594 ORTHO05D003499 5.5e-08 62.4 78 48.7
BraA06t24251Z Brassica rapa HOM05D002594 ORTHO05D003499 5.5e-08 62.4 78 48.7
Cc00_g35870 Coffea canephora HOM05D002594 ORTHO05D003499 5.5e-08 62.4 34 85.3
Cc09_g04890 Coffea canephora HOM05D002594 ORTHO05D003499 5.5e-08 62.4 34 85.3
HPP92_018927 Vanilla planifolia HOM05D002594 ORTHO05D003499 5.5e-08 62.4 59 59.3
Eucgr.J00854 Eucalyptus grandis HOM05D002594 ORTHO05D003499 7.2e-08 62.0 41 78.0
HanXRQChr17g0538361 Helianthus annuus HOM05D002594 ORTHO05D003499 7.2e-08 62.0 60 58.3
RcHm_v2.0_Chr7g0191091 Rosa chinensis HOM05D002594 ORTHO05D003499 7.2e-08 62.0 72 51.4
Thhalv10016290m.g Eutrema salsugineum HOM05D002594 ORTHO05D003499 9.4e-08 61.6 41 75.6
Medtr7g063860 Medicago truncatula HOM05D002594 ORTHO05D003499 9.4e-08 61.6 60 60.0
RcHm_v2.0_Chr1g0364591 Rosa chinensis HOM05D002594 ORTHO05D003499 9.4e-08 61.6 111 40.5
Lj2g0011534 Lotus japonicus HOM05D002594 ORTHO05D003499 2.1e-07 60.5 34 82.4
Lj5g0011873 Lotus japonicus HOM05D002594 ORTHO05D003499 2.1e-07 60.5 34 82.4
Lj5g0018790 Lotus japonicus HOM05D002594 ORTHO05D003499 2.1e-07 60.5 34 82.4
SEGI_11496 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 2.1e-07 60.5 35 80.0
Carub.0001s1440 Capsella rubella HOM05D002594 ORTHO05D003499 2.7e-07 60.1 94 39.4
Lj3g0008201 Lotus japonicus HOM05D002594 ORTHO05D003499 2.7e-07 60.1 34 82.4
MD10G1329400 Malus domestica HOM05D002594 ORTHO05D003499 2.7e-07 60.1 35 80.0
Psat7g003760 Pisum sativum HOM05D002594 ORTHO05D003499 2.7e-07 60.1 71 53.5
Psat7g089360 Pisum sativum HOM05D002594 ORTHO05D003499 2.7e-07 60.1 71 53.5
SEGI_06729 Sequoiadendron giganteum HOM05D002594 ORTHO05D003499 4.6e-07 59.3 35 80.0
FAN04G1383 Fragaria x ananassa HOM05D002594 ORTHO05D003499 1.0e-06 58.2 61 55.7
FAN18G4310 Fragaria x ananassa HOM05D002594 ORTHO05D003499 1.0e-06 58.2 42 71.4
FAN13G0003 Fragaria x ananassa HOM05D002594 ORTHO05D003499 1.8e-06 57.4 61 54.1
Zm00001eb333220 Zea mays HOM05D002594 ORTHO05D003499 1.8e-06 57.4 49 61.2
Nitab4.5_0002805g0060 Nicotiana tabacum HOM05D002594 ORTHO05D003499 2.3e-06 57.0 87 46.0
Os02g0245000 Oryza sativa ssp. japonica HOM05D002594 ORTHO05D003499 5.1e-06 55.8 114 39.5


User provided reference genes

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