Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1879.4 962 100.0
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1778.8 964 95.3
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1684.5 965 89.5
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1645.2 965 86.7
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1634.0 969 86.3
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1628.6 967 86.6
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1623.6 992 83.0
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1620.1 964 86.5
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1603.2 963 84.8
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1591.6 965 84.6
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1590.1 970 83.2
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1587.4 919 85.5
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1586.6 917 85.3
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1577.4 964 84.1
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1577.0 968 82.7
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1574.3 994 82.0
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1573.5 967 83.9
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1570.8 968 81.6
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1570.1 966 84.1
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1569.3 967 83.1
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1566.6 968 82.9
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1565.8 968 82.3
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1565.4 968 82.6
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1564.7 971 82.0
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1564.3 972 82.4
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1563.9 970 82.3
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1562.4 966 81.2
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1562.4 968 82.3
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1561.2 968 82.4
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1560.4 965 82.4
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1559.7 967 82.5
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1558.9 969 81.8
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1558.5 968 82.9
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1555.4 921 83.7
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1554.3 972 83.1
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1552.0 967 82.8
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1550.4 968 81.6
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1549.3 964 82.3
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1546.2 973 82.7
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1545.8 962 81.9
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1545.4 965 82.6
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1545.4 970 81.6
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1543.5 968 81.4
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1542.7 962 81.7
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1540.8 965 81.1
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1538.9 971 80.6
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1538.9 964 81.7
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1537.7 968 81.5
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1537.7 969 80.6
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1537.3 922 82.3
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1536.2 966 81.0
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1530.8 970 81.0
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1526.1 970 80.7
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1525.8 965 82.2
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1523.8 975 79.5
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1523.1 978 79.1
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1523.1 966 79.3
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1522.7 985 79.0
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1518.1 963 80.9
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1517.7 976 80.8
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1517.3 966 79.0
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1514.2 974 80.4
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1514.2 973 80.3
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1513.4 968 79.9
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1513.4 973 79.1
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1512.7 970 79.4
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1511.9 966 80.6
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1506.5 970 79.8
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1502.3 972 79.8
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1500.7 968 79.3
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1496.9 959 80.0
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1494.2 925 79.0
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1489.2 965 78.4
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1485.3 972 78.7
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1483.8 989 76.9
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1483.0 979 76.7
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1481.5 976 77.6
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1479.5 932 80.2
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1477.2 990 76.6
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1477.2 1184 67.6
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1475.7 964 79.1
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1473.0 928 76.9
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1472.6 976 77.2
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1471.4 964 79.0
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1471.1 992 76.7
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1471.1 992 76.7
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1469.1 966 77.2
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1466.1 973 77.6
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1464.1 981 76.2
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1459.5 961 77.9
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1456.0 985 76.0
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1451.4 929 78.1
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1448.7 964 75.8
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1448.7 988 75.5
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1447.6 964 77.8
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1432.2 919 79.9
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1429.5 838 83.4
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1423.7 970 76.1
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1408.3 972 75.5
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1407.9 963 73.3
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1404.8 851 81.0
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1399.8 973 71.1
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1386.3 960 73.3
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1378.2 925 73.9
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1378.2 956 71.5
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1365.9 927 73.9
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1347.4 940 73.2
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1344.7 914 72.5
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1327.0 794 84.4
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1323.5 963 70.0
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1298.9 796 81.2
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1247.3 736 83.4
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1234.9 931 65.7
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1204.1 795 74.2
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1179.1 950 64.2
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1174.1 696 84.3
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 0.0e+00 1134.4 1001 60.5
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 0.0e+00 1120.1 960 62.3
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 0.0e+00 1116.3 991 58.2
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 0.0e+00 1100.1 969 59.3
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 0.0e+00 1077.4 734 77.9
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 5.9e-295 1017.7 671 77.6
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 6.6e-278 961.1 683 74.8
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 4.9e-273 944.9 793 59.4
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 5.4e-272 941.4 601 80.0
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 3.9e-254 882.1 562 77.9
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 8.4e-249 864.4 521 82.7
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 9.6e-237 824.3 599 72.1
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 3.0e-222 776.2 498 77.3
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 1.0e-209 734.6 451 86.0
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 7.4e-189 665.2 386 83.9
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.2e-185 653.7 404 85.1
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 1.0e-174 618.2 1046 37.8
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 4.7e-151 539.7 407 64.6
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 3.2e-147 526.9 445 61.8
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 3.0e-137 493.8 832 37.6
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 6.0e-130 469.5 480 56.0
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 2.4e-118 431.0 254 82.7
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 9.0e-118 429.1 223 91.5
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 1.9e-107 394.8 279 70.3
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 1.6e-103 381.7 1062 27.8
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 6.7e-97 359.8 861 31.0
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 2.8e-95 354.4 253 68.8
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 2.8e-95 354.4 253 68.8
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 1.2e-93 349.0 249 69.5
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 6.9e-86 323.2 286 61.5
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 6.9e-86 323.2 374 45.2
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 5.5e-59 233.8 148 74.3
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 5.0e-52 210.7 169 53.8
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 1.6e-50 205.7 149 64.4
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 1.6e-50 205.7 149 64.4
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 1.3e-47 196.1 242 50.8
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 1.3e-47 196.1 139 66.2
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.3e-44 186.0 118 73.7
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 2.5e-43 181.8 103 85.4
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 2.0e-40 172.2 99 82.8
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 4.4e-40 171.0 174 51.7
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 9.8e-40 169.9 142 56.3
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 1.1e-35 156.4 137 61.3
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.3e-35 154.5 76 92.1
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 7.3e-35 153.7 111 69.4
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.2e-34 152.9 76 90.8
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.6e-34 152.5 75 93.3
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 8.0e-34 150.2 76 89.5
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 5.2e-33 147.5 88 81.8
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.2e-32 146.4 78 85.9
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.5e-32 146.0 74 90.5
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 9.8e-32 143.3 99 73.7
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 2.5e-27 128.6 144 47.9
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 5.6e-27 127.5 78 80.8
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 9.5e-27 126.7 121 53.7
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 2.0e-24 119.0 82 76.8
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 2.6e-24 118.6 120 50.0
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 2.2e-23 115.5 109 52.3
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.9e-23 115.2 74 77.0
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 2.4e-17 95.5 302 26.5
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 3.4e-16 91.7 82 57.3
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 4.2e-14 84.7 56 71.4
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 1.8e-09 69.3 46 60.9
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 9.0e-09 67.0 187 31.6
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 3.4e-08 65.1 133 35.3
HanXRQChr15g0465621 Helianthus annuus HOM05D003791 ORTHO05D019539 6.4e-07 60.8 78 43.6
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 8.4e-07 60.5 42 64.3


User provided reference genes

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