Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO351G0040 Selaginella moellendorffii HOM05D004465 ORTHO05D005450 5.4e-145 517.7 272 100.0
Mapoly0036s0012 Marchantia polymorpha HOM05D004465 ORTHO05D005450 1.0e-90 337.4 283 60.8
Pp3c3_30640 Physcomitrium patens HOM05D004465 ORTHO05D005450 1.7e-82 310.1 273 58.2
MBI19_g15845_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 3.6e-72 275.8 284 47.5
SEGI_29460 Sequoiadendron giganteum HOM05D004465 ORTHO05D005450 6.1e-72 275.0 284 49.3
Lj1g0001578 Lotus japonicus HOM05D004465 ORTHO05D005450 5.2e-71 271.9 286 46.9
ATR0626G226 Amborella trichopoda HOM05D004465 ORTHO05D005450 1.2e-70 270.8 286 48.3
Ca_09695_v3 Cicer arietinum L. HOM05D004465 ORTHO05D005450 1.2e-70 270.8 286 47.2
MELO3C008880.2 Cucumis melo HOM05D004465 ORTHO05D005450 2.0e-70 270.0 270 47.4
Medtr4g121550 Medicago truncatula HOM05D004465 ORTHO05D005450 2.0e-70 270.0 284 46.8
Psat4g023240 Pisum sativum HOM05D004465 ORTHO05D005450 2.0e-70 270.0 279 47.7
Hund26620 Selenicereus undatus HOM05D004465 ORTHO05D005450 2.2e-69 266.5 286 46.2
ClCG04G004880 Citrullus lanatus HOM05D004465 ORTHO05D005450 3.7e-69 265.8 275 47.3
MELO3C026181.2 Cucumis melo HOM05D004465 ORTHO05D005450 6.3e-69 265.0 286 45.1
CsaV3_4G031760 Cucumis sativus L. HOM05D004465 ORTHO05D005450 6.3e-69 265.0 275 47.3
TAR633G0251 Trochodendron aralioides HOM05D004465 ORTHO05D005450 6.3e-69 265.0 287 44.9
Zm00001eb067490 Zea mays HOM05D004465 ORTHO05D005450 8.3e-69 264.6 271 49.1
Aqoxy2G03197 Aquilegia oxysepala HOM05D004465 ORTHO05D005450 1.4e-68 263.8 287 45.3
Sc14g0002440 Simmondsia chinensis HOM05D004465 ORTHO05D005450 1.8e-68 263.5 268 48.1
Sed0001639 Sechium edule HOM05D004465 ORTHO05D005450 2.4e-68 263.1 269 46.8
BraA10t42464Z Brassica rapa HOM05D004465 ORTHO05D005450 3.1e-68 262.7 280 47.5
Eucgr.H01542 Eucalyptus grandis HOM05D004465 ORTHO05D005450 3.1e-68 262.7 286 45.8
PSO302G0160 Papaver somniferum HOM05D004465 ORTHO05D005450 3.1e-68 262.7 286 44.4
Sp1g02360 Schrenkiella parvula HOM05D004465 ORTHO05D005450 3.1e-68 262.7 277 46.6
CANSAT25G0403 Cannabis sativa HOM05D004465 ORTHO05D005450 5.4e-68 261.9 283 45.2
Os04g0520000 Oryza sativa ssp. japonica HOM05D004465 ORTHO05D005450 5.4e-68 261.9 271 49.8
CDE05G1996 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 7.0e-68 261.5 287 47.4
PSO170G6090 Papaver somniferum HOM05D004465 ORTHO05D005450 1.2e-67 260.8 286 44.4
Psat4g225440 Pisum sativum HOM05D004465 ORTHO05D005450 1.2e-67 260.8 272 46.7
A10p01910 Brassica napus HOM05D004465 ORTHO05D005450 1.6e-67 260.4 280 47.5
Psat3g002760 Pisum sativum HOM05D004465 ORTHO05D005450 2.0e-67 260.0 286 44.8
AT1G03360 Arabidopsis thaliana HOM05D004465 ORTHO05D005450 2.7e-67 259.6 279 47.3
Nn1g08362 Nelumbo nucifera HOM05D004465 ORTHO05D005450 3.5e-67 259.2 286 45.8
CSS0023645 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 4.5e-67 258.8 276 45.7
arahy.Tifrunner.gnm1.ann1.CV9AIL Arachis hypogaea HOM05D004465 ORTHO05D005450 5.9e-67 258.5 279 44.8
CSS0050172 Camellia sinensis var. sinensis HOM05D004465 ORTHO05D005450 5.9e-67 258.5 276 45.7
Cre12.g496450 Chlamydomonas reinhardtii HOM05D004465 ORTHO05D005450 5.9e-67 258.5 280 51.4
BcaC05g24540 Brassica carinata HOM05D004465 ORTHO05D005450 1.0e-66 257.7 280 46.8
Cfa006082 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.0e-66 257.7 275 46.5
CiPaw.08G102200 Carya illinoinensis HOM05D004465 ORTHO05D005450 1.0e-66 257.7 275 46.2
Manes.17G011600 Manihot esculenta HOM05D004465 ORTHO05D005450 1.0e-66 257.7 279 47.3
BolC5t28966H Brassica oleracea HOM05D004465 ORTHO05D005450 1.7e-66 256.9 280 46.1
AUR62025039 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.7e-66 256.9 281 46.3
HanXRQChr15g0466601 Helianthus annuus HOM05D004465 ORTHO05D005450 1.7e-66 256.9 288 44.1
AL1G12880 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 2.3e-66 256.5 279 46.6
CARHR002730 Cardamine hirsuta HOM05D004465 ORTHO05D005450 2.3e-66 256.5 281 47.3
Thecc.01G117300 Theobroma cacao HOM05D004465 ORTHO05D005450 2.9e-66 256.1 277 45.8
vmacro02540 Vaccinium macrocarpon HOM05D004465 ORTHO05D005450 3.8e-66 255.8 277 46.9
Carub.0001s0248 Capsella rubella HOM05D004465 ORTHO05D005450 5.0e-66 255.4 281 46.6
GSVIVG01011064001 Vitis vinifera HOM05D004465 ORTHO05D005450 5.0e-66 255.4 267 46.1
arahy.Tifrunner.gnm1.ann1.N9UI87 Arachis hypogaea HOM05D004465 ORTHO05D005450 6.6e-66 255.0 279 44.1
Phvul.001G147600 Phaseolus vulgaris HOM05D004465 ORTHO05D005450 6.6e-66 255.0 284 44.4
Actinidia24311 Actinidia chinensis HOM05D004465 ORTHO05D005450 8.6e-66 254.6 276 46.0
Thhalv10008200m.g Eutrema salsugineum HOM05D004465 ORTHO05D005450 1.1e-65 254.2 281 46.3
VMungo1383G2558 Vigna mungo HOM05D004465 ORTHO05D005450 1.1e-65 254.2 284 44.4
Cpa.g.sc9.125 Carica papaya HOM05D004465 ORTHO05D005450 1.5e-65 253.8 287 46.3
MSTRG.21585 Avicennia marina HOM05D004465 ORTHO05D005450 1.9e-65 253.4 284 45.4
COL.COLO4_22372 Corchorus olitorius HOM05D004465 ORTHO05D005450 2.5e-65 253.1 279 44.4
Migut.D00252 Erythranthe guttata HOM05D004465 ORTHO05D005450 2.5e-65 253.1 277 46.2
Gohir.D11G226800 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.5e-65 253.1 268 48.9
Lsat_1_v5_gn_2_2880 Lactuca sativa HOM05D004465 ORTHO05D005450 2.5e-65 253.1 281 44.8
Lju41A26G23 Lonicera japonica HOM05D004465 ORTHO05D005450 2.5e-65 253.1 287 44.3
Glyma.19G152700 Glycine max HOM05D004465 ORTHO05D005450 3.3e-65 252.7 286 43.7
FAN27G1503 Fragaria x ananassa HOM05D004465 ORTHO05D005450 4.3e-65 252.3 261 47.5
Sopen09g028910 Solanum pennellii HOM05D004465 ORTHO05D005450 4.3e-65 252.3 285 44.6
PGSC0003DMG400003807 Solanum tuberosum HOM05D004465 ORTHO05D005450 4.3e-65 252.3 285 44.9
Gorai.002G150000 Gossypium raimondii HOM05D004465 ORTHO05D005450 5.6e-65 251.9 268 48.5
Lalb_Chr21g0313041 Lupinus albus HOM05D004465 ORTHO05D005450 5.6e-65 251.9 286 44.1
Solyc09g074090.3 Solanum lycopersicum HOM05D004465 ORTHO05D005450 5.6e-65 251.9 285 44.6
RcHm_v2.0_Chr6g0291951 Rosa chinensis HOM05D004465 ORTHO05D005450 7.3e-65 251.5 261 47.5
THA.LOC104815950 Tarenaya hassleriana HOM05D004465 ORTHO05D005450 7.3e-65 251.5 273 44.7
TWI14G0547 Tripterygium wilfordii HOM05D004465 ORTHO05D005450 7.3e-65 251.5 291 44.7
Lalb_Chr12g0205491 Lupinus albus HOM05D004465 ORTHO05D005450 1.2e-64 250.8 286 43.7
Aa31LG3G11130 Aethionema arabicum HOM05D004465 ORTHO05D005450 1.6e-64 250.4 281 45.2
FAN15G3052 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.6e-64 250.4 261 47.1
PGR119G1155 Punica granatum HOM05D004465 ORTHO05D005450 1.6e-64 250.4 286 43.7
Atru.chr5.1333 Acer truncatum HOM05D004465 ORTHO05D005450 2.1e-64 250.0 276 47.1
Cc04_g13300 Coffea canephora HOM05D004465 ORTHO05D005450 2.1e-64 250.0 286 42.3
unitig_0.g1195 Utricularia gibba HOM05D004465 ORTHO05D005450 2.8e-64 249.6 273 46.2
Prupe.8G247600 Prunus persica HOM05D004465 ORTHO05D005450 3.6e-64 249.2 284 44.7
FAN20G2589 Fragaria x ananassa HOM05D004465 ORTHO05D005450 4.7e-64 248.8 261 46.7
Ciclev10021133m.g Citrus clementina HOM05D004465 ORTHO05D005450 6.1e-64 248.4 276 46.0
MD11G1292000 Malus domestica HOM05D004465 ORTHO05D005450 6.1e-64 248.4 273 45.8
Potri.003G194400 Populus trichocarpa HOM05D004465 ORTHO05D005450 6.1e-64 248.4 278 44.6
FvH4_2g24140 Fragaria vesca HOM05D004465 ORTHO05D005450 8.0e-64 248.1 261 47.1
Hma1.2p1_0628F.1_g191790 Hydrangea macrophylla HOM05D004465 ORTHO05D005450 8.0e-64 248.1 305 42.6
Sabra03G0145100 Salix brachista HOM05D004465 ORTHO05D005450 8.0e-64 248.1 278 45.3
ECA247G0279 Erigeron canadensis HOM05D004465 ORTHO05D005450 1.0e-63 247.7 239 49.4
FAN24G2543 Fragaria x ananassa HOM05D004465 ORTHO05D005450 1.0e-63 247.7 261 46.7
Gohir.A10G082900 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.0e-63 247.7 279 44.1
Gohir.D10G105100 Gossypium hirsutum HOM05D004465 ORTHO05D005450 1.0e-63 247.7 279 44.4
Dinv32970 Davidia involucrata HOM05D004465 ORTHO05D005450 1.4e-63 247.3 255 47.5
Gohir.A11G223700 Gossypium hirsutum HOM05D004465 ORTHO05D005450 2.3e-63 246.5 268 47.4
Duzib147G0102 Durio zibethinus HOM05D004465 ORTHO05D005450 3.0e-63 246.1 276 46.0
Peaxi162Scf00941g00114 Petunia axillaris HOM05D004465 ORTHO05D005450 1.2e-62 244.2 285 44.6
Nitab4.5_0001323g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 2.6e-62 243.0 285 43.9
Aa31LG1G9210 Aethionema arabicum HOM05D004465 ORTHO05D005450 4.4e-62 242.3 291 43.6
CAN.G956.9 Capsicum annuum HOM05D004465 ORTHO05D005450 5.7e-62 241.9 285 43.9
Nitab4.5_0002927g0060 Nicotiana tabacum HOM05D004465 ORTHO05D005450 5.7e-62 241.9 285 43.5
Haze_04767 Corylus avellana HOM05D004465 ORTHO05D005450 1.3e-61 240.7 302 42.4
Lsat_1_v5_gn_9_1881 Lactuca sativa HOM05D004465 ORTHO05D005450 8.3e-61 238.0 281 43.4
Rhsim13G0021500 Rhododendron simsii HOM05D004465 ORTHO05D005450 3.2e-60 236.1 258 45.3
Oeu006227.1 Olea europaea HOM05D004465 ORTHO05D005450 7.0e-60 235.0 319 40.1
SalBow3G2805 Salvia bowleyana HOM05D004465 ORTHO05D005450 7.0e-60 235.0 317 39.7
Oeu047890.1 Olea europaea HOM05D004465 ORTHO05D005450 1.3e-58 230.7 184 57.1
Gorai.011G114800 Gossypium raimondii HOM05D004465 ORTHO05D005450 3.0e-58 229.6 262 44.3
HPP92_017959 Vanilla planifolia HOM05D004465 ORTHO05D005450 5.6e-57 225.3 265 45.7
TPR.G11548 Trifolium pratense HOM05D004465 ORTHO05D005450 1.2e-56 224.2 284 42.3
QL02p002453 Quercus lobata HOM05D004465 ORTHO05D005450 1.6e-56 223.8 338 37.6
Duzib264G0721 Durio zibethinus HOM05D004465 ORTHO05D005450 8.3e-53 211.5 268 42.2
Ah.01g002340 Amaranthus hybridus HOM05D004465 ORTHO05D005450 5.4e-52 208.8 286 40.9
Carub.0002s0706 Capsella rubella HOM05D004465 ORTHO05D005450 2.0e-51 206.8 258 40.7
MCO01G628 Micromonas commoda HOM05D004465 ORTHO05D005450 1.9e-49 200.3 263 43.0
Medtr2g093790 Medicago truncatula HOM05D004465 ORTHO05D005450 2.1e-48 196.8 228 42.5
BcaC05g24533 Brassica carinata HOM05D001540 ORTHO05D001520 3.6e-48 196.1 272 39.3
AL1G67150 Arabidopsis lyrata HOM05D004465 ORTHO05D005450 6.8e-47 191.8 258 39.5
Lj1A45T35 Lonicera japonica HOM05D004465 ORTHO05D005450 9.8e-46 188.0 273 39.2
EL10Ac9g22404 Beta vulgaris HOM05D004465 ORTHO05D005450 1.7e-45 187.2 286 38.5
Haze_26173 Corylus avellana HOM05D004465 ORTHO05D005450 3.7e-45 186.0 258 42.6
MD03G1271400 Malus domestica HOM05D004465 ORTHO05D005450 3.7e-45 186.0 143 60.8
Cfa025641 Carpinus fangiana HOM05D004465 ORTHO05D005450 1.5e-41 174.1 272 39.7
BcaC05g24537 Brassica carinata HOM05D004465 ORTHO05D005450 1.2e-40 171.0 285 37.2
Psat5g228640 Pisum sativum HOM05D004465 ORTHO05D005450 2.1e-40 170.2 137 59.1
Actinidia00724 Actinidia chinensis HOM05D004465 ORTHO05D005450 4.1e-36 156.0 272 34.6
CBR_g31328 Chara braunii HOM05D004465 ORTHO05D000048 7.1e-36 155.2 195 47.7
CBR_g31324 Chara braunii HOM05D004465 ORTHO05D000002 3.9e-34 149.4 96 72.9
CDE07G1085 Ceratophyllum demersum HOM05D004465 ORTHO05D005450 1.8e-31 140.6 189 42.3
PRCOL_00003283 Prasinoderma coloniale HOM05D004465 ORTHO05D005450 6.9e-31 138.7 271 35.8
TPR.G23233 Trifolium pratense HOM05D004465 ORTHO05D005450 1.2e-30 137.9 98 63.3
AUR62006496 Chenopodium quinoa HOM05D004465 ORTHO05D005450 1.3e-29 134.4 185 39.5
SHI31135 Sapria himalayana HOM05D000023 ORTHO05D000014 1.1e-28 131.3 256 34.8
SGA_v2.0_scaffold1G00438 Striga asiatica HOM05D004465 ORTHO05D005450 1.1e-28 131.3 186 37.1
SHI31141 Sapria himalayana HOM05D004465 ORTHO05D000001 3.2e-28 129.8 104 52.9
AUR62006497 Chenopodium quinoa HOM05D004465 ORTHO05D005450 9.3e-28 128.3 98 60.2
CANSAT25G2682 Cannabis sativa HOM05D004465 ORTHO05D005450 1.6e-27 127.5 100 56.0
CsaV3_1G000270 Cucumis sativus L. HOM05D004465 ORTHO05D005450 3.5e-27 126.3 141 44.0
CARHR054000 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.7e-26 124.0 113 50.4
CARHR054740 Cardamine hirsuta HOM05D004465 ORTHO05D005450 1.7e-26 124.0 272 30.9
ClCG06G018160 Citrullus lanatus HOM05D004465 ORTHO05D005450 1.4e-23 114.4 184 34.8
C05p01850 Brassica napus HOM05D004465 ORTHO05D005450 3.1e-23 113.2 184 34.2
Cc00_g20190 Coffea canephora HOM05D004465 ORTHO05D005450 1.7e-21 107.5 157 36.3
Lsat_1_v5_gn_2_2860 Lactuca sativa HOM05D004465 ORTHO05D005450 2.9e-21 106.7 92 52.2
Prupe.8G248900 Prunus persica HOM05D004465 ORTHO05D005450 1.4e-20 104.4 176 33.5
Glyma.17G181200 Glycine max HOM05D004465 ORTHO05D005450 1.9e-20 104.0 82 54.9
Glyma.03G149702 Glycine max HOM05D004465 ORTHO05D005450 4.8e-16 89.4 75 49.3
CARHR120580 Cardamine hirsuta HOM05D004465 ORTHO05D005450 6.2e-16 89.0 122 38.5
Zm00001eb148160 Zea mays HOM05D004465 ORTHO05D005450 1.3e-13 81.3 120 35.0
QL11p055012 Quercus lobata HOM05D004465 ORTHO05D005450 1.7e-13 80.9 116 36.2
TPR.G16860 Trifolium pratense HOM05D004465 ORTHO05D005450 3.8e-13 79.7 55 63.6
Nitab4.5_0006227g0010 Nicotiana tabacum HOM05D004465 ORTHO05D005450 6.4e-13 79.0 154 29.9
MBI19_g08244_MAGBIO Magnolia biondii HOM05D004465 ORTHO05D005450 1.4e-12 77.8 83 41.0
CARHR054010 Cardamine hirsuta HOM05D004465 ORTHO05D005450 5.5e-12 75.9 129 32.6
DCAR_018396 Daucus carota HOM05D004465 ORTHO05D005450 1.8e-10 70.9 114 31.6


User provided reference genes

Program Settings