Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO223G0013 Selaginella moellendorffii HOM05D006414 ORTHO05D007780 1.1e-150 537.3 450 100.0
SalBow6G2882 Salvia bowleyana HOM05D006414 ORTHO05D007780 2.9e-26 124.0 186 37.6
SalBow6G7209 Salvia bowleyana HOM05D006414 ORTHO05D007780 2.9e-26 124.0 186 37.6
Gohir.D10G102200 Gossypium hirsutum HOM05D006414 ORTHO05D007780 2.4e-25 120.9 180 36.7
SalBow8G2565 Salvia bowleyana HOM05D000608 ORTHO05D007780 7.1e-25 119.4 185 36.2
SalBow8G0663 Salvia bowleyana HOM05D000608 ORTHO05D007780 9.3e-25 119.0 185 36.2
ClCG01G019140 Citrullus lanatus HOM05D006414 ORTHO05D007780 3.0e-23 114.0 168 36.9
Sed0012904 Sechium edule HOM05D006414 ORTHO05D007780 3.0e-23 114.0 168 36.9
CSS0011059 Camellia sinensis var. sinensis HOM05D006414 ORTHO05D007780 3.9e-23 113.6 168 36.3
CSS0026013 Camellia sinensis var. sinensis HOM05D006414 ORTHO05D007780 3.9e-23 113.6 168 36.3
Dinv19510 Davidia involucrata HOM05D006414 ORTHO05D007780 5.1e-23 113.2 168 36.3
Eucgr.I00342 Eucalyptus grandis HOM05D006414 ORTHO05D007780 5.1e-23 113.2 150 40.0
Eucgr.L02634 Eucalyptus grandis HOM05D006414 ORTHO05D007780 5.1e-23 113.2 150 40.0
Aa31LG6G15650 Aethionema arabicum HOM05D006414 ORTHO05D007780 6.7e-23 112.8 168 35.7
Oeu028531.1 Olea europaea HOM05D006414 ORTHO05D007780 6.7e-23 112.8 168 36.9
SalBow6G5148 Salvia bowleyana HOM05D006414 ORTHO05D007780 6.7e-23 112.8 181 35.9
HPP92_016845 Vanilla planifolia HOM05D006414 ORTHO05D007780 6.7e-23 112.8 169 34.9
PSO215G0001 Papaver somniferum HOM05D006414 ORTHO05D007780 8.7e-23 112.5 152 42.1
Sc03g0004230 Simmondsia chinensis HOM05D006414 ORTHO05D007780 8.7e-23 112.5 165 38.2
THA.LOC104807720 Tarenaya hassleriana HOM05D006414 ORTHO05D007780 8.7e-23 112.5 168 35.7
Cc07_g15860 Coffea canephora HOM05D006414 ORTHO05D007780 1.1e-22 112.1 165 35.8
CsaV3_6G045830 Cucumis sativus L. HOM05D006414 ORTHO05D007780 1.1e-22 112.1 168 36.9
Lj2A560T64 Lonicera japonica HOM05D006414 ORTHO05D007780 1.1e-22 112.1 168 35.7
MD03G1187700 Malus domestica HOM05D006414 ORTHO05D007780 1.1e-22 112.1 173 35.8
Prupe.4G236100 Prunus persica HOM05D006414 ORTHO05D007780 1.9e-22 111.3 173 35.8
vmacro18623 Vaccinium macrocarpon HOM05D006414 ORTHO05D007780 1.9e-22 111.3 159 37.1
MELO3C007791.2 Cucumis melo HOM05D006414 ORTHO05D007780 2.5e-22 110.9 168 36.9
Solyc04g054270.4 Solanum lycopersicum HOM05D006414 ORTHO05D007780 2.5e-22 110.9 168 34.5
Aqoxy6G00504 Aquilegia oxysepala HOM05D006414 ORTHO05D007780 3.3e-22 110.5 168 36.3
Sopen04g023860 Solanum pennellii HOM05D006414 ORTHO05D007780 3.3e-22 110.5 168 34.5
PGSC0003DMG400012802 Solanum tuberosum HOM05D006414 ORTHO05D007780 3.3e-22 110.5 168 34.5
TWI74G0679 Tripterygium wilfordii HOM05D006414 ORTHO05D007780 3.3e-22 110.5 168 36.3
unitig_28.g29440 Utricularia gibba HOM05D006414 ORTHO05D007780 3.3e-22 110.5 168 36.3
Carub.0007s0149 Capsella rubella HOM05D006414 ORTHO05D007780 4.3e-22 110.2 168 34.5
Ciclev10025440m.g Citrus clementina HOM05D006414 ORTHO05D007780 4.3e-22 110.2 150 40.0
Atru.chr4.307 Acer truncatum HOM05D006414 ORTHO05D007780 5.6e-22 109.8 150 38.7
BcaNung06694 Brassica carinata HOM05D006414 ORTHO05D007780 5.6e-22 109.8 168 34.5
AL7G11770 Arabidopsis lyrata HOM05D006414 ORTHO05D007780 7.4e-22 109.4 168 35.1
Actinidia16042 Actinidia chinensis HOM05D006414 ORTHO05D007780 9.6e-22 109.0 165 35.8
Nitab4.5_0000156g0020 Nicotiana tabacum HOM05D006414 ORTHO05D007780 9.6e-22 109.0 168 34.5
Zm00001eb194340 Zea mays HOM05D006414 ORTHO05D007780 9.6e-22 109.0 168 35.7
BcaNung00882 Brassica carinata HOM05D006414 ORTHO05D007780 1.3e-21 108.6 168 33.9
A01p00510 Brassica napus HOM05D006414 ORTHO05D007780 1.3e-21 108.6 168 33.9
C01p00660 Brassica napus HOM05D006414 ORTHO05D007780 1.3e-21 108.6 168 33.9
DCAR_000987 Daucus carota HOM05D006414 ORTHO05D007780 1.3e-21 108.6 168 34.5
Migut.H02413 Erythranthe guttata HOM05D006414 ORTHO05D007780 1.3e-21 108.6 168 35.1
Thhalv10024997m.g Eutrema salsugineum HOM05D006414 ORTHO05D007780 1.3e-21 108.6 168 34.5
Peaxi162Scf01651g00012 Petunia axillaris HOM05D006414 ORTHO05D007780 1.3e-21 108.6 168 34.5
RcHm_v2.0_Chr4g0409671 Rosa chinensis HOM05D006414 ORTHO05D007780 1.3e-21 108.6 150 36.7
ECA238G3570 Erigeron canadensis HOM05D006414 ORTHO05D007780 1.6e-21 108.2 150 38.0
arahy.Tifrunner.gnm1.ann1.F90T56 Arachis hypogaea HOM05D006414 ORTHO05D007780 2.1e-21 107.8 150 36.0
CAN.G382.6 Capsicum annuum HOM05D006414 ORTHO05D007780 2.1e-21 107.8 197 31.5
AUR62003321 Chenopodium quinoa HOM05D006414 ORTHO05D007780 2.1e-21 107.8 168 35.1
AUR62016261 Chenopodium quinoa HOM05D006414 ORTHO05D007780 2.1e-21 107.8 168 35.1
AUR62043752 Chenopodium quinoa HOM05D006414 ORTHO05D007780 2.1e-21 107.8 168 35.1
Ah.03g149270 Amaranthus hybridus HOM05D006414 ORTHO05D007780 2.8e-21 107.5 168 35.7
arahy.Tifrunner.gnm1.ann1.N3YXA0 Arachis hypogaea HOM05D006414 ORTHO05D007780 2.8e-21 107.5 150 36.0
MSTRG.2541 Avicennia marina HOM05D006414 ORTHO05D007780 2.8e-21 107.5 193 32.1
CARHR247110 Cardamine hirsuta HOM05D006414 ORTHO05D007780 2.8e-21 107.5 168 34.5
HanXRQChr07g0202341 Helianthus annuus HOM05D006414 ORTHO05D007780 2.8e-21 107.5 150 37.3
QL06p032569 Quercus lobata HOM05D006414 ORTHO05D007780 3.7e-21 107.1 168 33.3
GSVIVG01022204001 Vitis vinifera HOM05D006414 ORTHO05D007780 4.8e-21 106.7 150 38.0
Sp7g36270 Schrenkiella parvula HOM05D006414 ORTHO05D007780 6.2e-21 106.3 168 33.3
Haze_14271 Corylus avellana HOM05D006414 ORTHO05D007780 8.1e-21 105.9 168 33.9
FvH4_4g12030 Fragaria vesca HOM05D006414 ORTHO05D007780 8.1e-21 105.9 168 34.5
Thecc.01G110400 Theobroma cacao HOM05D006414 ORTHO05D007780 8.1e-21 105.9 173 32.9
AT4G39620 Arabidopsis thaliana HOM05D006414 ORTHO05D007780 1.1e-20 105.5 168 33.9
arahy.Tifrunner.gnm1.ann1.S4ITMM Arachis hypogaea HOM05D006414 ORTHO05D007780 1.1e-20 105.5 150 35.3
Gorai.011G111900 Gossypium raimondii HOM05D006414 ORTHO05D007780 1.1e-20 105.5 150 36.7
Psat7g051760 Pisum sativum HOM05D006414 ORTHO05D007780 1.1e-20 105.5 150 35.3
CiPaw.04G093800 Carya illinoinensis HOM05D006414 ORTHO05D007780 1.4e-20 105.1 168 36.3
Sabra05G0067400 Salix brachista HOM05D006414 ORTHO05D007780 1.4e-20 105.1 150 38.0
Lsat_1_v5_gn_2_117881 Lactuca sativa HOM05D006414 ORTHO05D007780 1.8e-20 104.8 168 35.7
Lj4g0018166 Lotus japonicus HOM05D006414 ORTHO05D007780 2.4e-20 104.4 168 33.3
TPR.G2171 Trifolium pratense HOM05D006414 ORTHO05D007780 2.4e-20 104.4 150 35.3
EL10Ac6g14730 Beta vulgaris HOM05D006414 ORTHO05D007780 4.0e-20 103.6 168 34.5
ATR0681G202 Amborella trichopoda HOM05D006414 ORTHO05D007780 6.9e-20 102.8 168 33.9
Ca_17703_v3 Cicer arietinum L. HOM05D006414 ORTHO05D007780 6.9e-20 102.8 150 35.3
Glyma.08G140300 Glycine max HOM05D006414 ORTHO05D007780 6.9e-20 102.8 150 34.7
Potri.005G082400 Populus trichocarpa HOM05D006414 ORTHO05D007780 6.9e-20 102.8 150 36.0
TAR376G1012 Trochodendron aralioides HOM05D006414 ORTHO05D007780 9.0e-20 102.4 165 34.5
Cpa.g.sc2736.1 Carica papaya HOM05D006414 ORTHO05D007780 1.2e-19 102.1 171 33.9
CDE10G0169 Ceratophyllum demersum HOM05D006414 ORTHO05D007780 1.5e-19 101.7 150 35.3
Gohir.A10G086500 Gossypium hirsutum HOM05D006414 ORTHO05D007780 1.5e-19 101.7 150 35.3
Medtr8g091670 Medicago truncatula HOM05D006414 ORTHO05D007780 1.5e-19 101.7 150 34.7
Rhsim08G0008000 Rhododendron simsii HOM05D006414 ORTHO05D007780 1.5e-19 101.7 182 34.6
Duzib147G0014 Durio zibethinus HOM05D006414 ORTHO05D007780 2.6e-19 100.9 150 36.0
COL.COLO4_11035 Corchorus olitorius HOM05D006414 ORTHO05D007780 3.4e-19 100.5 132 39.4
Lalb_Chr07g0184891 Lupinus albus HOM05D006414 ORTHO05D007780 3.4e-19 100.5 170 31.8
PGR004G0335 Punica granatum HOM05D006414 ORTHO05D007780 3.4e-19 100.5 168 33.9
BraA01t00058Z Brassica rapa HOM05D006414 ORTHO05D007780 4.5e-19 100.1 181 31.5
Glyma.05G182700 Glycine max HOM05D006414 ORTHO05D007780 4.5e-19 100.1 192 29.7
Phvul.002G263600 Phaseolus vulgaris HOM05D006414 ORTHO05D007780 7.6e-19 99.4 150 32.7
FAN07G2537 Fragaria x ananassa HOM05D006414 ORTHO05D007780 1.0e-18 99.0 181 33.1
FAN12G1220 Fragaria x ananassa HOM05D006414 ORTHO05D007780 1.0e-18 99.0 181 33.1
FAN12G2815 Fragaria x ananassa HOM05D006414 ORTHO05D007780 1.0e-18 99.0 181 33.1
AagrBONN_evm.TU.Sc2ySwM_117.627 Anthoceros agrestis HOM05D006414 ORTHO05D007780 9.3e-17 92.4 168 31.5
Aqoxy5G00981 Aquilegia oxysepala HOM05D006414 ORTHO05D007780 3.5e-16 90.5 122 39.3
Mapoly0079s0007 Marchantia polymorpha HOM05D006414 ORTHO05D007780 3.5e-16 90.5 179 30.7
Pp3c4_9690 Physcomitrium patens HOM05D006414 ORTHO05D007780 4.6e-16 90.1 171 33.3
MD11G1203200 Malus domestica HOM05D006414 ORTHO05D007780 6.0e-16 89.7 119 41.2
SEGI_05645 Sequoiadendron giganteum HOM05D006414 ORTHO05D007780 7.9e-16 89.4 162 34.0
Pp3c8_4580 Physcomitrium patens HOM05D006414 ORTHO05D007780 1.3e-15 88.6 170 30.6
Rhsim05G0180100 Rhododendron simsii HOM05D006414 ORTHO05D007780 1.8e-15 88.2 133 34.6
FAN17G1880 Fragaria x ananassa HOM05D006414 ORTHO05D007780 2.3e-15 87.8 169 33.7
SGA_v2.0_scaffold2G01307 Striga asiatica HOM05D006414 ORTHO05D007780 2.3e-15 87.8 150 33.3
Nitab4.5_0002133g0010 Nicotiana tabacum HOM05D006414 ORTHO05D007780 8.7e-15 85.9 117 38.5
AagrBONN_evm.TU.Sc2ySwM_344.419 Anthoceros agrestis HOM05D006414 ORTHO05D007780 1.1e-14 85.5 151 31.1
Nn1g05205 Nelumbo nucifera HOM05D006414 ORTHO05D007780 1.9e-14 84.7 117 39.3
arahy.Tifrunner.gnm1.ann1.BPVH0U Arachis hypogaea HOM05D006414 ORTHO05D007780 9.6e-14 82.4 115 33.9
Manes.12G140500 Manihot esculenta HOM05D006414 ORTHO05D007780 4.8e-13 80.1 99 43.4
unitig_27.g25358 Utricularia gibba HOM05D006414 ORTHO05D007780 2.4e-12 77.8 92 45.7
CDE10G1362 Ceratophyllum demersum HOM05D006414 ORTHO05D007780 5.3e-12 76.6 99 40.4
VMungo0251G3283 Vigna mungo HOM05D006414 ORTHO05D007780 6.9e-12 76.3 99 39.4
Actinidia20120 Actinidia chinensis HOM05D006414 ORTHO05D007780 1.5e-11 75.1 193 24.9
Lj9A638T72 Lonicera japonica HOM05D001779 ORTHO05D001753 1.4e-09 68.6 192 30.2
Duzib138G0054 Durio zibethinus HOM05D001779 ORTHO05D001753 4.6e-08 63.5 161 28.0
EL10Ac7g17850 Beta vulgaris HOM05D001779 ORTHO05D001753 6.1e-08 63.2 159 28.3
Sc17g0002310 Simmondsia chinensis HOM05D001779 ORTHO05D001753 7.9e-08 62.8 181 27.6
Sc17g0002360 Simmondsia chinensis HOM05D001779 ORTHO05D001753 7.9e-08 62.8 181 27.6
Aa31LG10G8340 Aethionema arabicum HOM05D001779 ORTHO05D001753 1.0e-07 62.4 187 26.7
Migut.K01514 Erythranthe guttata HOM05D001779 ORTHO05D001753 1.0e-07 62.4 174 29.3
Migut.N00010 Erythranthe guttata HOM05D001779 ORTHO05D001753 1.0e-07 62.4 174 29.3
Os03g0824100 Oryza sativa ssp. japonica HOM05D006217 ORTHO05D008480 1.3e-07 62.0 206 30.1
TPR.G12657 Trifolium pratense HOM05D001779 ORTHO05D001753 1.3e-07 62.0 172 27.3
unitig_8.g2885 Utricularia gibba HOM05D001779 ORTHO05D001753 1.8e-07 61.6 166 27.1
THA.LOC104802670 Tarenaya hassleriana HOM05D001779 ORTHO05D001753 2.3e-07 61.2 227 26.0
PGSC0003DMG400008611 Solanum tuberosum HOM05D001779 ORTHO05D001753 3.0e-07 60.8 197 26.4
TPR.G36926 Trifolium pratense HOM05D007104 ORTHO05D008851 3.0e-07 60.8 203 27.6
MD10G1163400 Malus domestica HOM05D001779 ORTHO05D001753 3.9e-07 60.5 181 28.7
Aa31sc37G30 Aethionema arabicum HOM05D001779 ORTHO05D001753 5.1e-07 60.1 162 28.4
Thecc.01G224400 Theobroma cacao HOM05D001779 ORTHO05D001753 5.1e-07 60.1 172 27.9
Medtr7g056613 Medicago truncatula HOM05D001779 ORTHO05D001753 6.7e-07 59.7 202 26.7
RcHm_v2.0_Chr7g0231531 Rosa chinensis HOM05D001779 ORTHO05D001753 6.7e-07 59.7 196 28.1
Aqoxy5G00031 Aquilegia oxysepala HOM05D001779 ORTHO05D001753 8.7e-07 59.3 161 28.6
Cfa002578 Carpinus fangiana HOM05D001779 ORTHO05D001753 8.7e-07 59.3 181 27.6
Psat3g145680 Pisum sativum HOM05D001779 ORTHO05D001753 8.7e-07 59.3 202 26.7
CiPaw.04G104900 Carya illinoinensis HOM05D001779 ORTHO05D001753 1.1e-06 58.9 181 27.6
AUR62001095 Chenopodium quinoa HOM05D001779 ORTHO05D001753 1.1e-06 58.9 139 29.5
FAN08G2977 Fragaria x ananassa HOM05D001779 ORTHO05D001753 1.1e-06 58.9 196 27.0
Zm00001eb331750 Zea mays HOM05D006217 ORTHO05D008480 1.1e-06 58.9 207 29.0
AagrBONN_evm.TU.Sc2ySwM_117.1008 Anthoceros agrestis HOM05D006414 ORTHO05D007780 1.5e-06 58.5 142 28.9
FAN04G2077 Fragaria x ananassa HOM05D001779 ORTHO05D001753 1.5e-06 58.5 196 27.6
ATR0626G121 Amborella trichopoda HOM05D001779 ORTHO05D001753 1.9e-06 58.2 180 28.3
AUR62008921 Chenopodium quinoa HOM05D001779 ORTHO05D001753 1.9e-06 58.2 177 28.2
Haze_24811 Corylus avellana HOM05D001779 ORTHO05D001753 1.9e-06 58.2 181 27.6
Gohir.A11G138700 Gossypium hirsutum HOM05D001779 ORTHO05D001753 1.9e-06 58.2 161 27.3
Medtr7g100550 Medicago truncatula HOM05D007104 ORTHO05D008851 1.9e-06 58.2 204 27.9
Potri.002G243600 Populus trichocarpa HOM05D001779 ORTHO05D001753 1.9e-06 58.2 179 27.9
Prupe.8G201700 Prunus persica HOM05D001779 ORTHO05D001753 1.9e-06 58.2 197 26.9
HPP92_023347 Vanilla planifolia HOM05D001779 ORTHO05D001753 1.9e-06 58.2 198 27.3
arahy.Tifrunner.gnm1.ann1.V5R8RT Arachis hypogaea HOM05D001779 ORTHO05D001753 2.5e-06 57.8 232 24.1
Ca_08818_v3 Cicer arietinum L. HOM05D007104 ORTHO05D008851 2.5e-06 57.8 194 27.3
Cc06_g13040 Coffea canephora HOM05D003056 ORTHO05D003422 2.5e-06 57.8 184 25.0
TAR633G2615 Trochodendron aralioides HOM05D001779 ORTHO05D001753 2.5e-06 57.8 161 26.7
HPP92_022336 Vanilla planifolia HOM05D001779 ORTHO05D001753 2.5e-06 57.8 140 31.4
FvH4_5g33190 Fragaria vesca HOM05D001779 ORTHO05D001753 3.3e-06 57.4 196 27.0
FAN18G1972 Fragaria x ananassa HOM05D001779 ORTHO05D001753 3.3e-06 57.4 196 27.0
MBI07_g05481_MAGBIO Magnolia biondii HOM05D001779 ORTHO05D001753 3.3e-06 57.4 161 28.0
Dinv05937 Davidia involucrata HOM05D002785 ORTHO05D003042 4.3e-06 57.0 91 34.1
Peaxi162Scf00126g01125 Petunia axillaris HOM05D001779 ORTHO05D001753 4.3e-06 57.0 174 26.4
Psat7g235320 Pisum sativum HOM05D000001 ORTHO05D000003 4.3e-06 57.0 159 29.6
Glyma.14G007500 Glycine max HOM05D001779 ORTHO05D001753 5.7e-06 56.6 140 30.0
Lj6A358T55 Lonicera japonica HOM05D001779 ORTHO05D001753 5.7e-06 56.6 209 25.8
SEGI_02163 Sequoiadendron giganteum HOM05D007104 ORTHO05D008851 5.7e-06 56.6 168 29.8
Nn1g07882 Nelumbo nucifera HOM05D001779 ORTHO05D001753 7.4e-06 56.2 197 26.4
TPR.G5580 Trifolium pratense HOM05D000001 ORTHO05D000003 7.4e-06 56.2 159 29.6
Aa31LG3G17550 Aethionema arabicum HOM05D000300 ORTHO05D009414 9.7e-06 55.8 204 26.0
Lalb_Chr19g0125661 Lupinus albus HOM05D001779 ORTHO05D001753 9.7e-06 55.8 195 27.2
PSO832G0330 Papaver somniferum HOM05D001779 ORTHO05D001753 9.7e-06 55.8 172 27.9


User provided reference genes

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