Gene: Solyc04g054270.4

General Information

Structural Information

  • Species Solanum lycopersicum
  • Gene Identifier Solyc04g054270.4
  • Transcript Identifier Solyc04g054270.4.1
  • Gene Type Coding gene
  • Location SL4.0ch04 : 51557117-51559628 : positive

Gene Family Information

  • ID HOM05D006414
  • #Genes/#Species 124/89
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid Solyc04g054270.4.1
  • uniprot A0A3Q7G253
  • gene_id Solyc04g054270

Descriptions

  • Description Pentatricopeptide repeat (AHRD V3.3 *** A0A200PQB4_9MAGN)
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0032544
IBA
GOA Databaseplastid translation
GO:0000488
IBA
GOA Databasematuration of LSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
GO:0000489
IBA
GOA Databasematuration of SSU-rRNA from tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA)
GO:0000373
ISO
PLAZA Integrative OrthologyGroup II intron splicing Zm00001eb194340
GO:0009793
ISO
PLAZA Integrative Orthologyembryo development ending in seed dormancy AT4G39620
GO:0031425
ISO
PLAZA Integrative Orthologychloroplast RNA processing Zm00001eb194340

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005515
IEA
InterProprotein binding
GO:0003729
IEA
GOA DatabasemRNA binding
GO:0003729
IEA
InterPromRNA binding
GO:0003727
ISO
PLAZA Integrative Orthologysingle-stranded RNA binding Zm00001eb194340

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IBA
GOA Databasechloroplast

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002885 Pentatricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR044179 Pentatricopeptide repeat-containing protein PPR5-like
Mapman id Description
35.1 not assigned.annotated