Gene: AT4G39620

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT4G39620
  • Transcript Identifier AT4G39620.1
  • Gene Type Coding gene
  • Location Chr4 : 18395294-18397578 : positive

Gene Family Information

  • ID HOM05D006414
  • #Genes/#Species 124/89
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT4G39620.1
  • symbol EMB2453
  • Alias ATPPR5,A. THALIANA PENTATRICOPEPTIDE REPEAT 5
  • full_name EMBRYO DEFECTIVE 2453
  • uniprot Q9SV96

Descriptions

  • Description Tetratricopeptide repeat (TPR)-like superfamily protein
  • Computational description EMBRYO DEFECTIVE 2453 (EMB2453); INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: plastid transcriptionally active 2 (TAIR:AT1G74850.1); Has 39741 Blast hits to 13102 proteins in 279 species: Archae - 3; Bacteria - 42; Metazoa - 323; Fungi - 447; Plants - 37702; Viruses - 0; Other Eukaryotes - 1224 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009793
IMP
NAS
Gene Ontologyembryo development ending in seed dormancy1
GO:0000373
ISO
PLAZA Integrative OrthologyGroup II intron splicing Zm00001eb194340
GO:0031425
ISO
PLAZA Integrative Orthologychloroplast RNA processing Zm00001eb194340

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003729
IEA
Gene OntologymRNA binding
GO:0003729
IEA
InterPromRNA binding
GO:0005515
IEA
InterProprotein binding
GO:0003727
ISO
PLAZA Integrative Orthologysingle-stranded RNA binding Zm00001eb194340

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
ISM
Gene Ontologychloroplast
GO:0009536
IEA
GOA Databaseplastid

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR002885 Pentatricopeptide repeat
IPR011990 Tetratricopeptide-like helical domain superfamily
IPR044179 Pentatricopeptide repeat-containing protein PPR5-like
Mapman id Description
35.1 not assigned.annotated