Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SMO011G0007 Selaginella moellendorffii HOM05D005149 ORTHO05D006251 3.3e-223 778.1 400 100.0
Pp3c23_21630 Physcomitrium patens HOM05D005149 ORTHO05D006251 3.0e-107 392.9 426 53.3
TAR633G2177 Trochodendron aralioides HOM05D005149 ORTHO05D006251 1.8e-104 383.6 411 52.8
Sed0022214 Sechium edule HOM05D005149 ORTHO05D006251 2.6e-103 379.8 404 52.5
PSO339G6394 Papaver somniferum HOM05D005149 ORTHO05D006251 3.4e-103 379.4 412 52.7
RcHm_v2.0_Chr1g0331361 Rosa chinensis HOM05D005149 ORTHO05D006251 5.8e-103 378.6 415 52.8
CSS0030945 Camellia sinensis var. sinensis HOM05D005149 ORTHO05D006251 1.1e-101 374.4 426 52.3
FvH4_7g05040 Fragaria vesca HOM05D005149 ORTHO05D006251 5.4e-101 372.1 418 50.7
MELO3C011385.2 Cucumis melo HOM05D005149 ORTHO05D006251 9.2e-101 371.3 415 50.8
Manes.07G084100 Manihot esculenta HOM05D005149 ORTHO05D006251 9.2e-101 371.3 407 51.8
Ca_12171_v3 Cicer arietinum L. HOM05D005149 ORTHO05D006251 1.2e-100 370.9 412 52.4
Mapoly0072s0023 Marchantia polymorpha HOM05D005149 ORTHO05D006251 1.2e-100 370.9 428 50.9
Atru.chr12.1229 Acer truncatum HOM05D005149 ORTHO05D006251 1.6e-100 370.5 403 52.4
MBI19_g30303_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 2.7e-100 369.8 412 51.9
Potri.010G246400 Populus trichocarpa HOM05D005149 ORTHO05D006251 2.7e-100 369.8 417 51.8
CsaV3_6G035780 Cucumis sativus L. HOM05D005149 ORTHO05D006251 3.5e-100 369.4 406 51.7
FAN03G2277 Fragaria x ananassa HOM05D005149 ORTHO05D006251 3.5e-100 369.4 414 50.5
Migut.N01878 Erythranthe guttata HOM05D005149 ORTHO05D006251 4.6e-100 369.0 423 51.5
FAN12G0991 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.6e-100 369.0 419 50.4
FAN12G2325 Fragaria x ananassa HOM05D005149 ORTHO05D006251 4.6e-100 369.0 412 51.0
Hma1.2p1_0327F.1_g126330 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 4.6e-100 369.0 414 51.0
Phvul.011G187600 Phaseolus vulgaris HOM05D005149 ORTHO05D006251 4.6e-100 369.0 415 51.6
CiPaw.13G047200 Carya illinoinensis HOM05D005149 ORTHO05D006251 1.0e-99 367.9 419 52.5
HPP92_019772 Vanilla planifolia HOM05D005149 ORTHO05D006251 1.0e-99 367.9 410 51.5
Actinidia17467 Actinidia chinensis HOM05D005149 ORTHO05D006251 1.3e-99 367.5 421 51.1
Aqoxy1G01331 Aquilegia oxysepala HOM05D005149 ORTHO05D006251 1.3e-99 367.5 413 50.8
Psat0s3059g0040 Pisum sativum HOM05D005149 ORTHO05D006251 3.0e-99 366.3 413 53.5
Lalb_Chr03g0032361 Lupinus albus HOM05D005149 ORTHO05D006251 3.9e-99 365.9 420 50.5
vmacro20844 Vaccinium macrocarpon HOM05D005149 ORTHO05D006251 3.9e-99 365.9 424 50.2
FAN17G1198 Fragaria x ananassa HOM05D005149 ORTHO05D006251 5.1e-99 365.5 419 50.1
Medtr8g044150 Medicago truncatula HOM05D005149 ORTHO05D006251 6.6e-99 365.2 408 52.5
MD07G1054600 Malus domestica HOM05D005149 ORTHO05D006251 1.5e-98 364.0 417 51.3
TWI38G0882 Tripterygium wilfordii HOM05D005149 ORTHO05D006251 1.9e-98 363.6 407 49.6
Lalb_Chr19g0132531 Lupinus albus HOM05D005149 ORTHO05D006251 2.5e-98 363.2 406 52.5
Ciclev10015236m.g Citrus clementina HOM05D005149 ORTHO05D006251 3.3e-98 362.8 413 51.8
Ah.04g162660 Amaranthus hybridus HOM05D005149 ORTHO05D006251 1.6e-97 360.5 408 52.5
AagrBONN_evm.TU.Sc2ySwM_369.549 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.6e-97 360.5 409 52.3
FvH4_4g11870 Fragaria vesca HOM05D005149 ORTHO05D006251 1.6e-97 360.5 416 49.8
Oeu058668.1 Olea europaea HOM05D005149 ORTHO05D006251 2.1e-97 360.1 414 50.7
MD02G1263600 Malus domestica HOM05D005149 ORTHO05D006251 2.8e-97 359.8 421 50.8
Hund06827 Selenicereus undatus HOM05D005149 ORTHO05D006251 2.8e-97 359.8 417 49.6
AT5G04920 Arabidopsis thaliana HOM05D005149 ORTHO05D006251 4.7e-97 359.0 413 51.1
Haze_03404 Corylus avellana HOM05D005149 ORTHO05D006251 6.2e-97 358.6 428 50.0
A10p31210 Brassica napus HOM05D005149 ORTHO05D006251 1.1e-96 357.8 421 51.1
Thhalv10013568m.g Eutrema salsugineum HOM05D005149 ORTHO05D006251 1.1e-96 357.8 404 51.2
Sc09g0004900 Simmondsia chinensis HOM05D005149 ORTHO05D006251 1.1e-96 357.8 417 50.4
AL6G14620 Arabidopsis lyrata HOM05D005149 ORTHO05D006251 1.8e-96 357.1 413 50.6
PGSC0003DMG400027500 Solanum tuberosum HOM05D005149 ORTHO05D006251 4.0e-96 355.9 416 50.5
Lj3g0016494 Lotus japonicus HOM05D005149 ORTHO05D006251 5.2e-96 355.5 422 50.9
CANSAT56G0938 Cannabis sativa HOM05D005149 ORTHO05D006251 6.8e-96 355.1 427 49.2
Gohir.A11G310500 Gossypium hirsutum HOM05D005149 ORTHO05D006251 6.8e-96 355.1 424 50.2
PGR142G4466 Punica granatum HOM05D005149 ORTHO05D006251 6.8e-96 355.1 422 50.9
MSTRG.5085 Avicennia marina HOM05D005149 ORTHO05D006251 8.9e-96 354.8 417 49.6
Os01g0813500 Oryza sativa ssp. japonica HOM05D005149 ORTHO05D006251 8.9e-96 354.8 417 51.1
Sp6g37880 Schrenkiella parvula HOM05D005149 ORTHO05D006251 8.9e-96 354.8 404 50.7
Zm00001eb149970 Zea mays HOM05D005149 ORTHO05D006251 1.2e-95 354.4 411 51.6
Sopen01g040620 Solanum pennellii HOM05D005149 ORTHO05D006251 1.5e-95 354.0 410 50.2
THA.LOC104816483 Tarenaya hassleriana HOM05D005149 ORTHO05D006251 1.5e-95 354.0 405 50.9
EL10Ac4g08774 Beta vulgaris HOM05D005149 ORTHO05D006251 2.0e-95 353.6 400 50.5
FAN07G2641 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.0e-95 353.6 418 49.5
Carub.0006s0386 Capsella rubella HOM05D005149 ORTHO05D006251 3.4e-95 352.8 404 50.5
Gorai.006G271200 Gossypium raimondii HOM05D005149 ORTHO05D006251 4.4e-95 352.4 423 50.1
Glyma.08G228000 Glycine max HOM05D005149 ORTHO05D006251 5.8e-95 352.1 417 50.1
Gohir.A09G246100 Gossypium hirsutum HOM05D005149 ORTHO05D006251 5.8e-95 352.1 424 50.0
BolC9t59932H Brassica oleracea HOM05D005149 ORTHO05D006251 9.9e-95 351.3 417 50.6
Solyc01g096910.3 Solanum lycopersicum HOM05D005149 ORTHO05D006251 2.2e-94 350.1 410 49.8
Aa31LG11G5780 Aethionema arabicum HOM05D005149 ORTHO05D006251 2.9e-94 349.7 411 49.4
BraA10t45165Z Brassica rapa HOM05D005149 ORTHO05D006251 2.9e-94 349.7 418 50.2
ECA246G4563 Erigeron canadensis HOM05D005149 ORTHO05D006251 3.8e-94 349.4 412 49.5
Thecc.10G129400 Theobroma cacao HOM05D005149 ORTHO05D006251 3.8e-94 349.4 428 49.8
Gorai.013G207400 Gossypium raimondii HOM05D005149 ORTHO05D006251 4.9e-94 349.0 424 49.5
QL04p050393 Quercus lobata HOM05D005149 ORTHO05D006251 6.4e-94 348.6 442 48.0
C09p71830 Brassica napus HOM05D005149 ORTHO05D006251 1.1e-93 347.8 417 50.4
CARHR208340 Cardamine hirsuta HOM05D005149 ORTHO05D006251 1.1e-93 347.8 413 49.4
Gohir.D13G181800 Gossypium hirsutum HOM05D005149 ORTHO05D006251 3.2e-93 346.3 422 49.5
HanXRQChr06g0174201 Helianthus annuus HOM05D005149 ORTHO05D006251 4.2e-93 345.9 414 49.3
Carub.0010s0002 Capsella rubella HOM05D005149 ORTHO05D006251 1.2e-92 344.4 404 49.5
Cfa010450 Carpinus fangiana HOM05D005149 ORTHO05D006251 1.2e-92 344.4 448 48.7
Gohir.D09G246700 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.1e-92 343.6 424 49.3
AUR62014307 Chenopodium quinoa HOM05D005149 ORTHO05D006251 1.3e-91 340.9 417 49.4
arahy.Tifrunner.gnm1.ann1.PFS9H6 Arachis hypogaea HOM05D005149 ORTHO05D006251 6.6e-91 338.6 435 47.8
arahy.Tifrunner.gnm1.ann1.Q8TWNW Arachis hypogaea HOM05D005149 ORTHO05D006251 6.6e-91 338.6 435 47.8
CDE04G0393 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 6.6e-91 338.6 406 47.5
BcaC06g32201 Brassica carinata HOM05D005149 ORTHO05D006251 1.1e-90 337.8 423 49.6
SHI21243 Sapria himalayana HOM05D005149 ORTHO05D006251 1.5e-90 337.4 410 50.0
SHI05402 Sapria himalayana HOM05D005149 ORTHO05D006251 2.1e-89 333.6 399 50.1
unitig_749.g13551 Utricularia gibba HOM05D005149 ORTHO05D006251 1.5e-87 327.4 415 48.2
Eucgr.G02641 Eucalyptus grandis HOM05D005149 ORTHO05D006251 2.0e-87 327.0 376 50.8
FAN01G0635 Fragaria x ananassa HOM05D005149 ORTHO05D006251 2.0e-87 327.0 414 46.4
AUR62034100 Chenopodium quinoa HOM05D005149 ORTHO05D006251 2.6e-87 326.6 408 47.8
DCAR_023093 Daucus carota HOM05D005149 ORTHO05D006251 1.3e-86 324.3 385 50.1
Lj7C543G12 Lonicera japonica HOM05D005149 ORTHO05D006251 1.1e-85 321.2 478 43.3
CBR_g40666 Chara braunii HOM05D005149 ORTHO05D006251 4.6e-84 315.8 479 42.6
Peaxi162Scf00647g00319 Petunia axillaris HOM05D005149 ORTHO05D006251 4.6e-84 315.8 413 45.5
Nn2g14694 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.0e-83 314.7 351 53.8
SalBow4G1949 Salvia bowleyana HOM05D005149 ORTHO05D006251 1.3e-83 314.3 416 47.1
Zm00001eb369140 Zea mays HOM05D005149 ORTHO05D006251 5.1e-83 312.4 285 59.3
GSVIVG01010707001 Vitis vinifera HOM05D005149 ORTHO05D006251 2.5e-82 310.1 239 66.5
TPR.G35740 Trifolium pratense HOM05D005149 ORTHO05D006251 7.4e-82 308.5 239 65.3
CAN.G134.53 Capsicum annuum HOM05D005149 ORTHO05D006251 1.6e-81 307.4 240 65.4
Lsat_1_v5_gn_3_25820 Lactuca sativa HOM05D005149 ORTHO05D006251 4.8e-81 305.8 401 46.4
SGA_v2.0_scaffold196G40993 Striga asiatica HOM05D005149 ORTHO05D006251 8.1e-81 305.1 519 40.7
Dinv24594 Davidia involucrata HOM05D005149 ORTHO05D006251 6.9e-80 302.0 422 45.0
Sed0016259 Sechium edule HOM05D005149 ORTHO05D006251 4.5e-79 299.3 417 46.5
GSVIVG01027217001 Vitis vinifera HOM05D005149 ORTHO05D006251 4.9e-78 295.8 226 66.4
Cc02_g32050 Coffea canephora HOM05D005149 ORTHO05D006251 1.4e-77 294.3 227 67.0
Prupe.2G061300 Prunus persica HOM05D005149 ORTHO05D006251 1.7e-70 270.8 409 41.3
Hma1.2p1_0327F.1_g126340 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 5.7e-66 255.8 203 63.5
MCO16G624 Micromonas commoda HOM05D005149 ORTHO05D006251 3.8e-62 243.0 418 37.3
Nitab4.5_0005056g0010 Nicotiana tabacum HOM05D005149 ORTHO05D006251 2.4e-56 223.8 404 39.4
ATR0068G114 Amborella trichopoda HOM05D005149 ORTHO05D006251 3.8e-54 216.5 276 49.3
SEGI_09620 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.1e-50 204.9 283 47.3
Duzib106G0431 Durio zibethinus HOM05D005149 ORTHO05D006251 2.0e-50 204.1 420 37.1
Gohir.D13G182000 Gossypium hirsutum HOM05D005149 ORTHO05D006251 2.0e-50 204.1 304 45.4
PRCOL_00005700 Prasinoderma coloniale HOM05D005149 ORTHO05D006251 9.7e-50 201.8 263 43.7
Cre03.g159750 Chlamydomonas reinhardtii HOM05D005149 ORTHO05D006251 1.1e-48 198.4 259 44.0
Sabra08G0007600 Salix brachista HOM05D005149 ORTHO05D006251 1.0e-46 191.8 324 42.3
Nn2g14693 Nelumbo nucifera HOM05D005149 ORTHO05D006251 1.7e-46 191.0 144 63.2
Rhsim01G0121200 Rhododendron simsii HOM05D005149 ORTHO05D006251 1.1e-45 188.3 311 41.8
ClCG08G010780 Citrullus lanatus HOM05D005149 ORTHO05D006251 1.1e-42 178.3 268 45.1
SEGI_10345 Sequoiadendron giganteum HOM05D005149 ORTHO05D006251 1.5e-42 177.9 126 69.0
CAN.G134.55 Capsicum annuum HOM05D005149 ORTHO05D006251 3.3e-42 176.8 241 46.5
CDE02G4629 Ceratophyllum demersum HOM05D005149 ORTHO05D006251 1.6e-39 167.9 376 35.1
VMungo1127G0494 Vigna mungo HOM05D005149 ORTHO05D006251 1.2e-36 158.3 312 38.8
Cpa.g.c41130 Carica papaya HOM05D005149 ORTHO05D006251 9.1e-32 142.1 85 76.5
Cpa.g.sc54.64 Carica papaya HOM05D005149 ORTHO05D006251 5.9e-31 139.4 206 42.2
Cfa024879 Carpinus fangiana HOM05D005149 ORTHO05D006251 1.6e-28 131.3 320 33.4
Gorai.013G207600 Gossypium raimondii HOM05D005149 ORTHO05D006251 1.0e-27 128.6 106 65.1
VMungo1127G1160 Vigna mungo HOM05D005149 ORTHO05D000001 6.3e-25 119.4 74 70.3
Glyma.15G221000 Glycine max HOM05D005149 ORTHO05D006251 3.1e-24 117.1 97 62.9
Cpa.g.sc54.66 Carica papaya HOM05D005149 ORTHO05D006251 7.2e-21 105.9 196 37.2
Hma1.2p1_0327F.1_g126320 Hydrangea macrophylla HOM05D005149 ORTHO05D006251 8.8e-19 99.0 212 36.3
MD12G1098600 Malus domestica HOM05D005149 ORTHO05D006251 1.7e-17 94.7 84 59.5
AagrBONN_evm.TU.Sc2ySwM_369.516 Anthoceros agrestis HOM05D005149 ORTHO05D006251 8.3e-17 92.4 184 38.0
AagrBONN_evm.TU.Sc2ySwM_117.426 Anthoceros agrestis HOM05D005149 ORTHO05D006251 1.7e-14 84.7 176 36.4
ATR0068G025 Amborella trichopoda HOM05D005149 ORTHO05D006251 2.3e-14 84.3 76 56.6
Migut.O00436 Erythranthe guttata HOM05D005149 ORTHO05D006251 1.4e-11 75.1 189 34.4
COL.COLO4_28905 Corchorus olitorius HOM05D005149 ORTHO05D006251 6.8e-11 72.8 66 54.5
BolC2t06178H Brassica oleracea HOM05D005149 ORTHO05D006251 1.3e-09 68.6 69 59.4
Rhsim04G0076600 Rhododendron simsii HOM05D000030 ORTHO05D000009 1.3e-09 68.6 45 66.7
arahy.Tifrunner.gnm1.ann1.UR2VUR Arachis hypogaea HOM05D005149 ORTHO05D006251 2.2e-09 67.8 48 62.5
BcaC03g13138 Brassica carinata HOM05D005149 ORTHO05D006251 1.4e-08 65.1 81 44.4
BcaB04g17834 Brassica carinata HOM05D005149 ORTHO05D017514 3.5e-07 60.5 100 37.0
MBI14_g16397_MAGBIO Magnolia biondii HOM05D005149 ORTHO05D006251 5.0e-06 56.6 39 61.5


User provided reference genes

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