Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI21593 Sapria himalayana HOM05D003938 ORTHO05D045682 3.3e-63 245.0 131 100.0
Gohir.A05G003300 Gossypium hirsutum HOM05D003938 ORTHO05D004759 1.3e-08 63.5 34 85.3
Gohir.D05G003701 Gossypium hirsutum HOM05D003938 ORTHO05D004759 1.3e-08 63.5 34 85.3
Gorai.009G003300 Gossypium raimondii HOM05D003938 ORTHO05D004759 1.3e-08 63.5 34 85.3
Duzib168G1061 Durio zibethinus HOM05D003938 ORTHO05D004759 3.0e-08 62.4 34 82.4
arahy.Tifrunner.gnm1.ann1.TD7I6F Arachis hypogaea HOM05D003938 ORTHO05D004759 5.1e-08 61.6 37 75.7
Cc05_g16030 Coffea canephora HOM05D003938 ORTHO05D004759 5.1e-08 61.6 34 79.4
Migut.M01560 Erythranthe guttata HOM05D003938 ORTHO05D004759 5.1e-08 61.6 34 79.4
arahy.Tifrunner.gnm1.ann1.KA488U Arachis hypogaea HOM05D003938 ORTHO05D004759 8.7e-08 60.8 34 82.4
Manes.06G173850 Manihot esculenta HOM05D003938 ORTHO05D004759 1.1e-07 60.5 34 79.4
Potri.005G097500 Populus trichocarpa HOM05D003938 ORTHO05D004759 1.1e-07 60.5 34 79.4
Sabra05G0079800 Salix brachista HOM05D003938 ORTHO05D004759 1.1e-07 60.5 34 79.4
TWI74G0164 Tripterygium wilfordii HOM05D003938 ORTHO05D004759 1.1e-07 60.5 34 79.4
A08p00110 Brassica napus HOM05D000173 ORTHO05D008065 1.5e-07 60.1 40 67.5
Lalb_Chr01g0007211 Lupinus albus HOM05D003938 ORTHO05D004759 1.5e-07 60.1 34 79.4
Peaxi162Scf00452g00848 Petunia axillaris HOM05D003938 ORTHO05D004759 1.5e-07 60.1 34 76.5
Cpa.g.sc331.3 Carica papaya HOM05D003938 ORTHO05D004759 1.9e-07 59.7 34 82.4
DCAR_013743 Daucus carota HOM05D003938 ORTHO05D004759 1.9e-07 59.7 34 79.4
Lsat_1_v5_gn_7_71321 Lactuca sativa HOM05D003938 ORTHO05D004759 1.9e-07 59.7 34 79.4
Solyc07g066420.4 Solanum lycopersicum HOM05D003938 ORTHO05D004759 1.9e-07 59.7 34 73.5
Solyc12g049430.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 1.9e-07 59.7 34 73.5
Sopen02g012840 Solanum pennellii HOM05D003938 ORTHO05D004759 1.9e-07 59.7 34 76.5
Sopen07g034590 Solanum pennellii HOM05D003938 ORTHO05D004759 1.9e-07 59.7 34 73.5
Haze_07842 Corylus avellana HOM05D003938 ORTHO05D004759 2.5e-07 59.3 35 82.9
MD05G1222400 Malus domestica HOM05D003938 ORTHO05D004759 2.5e-07 59.3 34 79.4
MD10G1204000 Malus domestica HOM05D003938 ORTHO05D004759 2.5e-07 59.3 34 79.4
Oeu003830.4 Olea europaea HOM05D003938 ORTHO05D004759 2.5e-07 59.3 34 73.5
Prupe.4G137900 Prunus persica HOM05D003938 ORTHO05D004759 2.5e-07 59.3 34 79.4
PGR119G1566 Punica granatum HOM05D003938 ORTHO05D004759 2.5e-07 59.3 34 79.4
unitig_26.g10081 Utricularia gibba HOM05D003938 ORTHO05D004759 2.5e-07 59.3 34 73.5
AT1G53720 Arabidopsis thaliana HOM05D003938 ORTHO05D004759 3.3e-07 58.9 34 76.5
CAN.G943.34 Capsicum annuum HOM05D003938 ORTHO05D004759 3.3e-07 58.9 34 73.5
Aa31LG10G170 Aethionema arabicum HOM05D003938 ORTHO05D004759 4.3e-07 58.5 34 73.5
MSTRG.16112 Avicennia marina HOM05D003938 ORTHO05D004759 4.3e-07 58.5 34 79.4
SGA_v2.0_scaffold7G03579 Striga asiatica HOM05D003938 ORTHO05D004759 4.3e-07 58.5 34 70.6
THA.LOC104822756 Tarenaya hassleriana HOM05D003938 ORTHO05D004759 4.3e-07 58.5 34 73.5
TAR626G0088 Trochodendron aralioides HOM05D003938 ORTHO05D004759 4.3e-07 58.5 39 69.2
Glyma.15G213200 Glycine max HOM05D003938 ORTHO05D004759 5.7e-07 58.2 34 76.5
Glyma.19G004200 Glycine max HOM05D003938 ORTHO05D004759 5.7e-07 58.2 34 76.5
HanXRQChr05g0160881 Helianthus annuus HOM05D003938 ORTHO05D004759 5.7e-07 58.2 34 76.5
Nitab4.5_0001749g0120 Nicotiana tabacum HOM05D003938 ORTHO05D004759 5.7e-07 58.2 34 70.6
Psat4g174080 Pisum sativum HOM05D003938 ORTHO05D004759 5.7e-07 58.2 34 73.5
Thecc.09G180900 Theobroma cacao HOM05D003938 ORTHO05D004759 5.7e-07 58.2 34 76.5
VMungo1127G1769 Vigna mungo HOM05D003938 ORTHO05D004759 5.7e-07 58.2 34 76.5
AL1G62420 Arabidopsis lyrata HOM05D003938 ORTHO05D004759 7.4e-07 57.8 34 73.5
CARHR044020 Cardamine hirsuta HOM05D003938 ORTHO05D004759 7.4e-07 57.8 34 73.5
ECA240G3729 Erigeron canadensis HOM05D003938 ORTHO05D004759 7.4e-07 57.8 34 70.6
RcHm_v2.0_Chr5g0026161 Rosa chinensis HOM05D003938 ORTHO05D004759 7.4e-07 57.8 34 76.5
EL10Ac2g03350 Beta vulgaris HOM05D003938 ORTHO05D004759 9.7e-07 57.4 34 70.6
Carub.0008s0543 Capsella rubella HOM05D003938 ORTHO05D004759 9.7e-07 57.4 34 70.6
Ca_12645_v3 Cicer arietinum L. HOM05D003938 ORTHO05D004759 9.7e-07 57.4 34 73.5
Ciclev10004604m.g Citrus clementina HOM05D003938 ORTHO05D004759 9.7e-07 57.4 34 79.4
FvH4_3g15530 Fragaria vesca HOM05D003938 ORTHO05D004759 9.7e-07 57.4 34 76.5
FAN11G2591 Fragaria x ananassa HOM05D003938 ORTHO05D004759 9.7e-07 57.4 34 76.5
FAN21G1947 Fragaria x ananassa HOM05D003938 ORTHO05D004759 9.7e-07 57.4 34 76.5
FAN25G2080 Fragaria x ananassa HOM05D003938 ORTHO05D004759 9.7e-07 57.4 34 76.5
Lj3g0013935 Lotus japonicus HOM05D003938 ORTHO05D004759 9.7e-07 57.4 34 73.5
GSVIVG01020281001 Vitis vinifera HOM05D003938 ORTHO05D004759 9.7e-07 57.4 34 76.5
CiPaw.01G119900 Carya illinoinensis HOM05D003938 ORTHO05D004759 1.3e-06 57.0 34 79.4
Eucgr.F01467 Eucalyptus grandis HOM05D003938 ORTHO05D004759 1.3e-06 57.0 34 76.5
Thhalv10011414m.g Eutrema salsugineum HOM05D003938 ORTHO05D004759 1.3e-06 57.0 34 73.5
QL04p077101 Quercus lobata HOM05D003938 ORTHO05D004759 1.3e-06 57.0 34 79.4
QL04p077115 Quercus lobata HOM05D003938 ORTHO05D004759 1.3e-06 57.0 34 79.4
BcaB04g16924 Brassica carinata HOM05D003938 ORTHO05D004759 1.6e-06 56.6 35 71.4
BraA08t32068Z Brassica rapa HOM05D003938 ORTHO05D008065 1.6e-06 56.6 34 73.5
Carub.0001s4300 Capsella rubella HOM05D003938 ORTHO05D004759 1.6e-06 56.6 34 70.6
Sp1g38950 Schrenkiella parvula HOM05D003938 ORTHO05D004759 1.6e-06 56.6 34 73.5
Solyc02g061800.2 Solanum lycopersicum HOM05D003938 ORTHO05D004759 1.6e-06 56.6 34 73.5
TPR.G22448 Trifolium pratense HOM05D003938 ORTHO05D004759 1.6e-06 56.6 34 73.5
C03p93390 Brassica napus HOM05D003938 ORTHO05D008065 2.2e-06 56.2 34 73.5
BolC3t21636H Brassica oleracea HOM05D003938 ORTHO05D008065 2.2e-06 56.2 34 73.5
FvH4_4g19390 Fragaria vesca HOM05D003938 ORTHO05D045682 2.2e-06 56.2 34 76.5
Medtr6g084140 Medicago truncatula HOM05D003938 ORTHO05D004759 2.2e-06 56.2 34 73.5
Medtr8g442420 Medicago truncatula HOM05D003938 ORTHO05D004759 2.2e-06 56.2 34 73.5
Phvul.011G177175 Phaseolus vulgaris HOM05D003938 ORTHO05D004759 2.2e-06 56.2 34 73.5
CANSAT80G1380 Cannabis sativa HOM05D003938 ORTHO05D004759 2.8e-06 55.8 34 73.5
AUR62027709 Chenopodium quinoa HOM05D003938 ORTHO05D004759 2.8e-06 55.8 35 71.4
AUR62041826 Chenopodium quinoa HOM05D003938 ORTHO05D004759 2.8e-06 55.8 35 71.4
MBI01_g43614_MAGBIO Magnolia biondii HOM05D003938 ORTHO05D004759 2.8e-06 55.8 34 73.5
TPR.G9407 Trifolium pratense HOM05D003938 ORTHO05D004759 2.8e-06 55.8 34 73.5
Solyc12g038070.1 Solanum lycopersicum HOM05D003938 ORTHO05D004759 3.7e-06 55.5 49 51.0
CDE01G0219 Ceratophyllum demersum HOM05D003938 ORTHO05D004759 4.8e-06 55.1 34 73.5
Eucgr.F01469 Eucalyptus grandis HOM05D003938 ORTHO05D004759 4.8e-06 55.1 34 73.5
HPP92_008853 Vanilla planifolia HOM05D003938 ORTHO05D004759 4.8e-06 55.1 34 70.6
HPP92_008859 Vanilla planifolia HOM05D003938 ORTHO05D004759 4.8e-06 55.1 34 70.6
Actinidia07348 Actinidia chinensis HOM05D003938 ORTHO05D004759 6.3e-06 54.7 34 76.5
AUR62037621 Chenopodium quinoa HOM05D003938 ORTHO05D004759 6.3e-06 54.7 34 67.6
CSS0000259 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 8.2e-06 54.3 34 76.5
CSS0007376 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 8.2e-06 54.3 34 76.5
CSS0019207 Camellia sinensis var. sinensis HOM05D003938 ORTHO05D004759 8.2e-06 54.3 34 76.5
ClCG09G022610 Citrullus lanatus HOM05D003938 ORTHO05D004759 8.2e-06 54.3 34 73.5
MELO3C012622.2 Cucumis melo HOM05D003938 ORTHO05D004759 8.2e-06 54.3 34 73.5


User provided reference genes

Program Settings