Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI13672 Sapria himalayana HOM05D004823 ORTHO05D005814 7.7e-152 540.4 267 100.0
Cfa011006 Carpinus fangiana HOM05D004823 ORTHO05D005814 4.5e-51 205.7 192 55.7
Haze_02925 Corylus avellana HOM05D004823 ORTHO05D005814 1.7e-50 203.8 192 54.7
Potri.014G180200 Populus trichocarpa HOM05D004823 ORTHO05D005814 6.5e-50 201.8 190 55.3
TAR375G0889 Trochodendron aralioides HOM05D004823 ORTHO05D005814 4.2e-49 199.1 210 51.0
Sabra14G0140400 Salix brachista HOM05D004823 ORTHO05D005814 1.6e-48 197.2 236 47.0
QL04p025376 Quercus lobata HOM05D004823 ORTHO05D005814 3.5e-48 196.1 192 53.6
RcHm_v2.0_Chr1g0343241 Rosa chinensis HOM05D004823 ORTHO05D005814 3.5e-48 196.1 250 47.2
MD07G1085900 Malus domestica HOM05D004823 ORTHO05D005814 2.5e-46 189.9 215 50.2
GSVIVG01018404001 Vitis vinifera HOM05D004823 ORTHO05D005814 3.3e-46 189.5 197 51.3
FvH4_7g08480 Fragaria vesca HOM05D004823 ORTHO05D005814 4.3e-46 189.1 250 46.0
Ca_04616_v3 Cicer arietinum L. HOM05D004823 ORTHO05D005814 9.7e-46 188.0 253 47.8
FAN03G0722 Fragaria x ananassa HOM05D004823 ORTHO05D005814 9.7e-46 188.0 250 46.0
Actinidia33293 Actinidia chinensis HOM05D004823 ORTHO05D005814 1.3e-45 187.6 195 54.4
TWI23G0233 Tripterygium wilfordii HOM05D004823 ORTHO05D005814 1.6e-45 187.2 221 47.1
Atru.chr5.51 Acer truncatum HOM05D004823 ORTHO05D005814 2.2e-45 186.8 190 51.6
Manes.05G060200 Manihot esculenta HOM05D004823 ORTHO05D005814 2.2e-45 186.8 202 49.5
Atru.chr5.23 Acer truncatum HOM05D004823 ORTHO05D005814 2.8e-45 186.4 194 51.0
FAN06G0930 Fragaria x ananassa HOM05D004823 ORTHO05D005814 2.8e-45 186.4 250 47.2
Dinv31197 Davidia involucrata HOM05D004823 ORTHO05D005814 1.1e-44 184.5 215 47.4
FAN10G1986 Fragaria x ananassa HOM05D004823 ORTHO05D005814 1.1e-44 184.5 184 52.7
Psat3g163800 Pisum sativum HOM05D004823 ORTHO05D005814 2.4e-44 183.3 218 47.2
Thecc.10G001100 Theobroma cacao HOM05D004823 ORTHO05D005814 3.1e-44 183.0 197 48.2
Aqoxy7G00645 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 9.0e-44 181.4 186 52.7
Sopen01g035210 Solanum pennellii HOM05D004823 ORTHO05D005814 9.0e-44 181.4 207 48.8
Aqoxy5G01066 Aquilegia oxysepala HOM05D004823 ORTHO05D005814 1.2e-43 181.0 186 52.7
Solyc01g088380.3 Solanum lycopersicum HOM05D004823 ORTHO05D005814 2.6e-43 179.9 207 48.8
TPR.G14862 Trifolium pratense HOM05D004823 ORTHO05D005814 2.6e-43 179.9 227 49.3
Gorai.012G081700 Gossypium raimondii HOM05D004823 ORTHO05D005814 3.4e-43 179.5 192 49.0
Nn1g00608 Nelumbo nucifera HOM05D004823 ORTHO05D005814 3.4e-43 179.5 199 49.2
Duzib106G1753 Durio zibethinus HOM05D004823 ORTHO05D005814 4.5e-43 179.1 197 46.7
Hma1.2p1_0601F.1_g187160 Hydrangea macrophylla HOM05D004823 ORTHO05D005814 4.5e-43 179.1 215 47.4
Hma1.2p1_0601F.1_g187170 Hydrangea macrophylla HOM05D004823 ORTHO05D005814 4.5e-43 179.1 215 47.4
CSS0005414 Camellia sinensis var. sinensis HOM05D004823 ORTHO05D005814 5.9e-43 178.7 197 49.2
Gohir.D04G072675 Gossypium hirsutum HOM05D004823 ORTHO05D005814 7.7e-43 178.3 192 49.0
Gohir.A05G333800 Gossypium hirsutum HOM05D004823 ORTHO05D005814 1.0e-42 177.9 197 48.7
Ciclev10018521m.g Citrus clementina HOM05D004823 ORTHO05D005814 2.9e-42 176.4 215 44.7
CAN.G1480.3 Capsicum annuum HOM05D004823 ORTHO05D005814 5.0e-42 175.6 189 50.8
vmacro21094 Vaccinium macrocarpon HOM05D004823 ORTHO05D005814 5.0e-42 175.6 197 48.2
Lj1g0025017 Lotus japonicus HOM05D004823 ORTHO05D005814 6.5e-42 175.3 200 50.5
Phvul.005G016100 Phaseolus vulgaris HOM05D004823 ORTHO05D005814 6.5e-42 175.3 200 47.5
CsaV3_3G010270 Cucumis sativus L. HOM05D004823 ORTHO05D005814 1.4e-41 174.1 223 44.4
CANSAT21G1834 Cannabis sativa HOM05D004823 ORTHO05D005814 1.9e-41 173.7 199 49.2
PGR083G0266 Punica granatum HOM05D004823 ORTHO05D005814 9.4e-41 171.4 204 47.1
AUR62023352 Chenopodium quinoa HOM05D004823 ORTHO05D005814 1.2e-40 171.0 202 47.5
BcaC07g41923 Brassica carinata HOM05D004823 ORTHO05D005814 1.6e-40 170.6 215 44.7
Oeu034864.1 Olea europaea HOM05D004823 ORTHO05D005814 2.1e-40 170.2 185 49.7
CARHR008760 Cardamine hirsuta HOM05D004823 ORTHO05D005814 2.7e-40 169.9 216 44.4
Medtr7g034575 Medicago truncatula HOM05D004823 ORTHO05D005814 2.7e-40 169.9 205 51.2
ClCG05G002760 Citrullus lanatus HOM05D004823 ORTHO05D005814 3.6e-40 169.5 220 45.5
Sc08g0006560 Simmondsia chinensis HOM05D004823 ORTHO05D005814 3.6e-40 169.5 195 47.7
C08p49810 Brassica napus HOM05D004823 ORTHO05D005814 4.6e-40 169.1 193 48.7
BolC8t52508H Brassica oleracea HOM05D004823 ORTHO05D005814 4.6e-40 169.1 193 48.7
ECA234G1924 Erigeron canadensis HOM05D004823 ORTHO05D005814 6.1e-40 168.7 217 45.6
Sed0025177 Sechium edule HOM05D004823 ORTHO05D005814 6.1e-40 168.7 201 45.8
Cc00_g16960 Coffea canephora HOM05D004823 ORTHO05D005814 1.0e-39 167.9 209 47.4
Lsat_1_v5_gn_4_44681 Lactuca sativa HOM05D004823 ORTHO05D005814 1.0e-39 167.9 193 48.2
Migut.B01471 Erythranthe guttata HOM05D004823 ORTHO05D005814 1.4e-39 167.5 205 44.9
Aa31sc17G210 Aethionema arabicum HOM05D004823 ORTHO05D005814 1.8e-39 167.2 196 48.0
AUR62013806 Chenopodium quinoa HOM05D004823 ORTHO05D005814 1.8e-39 167.2 202 47.5
MD02G1227500 Malus domestica HOM05D004823 ORTHO05D005814 1.8e-39 167.2 185 50.3
Prupe.2G112200 Prunus persica HOM05D004823 ORTHO05D005814 1.8e-39 167.2 192 50.0
THA.LOC104808236 Tarenaya hassleriana HOM05D004823 ORTHO05D005814 1.8e-39 167.2 237 41.8
BraA09t41917Z Brassica rapa HOM05D004823 ORTHO05D005814 2.3e-39 166.8 215 43.7
A09p65740 Brassica napus HOM05D004823 ORTHO05D005814 3.9e-39 166.0 215 43.7
Carub.0001s0819 Capsella rubella HOM05D004823 ORTHO05D005814 3.9e-39 166.0 215 45.1
Eucgr.D01139 Eucalyptus grandis HOM05D004823 ORTHO05D005814 3.9e-39 166.0 194 46.9
Sp1g07480 Schrenkiella parvula HOM05D004823 ORTHO05D005814 3.9e-39 166.0 223 44.8
CiPaw.14G012800 Carya illinoinensis HOM05D004823 ORTHO05D005814 5.1e-39 165.6 198 47.0
DCAR_029534 Daucus carota HOM05D004823 ORTHO05D005814 5.1e-39 165.6 183 50.8
AL1G19270 Arabidopsis lyrata HOM05D004823 ORTHO05D005814 6.7e-39 165.2 215 45.6
Peaxi162Scf01124g00124 Petunia axillaris HOM05D004823 ORTHO05D005814 8.8e-39 164.9 203 47.8
arahy.Tifrunner.gnm1.ann1.61K3Y7 Arachis hypogaea HOM05D004823 ORTHO05D005814 1.1e-38 164.5 203 50.7
MELO3C006248.2 Cucumis melo HOM05D004823 ORTHO05D005814 1.1e-38 164.5 223 43.9
HanXRQChr08g0226321 Helianthus annuus HOM05D004823 ORTHO05D005814 1.5e-38 164.1 267 40.4
AT1G08840 Arabidopsis thaliana HOM05D004823 ORTHO05D005814 2.5e-38 163.3 197 47.7
Hund17140 Selenicereus undatus HOM05D004823 ORTHO05D005814 2.5e-38 163.3 147 55.1
arahy.Tifrunner.gnm1.ann1.GG1KFP Arachis hypogaea HOM05D004823 ORTHO05D005814 3.3e-38 162.9 201 50.2
EL10Ac8g19253 Beta vulgaris HOM05D004823 ORTHO05D005814 3.3e-38 162.9 192 49.0
Thhalv10006571m.g Eutrema salsugineum HOM05D004823 ORTHO05D005814 4.3e-38 162.5 191 47.6
Peaxi162Scf00417g00039 Petunia axillaris HOM05D004823 ORTHO05D005814 7.4e-38 161.8 203 46.8
SGA_v2.0_scaffold578G53026 Striga asiatica HOM05D004823 ORTHO05D005814 7.4e-38 161.8 193 44.6
Ah.15g091500 Amaranthus hybridus HOM05D004823 ORTHO05D005814 9.7e-38 161.4 196 46.4
Nitab4.5_0006227g0020 Nicotiana tabacum HOM05D004823 ORTHO05D005814 2.8e-37 159.8 153 55.6
COL.COLO4_19317 Corchorus olitorius HOM05D004823 ORTHO05D005814 3.7e-37 159.5 197 45.2
Glyma.06G310500 Glycine max HOM05D004823 ORTHO05D005814 3.7e-37 159.5 200 46.5
Rhsim01G0145100 Rhododendron simsii HOM05D004823 ORTHO05D005814 8.2e-37 158.3 195 49.2
Nitab4.5_0013532g0020 Nicotiana tabacum HOM05D004823 ORTHO05D005814 1.1e-36 157.9 153 54.9
Zm00001eb072560 Zea mays HOM05D004823 ORTHO05D005814 2.4e-36 156.8 190 50.0
Os04g0588200 Oryza sativa ssp. japonica HOM05D004823 ORTHO05D005814 3.1e-36 156.4 190 47.4
FAN10G0616 Fragaria x ananassa HOM05D004823 ORTHO05D005814 6.9e-36 155.2 145 54.5
VMungo1080G1086 Vigna mungo HOM05D004823 ORTHO05D005814 2.0e-35 153.7 200 44.0
SEGI_24819 Sequoiadendron giganteum HOM05D066805 ORTHO05D005814 4.5e-35 152.5 203 41.9
ATR0705G062 Amborella trichopoda HOM05D004823 ORTHO05D005814 5.0e-34 149.1 194 45.4
HPP92_003322 Vanilla planifolia HOM05D004823 ORTHO05D005814 6.5e-34 148.7 123 57.7
HPP92_003323 Vanilla planifolia HOM05D004823 ORTHO05D005814 6.5e-34 148.7 123 57.7
CDE11G0754 Ceratophyllum demersum HOM05D004823 ORTHO05D005814 1.9e-33 147.1 184 46.7
PSO063G2621 Papaver somniferum HOM05D004823 ORTHO05D005814 1.9e-33 147.1 193 42.0
PSO782G4318 Papaver somniferum HOM05D004823 ORTHO05D005814 3.2e-33 146.4 191 44.0
AagrBONN_evm.TU.Sc2ySwM_362.2737 Anthoceros agrestis HOM05D004823 ORTHO05D005814 4.4e-30 136.0 132 51.5
Lj7C553G7 Lonicera japonica HOM05D004823 ORTHO05D005814 5.7e-30 135.6 94 64.9
Mapoly0039s0120 Marchantia polymorpha HOM05D004823 ORTHO05D005814 1.7e-29 134.0 130 54.6
Cpa.g.sc10.21 Carica papaya HOM05D004823 ORTHO05D005814 2.9e-26 123.2 154 47.4
unitig_8.g3844 Utricularia gibba HOM05D004823 ORTHO05D005814 7.2e-25 118.6 121 47.1
MBI13_g01094_MAGBIO Magnolia biondii HOM05D002050 ORTHO05D001949 1.6e-24 117.5 90 56.7
SEGI_04973 Sequoiadendron giganteum HOM05D004823 ORTHO05D005814 1.4e-23 114.4 81 61.7
CBR_g41486 Chara braunii HOM05D004823 ORTHO05D005814 1.4e-20 104.4 134 47.0
Psat2g050440 Pisum sativum HOM05D004823 ORTHO05D036791 7.0e-20 102.1 113 43.4
MBI05_g27233_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 7.7e-19 98.6 66 60.6
Psat2g050360 Pisum sativum HOM05D004823 ORTHO05D005814 7.7e-19 98.6 96 46.9
Psat5g098920 Pisum sativum HOM05D004823 ORTHO05D005814 1.7e-18 97.4 91 48.4
RcHm_v2.0_Chr2g0122961 Rosa chinensis HOM05D004823 ORTHO05D005814 5.0e-18 95.9 78 59.0
MBI17_g09706_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 1.9e-17 94.0 66 57.6
MBI08_g06419_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 8.0e-16 88.6 65 55.4
MBI08_g07078_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 1.8e-15 87.4 66 57.6
Cc07_g20090 Coffea canephora HOM05D004823 ORTHO05D005814 9.8e-14 81.6 60 58.3
Cfa026676 Carpinus fangiana HOM05D004823 ORTHO05D005814 2.2e-10 70.5 130 36.2
Lalb_Chr03g0040711 Lupinus albus HOM05D004823 ORTHO05D005814 1.9e-09 67.4 42 71.4
Cc07_g20080 Coffea canephora HOM05D004823 ORTHO05D005814 5.5e-09 65.9 121 34.7
Lalb_Chr03g0040701 Lupinus albus HOM05D004823 ORTHO05D005814 5.5e-09 65.9 107 43.0
PRCOL_00002243 Prasinoderma coloniale HOM05D004823 ORTHO05D005814 1.4e-07 61.2 101 30.7
arahy.Tifrunner.gnm1.ann1.3YFD1D Arachis hypogaea HOM05D000922 ORTHO05D005814 2.6e-06 57.0 38 68.4
MBI15_g07200_MAGBIO Magnolia biondii HOM05D004823 ORTHO05D005814 7.5e-06 55.5 39 48.7


User provided reference genes

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