Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SHI07326 Sapria himalayana HOM05D004842 ORTHO05D005929 6.7e-253 877.1 517 100.0
Potri.011G156900 Populus trichocarpa HOM05D004842 ORTHO05D005929 5.7e-228 794.3 517 90.7
Sabra11G0143100 Salix brachista HOM05D004842 ORTHO05D005929 1.3e-227 793.1 517 90.7
CsaV3_2G033060 Cucumis sativus L. HOM05D004842 ORTHO05D005929 1.6e-222 776.2 515 84.9
ClCG11G008790 Citrullus lanatus HOM05D004842 ORTHO05D005929 2.7e-222 775.4 513 84.4
CSS0028462 Camellia sinensis var. sinensis HOM05D004842 ORTHO05D005929 3.6e-222 775.0 515 89.3
HanXRQChr04g0123031 Helianthus annuus HOM05D004842 ORTHO05D005929 2.0e-220 769.2 516 89.0
GSVIVG01007685001 Vitis vinifera HOM05D004842 ORTHO05D005929 2.0e-220 769.2 515 89.3
Cpa.g.sc20.22 Carica papaya HOM05D004842 ORTHO05D005929 7.5e-220 767.3 517 88.2
CiPaw.03G017600 Carya illinoinensis HOM05D004842 ORTHO05D005929 7.5e-220 767.3 515 89.5
Ca_21945_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 7.5e-220 767.3 515 89.7
Dinv33198 Davidia involucrata HOM05D004842 ORTHO05D005929 7.5e-220 767.3 515 88.9
Eucgr.E01768 Eucalyptus grandis HOM05D004842 ORTHO05D005929 2.8e-219 765.4 515 89.3
Glyma.08G128700 Glycine max HOM05D004842 ORTHO05D005929 3.7e-219 765.0 515 89.1
Cfa008117 Carpinus fangiana HOM05D004842 ORTHO05D005929 3.1e-218 761.9 515 88.0
Medtr3g052220 Medicago truncatula HOM05D004842 ORTHO05D005929 3.1e-218 761.9 515 86.8
PGR031G3502 Punica granatum HOM05D004842 ORTHO05D005929 4.1e-218 761.5 515 83.9
HanXRQChr15g0492161 Helianthus annuus HOM05D004842 ORTHO05D005929 5.4e-218 761.1 516 87.8
Sed0014706 Sechium edule HOM05D004842 ORTHO05D005929 5.4e-218 761.1 515 83.7
ECA232G0634 Erigeron canadensis HOM05D004842 ORTHO05D005929 9.1e-218 760.4 516 88.2
Phvul.002G251300 Phaseolus vulgaris HOM05D004842 ORTHO05D005929 9.1e-218 760.4 515 88.5
CANSAT25G2510 Cannabis sativa HOM05D004842 ORTHO05D005929 1.6e-217 759.6 515 87.2
Nn1g01353 Nelumbo nucifera HOM05D004842 ORTHO05D005929 1.6e-217 759.6 515 88.5
Psat5g178560 Pisum sativum HOM05D004842 ORTHO05D005929 2.0e-217 759.2 515 88.3
Lalb_Chr11g0075451 Lupinus albus HOM05D004842 ORTHO05D005929 2.7e-217 758.8 515 88.3
Actinidia01552 Actinidia chinensis HOM05D004842 ORTHO05D005929 7.7e-217 757.3 515 87.4
Lj6g0012354 Lotus japonicus HOM05D004842 ORTHO05D005929 1.3e-216 756.5 515 88.2
Atru.chr13.2273 Acer truncatum HOM05D004842 ORTHO05D005929 1.7e-216 756.1 517 88.2
Thecc.08G195800 Theobroma cacao HOM05D004842 ORTHO05D005929 2.9e-216 755.4 515 83.9
Hma1.2p1_0150F.1_g066770 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 3.8e-216 755.0 515 82.9
MD08G1215900 Malus domestica HOM05D004842 ORTHO05D005929 3.8e-216 755.0 515 86.2
Gohir.A13G118200 Gossypium hirsutum HOM05D004842 ORTHO05D005929 5.0e-216 754.6 515 84.1
Lj9C410G7 Lonicera japonica HOM05D004842 ORTHO05D005929 8.5e-216 753.8 515 88.3
TWI14G0987 Tripterygium wilfordii HOM05D004842 ORTHO05D005929 8.5e-216 753.8 517 87.0
Gohir.D13G122000 Gossypium hirsutum HOM05D004842 ORTHO05D005929 1.1e-215 753.4 515 86.8
Cc10_g16460 Coffea canephora HOM05D004842 ORTHO05D005929 1.5e-215 753.1 515 87.6
DCAR_005757 Daucus carota HOM05D004842 ORTHO05D005929 1.5e-215 753.1 515 87.6
CDE04G2825 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 2.5e-215 752.3 515 87.4
THA.LOC104813908 Tarenaya hassleriana HOM05D004842 ORTHO05D005929 2.5e-215 752.3 517 87.2
Duzib177G0537 Durio zibethinus HOM05D004842 ORTHO05D005929 3.2e-215 751.9 515 82.9
Lsat_1_v5_gn_0_10701 Lactuca sativa HOM05D004842 ORTHO05D005929 3.2e-215 751.9 516 87.8
TAR374G0778 Trochodendron aralioides HOM05D004842 ORTHO05D005929 3.2e-215 751.9 515 87.2
VMungo0251G2201 Vigna mungo HOM05D004842 ORTHO05D005929 5.5e-215 751.1 508 88.6
Thhalv10018372m.g Eutrema salsugineum HOM05D004842 ORTHO05D005929 7.2e-215 750.7 517 85.7
MSTRG.25488 Avicennia marina HOM05D004842 ORTHO05D005929 9.5e-215 750.4 515 87.2
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 2.8e-214 748.8 515 87.0
Gorai.013G136700 Gossypium raimondii HOM05D004842 ORTHO05D005929 3.6e-214 748.4 515 86.6
Aqoxy7G00451 Aquilegia oxysepala HOM05D004842 ORTHO05D005929 4.7e-214 748.0 514 87.4
Prupe.1G547900 Prunus persica HOM05D004842 ORTHO05D005929 4.7e-214 748.0 515 86.0
CDE03G0432 Ceratophyllum demersum HOM05D004842 ORTHO05D005929 1.4e-213 746.5 515 86.8
Hund07225 Selenicereus undatus HOM05D004842 ORTHO05D005929 3.0e-213 745.3 515 87.0
MSTRG.1576 Avicennia marina HOM05D004842 ORTHO05D005929 8.8e-213 743.8 515 85.4
Aa31LG7G3010 Aethionema arabicum HOM05D004842 ORTHO05D005929 1.5e-212 743.0 517 86.3
Glyma.05G170500 Glycine max HOM05D004842 ORTHO05D005929 3.7e-211 738.4 515 87.4
COL.COLO4_26800 Corchorus olitorius HOM05D004842 ORTHO05D005929 8.3e-211 737.3 540 80.0
Migut.C01340 Erythranthe guttata HOM05D004842 ORTHO05D005929 1.1e-210 736.9 515 86.2
SalBow8G3404 Salvia bowleyana HOM05D004842 ORTHO05D005929 2.4e-210 735.7 516 86.0
Rhsim12G0003800 Rhododendron simsii HOM05D004842 ORTHO05D005929 7.0e-210 734.2 508 85.0
Os01g0322800 Oryza sativa ssp. japonica HOM05D004842 ORTHO05D005929 1.2e-209 733.4 515 85.0
PGSC0003DMG400005186 Solanum tuberosum HOM05D004842 ORTHO05D005929 1.6e-209 733.0 515 84.3
AUR62006879 Chenopodium quinoa HOM05D004842 ORTHO05D005929 2.0e-209 732.6 515 80.6
Sopen06g023340 Solanum pennellii HOM05D004842 ORTHO05D005929 2.7e-209 732.3 515 84.3
CARHR066790 Cardamine hirsuta HOM05D004842 ORTHO05D005929 4.5e-209 731.5 517 79.1
QL09p004408 Quercus lobata HOM05D004842 ORTHO05D005929 5.9e-209 731.1 514 80.9
Solyc06g064830.3 Solanum lycopersicum HOM05D004842 ORTHO05D005929 7.8e-209 730.7 515 84.1
Ciclev10010841m.g Citrus clementina HOM05D004842 ORTHO05D005929 2.3e-208 729.2 517 86.3
Sp5g28910 Schrenkiella parvula HOM05D004842 ORTHO05D005929 5.0e-208 728.0 517 79.5
BcaB03g15725 Brassica carinata HOM05D004842 ORTHO05D005929 8.6e-208 727.2 517 79.1
MD15G1400300 Malus domestica HOM05D004842 ORTHO05D005929 1.5e-207 726.5 515 85.4
arahy.Tifrunner.gnm1.ann1.907RVD Arachis hypogaea HOM05D004842 ORTHO05D005929 4.3e-207 724.9 515 86.6
RcHm_v2.0_Chr7g0230731 Rosa chinensis HOM05D004842 ORTHO05D005929 4.3e-207 724.9 515 80.2
SGA_v2.0_scaffold24G10617 Striga asiatica HOM05D004842 ORTHO05D005929 5.6e-207 724.5 537 73.6
SGA_v2.0_scaffold118G32576 Striga asiatica HOM05D004842 ORTHO05D005929 9.5e-207 723.8 508 85.8
PSO478G2485 Papaver somniferum HOM05D004842 ORTHO05D005929 8.0e-206 720.7 515 84.9
Nitab4.5_0006477g0030 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.0e-205 720.3 508 84.8
PSO782G1233 Papaver somniferum HOM05D004842 ORTHO05D005929 1.0e-205 720.3 515 84.7
ATR0757G167 Amborella trichopoda HOM05D004842 ORTHO05D005929 1.4e-205 719.9 516 84.9
Carub.0002s2047 Capsella rubella HOM05D004842 ORTHO05D005929 1.4e-205 719.9 517 80.7
FvH4_5g32860 Fragaria vesca HOM05D004842 ORTHO05D005929 6.8e-205 717.6 515 79.6
FAN18G3613 Fragaria x ananassa HOM05D004842 ORTHO05D005929 6.8e-205 717.6 515 79.6
AL2G33520 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.4e-202 709.9 504 82.5
MBI04_g37683_MAGBIO Magnolia biondii HOM05D004842 ORTHO05D005929 1.2e-201 706.8 511 83.2
FAN04G0777 Fragaria x ananassa HOM05D004842 ORTHO05D005929 7.8e-201 704.1 543 75.7
Mapoly0044s0021 Marchantia polymorpha HOM05D004842 ORTHO05D005929 7.8e-201 704.1 515 81.9
A07p39580 Brassica napus HOM05D004842 ORTHO05D005929 1.3e-200 703.4 517 80.5
BcaB03g15078 Brassica carinata HOM05D004842 ORTHO05D005929 1.1e-199 700.3 517 80.3
C06p47870 Brassica napus HOM05D004842 ORTHO05D005929 1.1e-199 700.3 515 80.4
BolC6t39822H Brassica oleracea HOM05D004842 ORTHO05D005929 1.1e-199 700.3 515 80.4
FAN08G0446 Fragaria x ananassa HOM05D004842 ORTHO05D005929 6.2e-198 694.5 515 78.4
Dinv07060 Davidia involucrata HOM05D004842 ORTHO05D005929 3.4e-196 688.7 515 73.2
arahy.Tifrunner.gnm1.ann1.VU3SB5 Arachis hypogaea HOM05D004842 ORTHO05D005929 2.4e-194 682.6 536 78.2
Pp3c11_23660 Physcomitrium patens HOM05D004842 ORTHO05D005929 7.0e-194 681.0 515 77.9
Nitab4.5_0001799g0050 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.6e-193 679.9 511 82.6
Nitab4.5_0006564g0010 Nicotiana tabacum HOM05D004842 ORTHO05D005929 1.6e-193 679.9 489 83.8
AT1G73720 Arabidopsis thaliana HOM05D004842 ORTHO05D005929 2.0e-193 679.5 517 80.3
AagrBONN_evm.TU.Sc2ySwM_369.510 Anthoceros agrestis HOM05D004842 ORTHO05D005929 3.0e-192 675.6 558 74.4
Pp3c7_2610 Physcomitrium patens HOM05D004842 ORTHO05D005929 3.0e-192 675.6 515 79.2
BraA07t31507Z Brassica rapa HOM05D004842 ORTHO05D005929 6.6e-192 674.5 522 77.8
AUR62000532 Chenopodium quinoa HOM05D004842 ORTHO05D005929 3.6e-190 668.7 515 72.0
CANSAT21G1785 Cannabis sativa HOM05D004842 ORTHO05D005929 8.9e-189 664.1 526 79.1
unitig_748.g7731 Utricularia gibba HOM05D004842 ORTHO05D005929 3.4e-188 662.1 553 67.6
TAR375G0910 Trochodendron aralioides HOM05D004842 ORTHO05D005929 2.2e-187 659.4 461 88.3
CBR_g5735 Chara braunii HOM05D004842 ORTHO05D005929 4.9e-187 658.3 515 78.1
Sc20g0002260 Simmondsia chinensis HOM05D004842 ORTHO05D005929 8.6e-184 647.5 465 85.8
SMO119G0417 Selaginella moellendorffii HOM05D004842 ORTHO05D005929 1.5e-183 646.7 517 69.4
Peaxi162Scf00688g00227 Petunia axillaris HOM05D004842 ORTHO05D005929 9.5e-183 644.0 488 80.9
Manes.01G021200 Manihot esculenta HOM05D004842 ORTHO05D005929 2.9e-179 632.5 434 90.8
Nitab4.5_0000748g0110 Nicotiana tabacum HOM05D004842 ORTHO05D005929 7.3e-175 617.8 515 78.4
vmacro00929 Vaccinium macrocarpon HOM05D004842 ORTHO05D005929 2.8e-174 615.9 439 84.5
COL.COLO4_24626 Corchorus olitorius HOM05D004842 ORTHO05D005929 4.0e-173 612.1 432 87.5
SEGI_07677 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 2.4e-154 549.7 409 84.6
BcaC08g46793 Brassica carinata HOM05D004842 ORTHO05D005929 1.8e-152 543.5 517 68.3
Cre01.g020400 Chlamydomonas reinhardtii HOM05D004842 ORTHO05D005929 1.9e-146 523.5 516 65.3
EL10Ac4g09640 Beta vulgaris HOM05D004842 ORTHO05D005929 5.3e-133 478.8 269 86.6
TPR.G33753 Trifolium pratense HOM05D004842 ORTHO05D005929 3.9e-128 462.6 251 90.8
Zm00001eb130810 Zea mays HOM05D004842 ORTHO05D005929 5.3e-117 425.6 309 77.7
Hma1.2p1_1698F.1_g298123 Hydrangea macrophylla HOM05D004842 ORTHO05D005929 7.0e-117 425.2 326 79.4
EL10Ac4g09644 Beta vulgaris HOM05D004842 ORTHO05D005929 8.5e-107 391.7 385 57.4
arahy.Tifrunner.gnm1.ann1.6AWP8P Arachis hypogaea HOM05D004842 ORTHO05D005929 3.1e-101 373.2 207 90.3
arahy.Tifrunner.gnm1.ann1.UIX0GM Arachis hypogaea HOM05D004842 ORTHO05D005929 7.0e-101 372.1 207 89.9
Lj9C233G3 Lonicera japonica HOM05D004842 ORTHO05D005929 1.1e-90 338.2 365 71.8
Actinidia15960 Actinidia chinensis HOM05D004842 ORTHO05D005929 2.7e-76 290.4 261 77.4
PRCOL_00002301 Prasinoderma coloniale HOM05D004842 ORTHO05D005929 7.5e-71 272.3 524 47.7
EL10Ac4g09638 Beta vulgaris HOM05D004842 ORTHO05D005929 2.0e-63 247.7 179 80.4
Haze_13915 Corylus avellana HOM05D004842 ORTHO05D005929 1.7e-59 234.6 131 89.3
C06p33880 Brassica napus HOM05D004842 ORTHO05D005929 8.1e-57 225.7 528 33.7
Ca_03946_v3 Cicer arietinum L. HOM05D004842 ORTHO05D005929 1.0e-43 182.2 154 60.4
PSO384G0554 Papaver somniferum HOM05D004842 ORTHO05D005929 7.4e-42 176.0 99 81.8
Haze_27333 Corylus avellana HOM05D004842 ORTHO05D005929 8.4e-38 162.5 295 44.1
Cpa.g.c40110 Carica papaya HOM05D004842 ORTHO05D005929 1.6e-36 158.3 80 92.5
Sabra16G0312200 Salix brachista HOM05D004842 ORTHO05D005929 4.3e-34 150.2 242 44.6
RcHm_v2.0_Chr6g0269341 Rosa chinensis HOM05D004842 ORTHO05D005929 3.4e-31 140.6 106 71.7
AL6G46370 Arabidopsis lyrata HOM05D004842 ORTHO05D005929 1.7e-30 138.3 302 32.1
SEGI_19922 Sequoiadendron giganteum HOM05D004842 ORTHO05D005929 1.7e-30 138.3 77 85.7
BolC2t07949H Brassica oleracea HOM05D004842 ORTHO05D005929 3.8e-30 137.1 137 59.1
BolC3t17856H Brassica oleracea HOM05D004842 ORTHO05D005929 5.7e-26 123.2 70 81.4
BolC5t34511H Brassica oleracea HOM05D004842 ORTHO05D005929 3.7e-25 120.6 69 79.7
C05p58610 Brassica napus HOM05D004842 ORTHO05D009094 3.4e-23 114.0 64 78.1
BolC4t22950H Brassica oleracea HOM05D004842 ORTHO05D005929 3.4e-23 114.0 64 78.1
Duzib211G0352 Durio zibethinus HOM05D004842 ORTHO05D005929 1.4e-19 102.1 56 78.6
Glyma.04G106300 Glycine max HOM05D004842 ORTHO05D005929 8.8e-19 99.4 73 65.8
Glyma.04G149500 Glycine max HOM05D004842 ORTHO05D005929 8.8e-19 99.4 73 65.8
TPR.G15252 Trifolium pratense HOM05D004842 ORTHO05D005929 6.3e-17 93.2 51 80.4
BolC6t38501H Brassica oleracea HOM05D004842 ORTHO05D005929 1.8e-16 91.7 50 74.0
Actinidia15961 Actinidia chinensis HOM05D004842 ORTHO05D005929 5.9e-15 86.7 126 40.5
Actinidia15959 Actinidia chinensis HOM05D004842 ORTHO05D005929 1.0e-14 85.9 47 91.5
ECA238G3245 Erigeron canadensis HOM05D000757 ORTHO05D000622 8.5e-14 82.8 45 80.0
TPR.G33759 Trifolium pratense HOM05D004842 ORTHO05D005929 7.2e-13 79.7 134 72.4
ECA248G1356 Erigeron canadensis HOM05D006056 ORTHO05D007136 1.6e-12 78.6 45 75.6
Cfa012955 Carpinus fangiana HOM05D002874 ORTHO05D003250 5.1e-11 73.6 36 83.3
Sed0018019 Sechium edule HOM05D004842 ORTHO05D005929 3.3e-10 70.9 33 90.9
TPR.G36494 Trifolium pratense HOM05D009291 ORTHO05D010716 1.7e-06 58.5 34 73.5
C04p47590 Brassica napus HOM05D007212 ORTHO05D009094 6.5e-06 56.6 35 68.6


User provided reference genes

Program Settings