Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold8G04653 Striga asiatica HOM05D004922 ORTHO05D005990 9.8e-237 823.2 443 100.0
Sabra09G0054700 Salix brachista HOM05D004922 ORTHO05D005990 4.7e-29 133.3 124 62.1
Ciclev10022785m.g Citrus clementina HOM05D004922 ORTHO05D005990 1.0e-28 132.1 146 54.8
DCAR_000537 Daucus carota HOM05D004922 ORTHO05D005990 1.4e-28 131.7 108 67.6
GSVIVG01029076001 Vitis vinifera HOM05D004922 ORTHO05D005990 3.0e-28 130.6 108 66.7
MELO3C018062.2 Cucumis melo HOM05D004922 ORTHO05D005990 4.0e-28 130.2 124 62.1
CsaV3_3G028790 Cucumis sativus L. HOM05D004922 ORTHO05D005990 4.0e-28 130.2 124 62.1
Cc01_g17260 Coffea canephora HOM05D004922 ORTHO05D005990 5.2e-28 129.8 108 66.7
Eucgr.H03678 Eucalyptus grandis HOM05D004922 ORTHO05D005990 5.2e-28 129.8 108 66.7
Phvul.002G196500 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 5.2e-28 129.8 108 66.7
THA.LOC104818942 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 5.2e-28 129.8 108 66.7
THA.LOC104827350 Tarenaya hassleriana HOM05D004922 ORTHO05D005990 5.2e-28 129.8 108 66.7
HanXRQChr10g0287281 Helianthus annuus HOM05D004922 ORTHO05D005990 6.8e-28 129.4 142 54.2
Aqoxy1G00374 Aquilegia oxysepala HOM05D004922 ORTHO05D005990 8.8e-28 129.0 108 64.8
Lj4g0004779 Lotus japonicus HOM05D004922 ORTHO05D005990 8.8e-28 129.0 108 65.7
Rhsim02G0053600 Rhododendron simsii HOM05D004922 ORTHO05D005990 8.8e-28 129.0 113 64.6
Atru.chr8.785 Acer truncatum HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
arahy.Tifrunner.gnm1.ann1.AXK6HV Arachis hypogaea HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
arahy.Tifrunner.gnm1.ann1.N94L43 Arachis hypogaea HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
CANSAT01G0689 Cannabis sativa HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
CANSAT01G1757 Cannabis sativa HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
Ca_18278_v3 Cicer arietinum L. HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
COL.COLO4_37469 Corchorus olitorius HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
Dinv04668 Davidia involucrata HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
Duzib138G1451 Durio zibethinus HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
Glyma.08G082700 Glycine max HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
Gohir.A07G155600 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
Gohir.A11G136000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
Gohir.D11G142400 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
Gorai.001G185300 Gossypium raimondii HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
Gorai.007G152700 Gossypium raimondii HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
Hma1.2p1_1061F.1_g253320 Hydrangea macrophylla HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
Manes.12G042100 Manihot esculenta HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
Manes.13G044200 Manihot esculenta HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
Medtr4g094600 Medicago truncatula HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
Phvul.001G007400 Phaseolus vulgaris HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
Psat7g092040 Pisum sativum HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
PGR044G2430 Punica granatum HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
QL09p007931 Quercus lobata HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
QL09p044611 Quercus lobata HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
RcHm_v2.0_Chr2g0121221 Rosa chinensis HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
Sed0006654 Sechium edule HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
Thecc.01G228800 Theobroma cacao HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
TPR.G4933 Trifolium pratense HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
TWI09G0408 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
TWI59G0402 Tripterygium wilfordii HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
TAR365G0710 Trochodendron aralioides HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
TAR636G3017 Trochodendron aralioides HOM05D004922 ORTHO05D005990 1.2e-27 128.6 108 65.7
ClCG07G001790 Citrullus lanatus HOM05D004922 ORTHO05D005990 1.5e-27 128.3 108 64.8
Gohir.D07G162000 Gossypium hirsutum HOM05D004922 ORTHO05D005990 1.5e-27 128.3 108 64.8
Sed0024440 Sechium edule HOM05D004922 ORTHO05D005990 1.5e-27 128.3 108 64.8
TPR.G1594 Trifolium pratense HOM05D004922 ORTHO05D005990 1.5e-27 128.3 108 64.8
CSS0022478 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 2.0e-27 127.9 107 66.4
CSS0038803 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 2.0e-27 127.9 107 66.4
CiPaw.03G151500 Carya illinoinensis HOM05D004922 ORTHO05D005990 2.0e-27 127.9 107 66.4
CiPaw.04G107000 Carya illinoinensis HOM05D004922 ORTHO05D005990 2.0e-27 127.9 107 66.4
CDE02G4734 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 2.0e-27 127.9 108 65.7
Peaxi162Scf00047g01222 Petunia axillaris HOM05D004922 ORTHO05D005990 2.0e-27 127.9 107 66.4
Prupe.8G205100 Prunus persica HOM05D004922 ORTHO05D005990 2.0e-27 127.9 108 65.7
SEGI_22867 Sequoiadendron giganteum HOM05D004922 ORTHO05D005990 2.0e-27 127.9 108 65.7
Aa31LG5G17580 Aethionema arabicum HOM05D004922 ORTHO05D005990 2.6e-27 127.5 108 64.8
CSS0043203 Camellia sinensis var. sinensis HOM05D004922 ORTHO05D005990 2.6e-27 127.5 108 64.8
Cpa.g.sc3.67 Carica papaya HOM05D004922 ORTHO05D005990 2.6e-27 127.5 107 65.4
Dinv19219 Davidia involucrata HOM05D004922 ORTHO05D005990 2.6e-27 127.5 108 64.8
Duzib133G0821 Durio zibethinus HOM05D004922 ORTHO05D005990 2.6e-27 127.5 108 64.8
Lalb_Chr07g0188871 Lupinus albus HOM05D004922 ORTHO05D005990 2.6e-27 127.5 108 64.8
PSO210G2196 Papaver somniferum HOM05D004922 ORTHO05D005990 2.6e-27 127.5 108 63.9
PSO591G0020 Papaver somniferum HOM05D004922 ORTHO05D005990 2.6e-27 127.5 108 63.9
PSO832G2289 Papaver somniferum HOM05D004922 ORTHO05D005990 2.6e-27 127.5 108 63.9
Glyma.05G127900 Glycine max HOM05D004922 ORTHO05D005990 3.4e-27 127.1 108 64.8
Potri.001G277900 Populus trichocarpa HOM05D004922 ORTHO05D005990 3.4e-27 127.1 106 66.0
Potri.009G072500 Populus trichocarpa HOM05D004922 ORTHO05D005990 3.4e-27 127.1 106 66.0
Sabra16G0171900 Salix brachista HOM05D004922 ORTHO05D005990 3.4e-27 127.1 106 66.0
Actinidia35950 Actinidia chinensis HOM05D004922 ORTHO05D005990 4.4e-27 126.7 107 65.4
CAN.G500.78 Capsicum annuum HOM05D004922 ORTHO05D005990 4.4e-27 126.7 107 65.4
Haze_24774 Corylus avellana HOM05D004922 ORTHO05D005990 4.4e-27 126.7 107 65.4
ECA236G1627 Erigeron canadensis HOM05D004922 ORTHO05D005990 4.4e-27 126.7 108 64.8
Migut.D00519 Erythranthe guttata HOM05D004922 ORTHO05D005990 4.4e-27 126.7 108 63.9
Peaxi162Scf00122g00811 Petunia axillaris HOM05D004922 ORTHO05D005990 4.4e-27 126.7 107 65.4
SalBow3G3780 Salvia bowleyana HOM05D004922 ORTHO05D005990 4.4e-27 126.7 107 65.4
Solyc09g091500.3 Solanum lycopersicum HOM05D004922 ORTHO05D005990 4.4e-27 126.7 107 65.4
Sopen09g034430 Solanum pennellii HOM05D004922 ORTHO05D005990 4.4e-27 126.7 107 65.4
PGSC0003DMG400029651 Solanum tuberosum HOM05D004922 ORTHO05D005990 4.4e-27 126.7 107 65.4
AL8G22040 Arabidopsis lyrata HOM05D004922 ORTHO05D005990 5.7e-27 126.3 117 61.5
FAN19G2048 Fragaria x ananassa HOM05D004922 ORTHO05D005990 5.7e-27 126.3 131 55.7
HPP92_027867 Vanilla planifolia HOM05D004922 ORTHO05D005990 5.7e-27 126.3 108 63.9
AT5G48870 Arabidopsis thaliana HOM05D004922 ORTHO05D005990 7.5e-27 125.9 117 61.5
FvH4_1g24390 Fragaria vesca HOM05D004922 ORTHO05D005990 7.5e-27 125.9 108 63.9
FAN23G2197 Fragaria x ananassa HOM05D004922 ORTHO05D005990 7.5e-27 125.9 108 63.9
FAN28G0422 Fragaria x ananassa HOM05D004922 ORTHO05D005990 7.5e-27 125.9 108 63.9
HanXRQChr04g0110651 Helianthus annuus HOM05D004922 ORTHO05D005990 7.5e-27 125.9 108 64.8
Lsat_1_v5_gn_8_90161 Lactuca sativa HOM05D004922 ORTHO05D005990 7.5e-27 125.9 108 64.8
MD05G1178700 Malus domestica HOM05D004922 ORTHO05D005990 7.5e-27 125.9 107 65.4
MD10G1167200 Malus domestica HOM05D004922 ORTHO05D005990 7.5e-27 125.9 107 65.4
EL10Ac4g08876 Beta vulgaris HOM05D004922 ORTHO05D005990 9.8e-27 125.6 107 64.5
Carub.0008s0859 Capsella rubella HOM05D004922 ORTHO05D005990 9.8e-27 125.6 117 60.7
FAN26G0321 Fragaria x ananassa HOM05D004922 ORTHO05D005990 9.8e-27 125.6 107 64.5
FAN26G0401 Fragaria x ananassa HOM05D004922 ORTHO05D005990 9.8e-27 125.6 107 64.5
Nn7g37520 Nelumbo nucifera HOM05D004922 ORTHO05D005990 9.8e-27 125.6 107 64.5
Lalb_Chr13g0291421 Lupinus albus HOM05D004922 ORTHO05D005990 1.3e-26 125.2 108 63.9
Sc05g0002390 Simmondsia chinensis HOM05D004922 ORTHO05D005990 1.3e-26 125.2 105 65.7
Ah.06g191400 Amaranthus hybridus HOM05D004922 ORTHO05D005990 1.7e-26 124.8 107 64.5
Thhalv10005202m.g Eutrema salsugineum HOM05D004922 ORTHO05D005990 1.7e-26 124.8 108 63.0
SMO118G0467 Selaginella moellendorffii HOM05D004922 ORTHO05D005990 1.7e-26 124.8 108 63.9
Mapoly0016s0054 Marchantia polymorpha HOM05D004922 ORTHO05D005990 2.2e-26 124.4 108 63.9
Lalb_Chr11g0067741 Lupinus albus HOM05D004922 ORTHO05D005990 3.7e-26 123.6 108 62.0
AagrBONN_evm.TU.Sc2ySwM_228.5635 Anthoceros agrestis HOM05D004922 ORTHO05D005990 4.9e-26 123.2 108 63.0
Nitab4.5_0002920g0030 Nicotiana tabacum HOM05D004922 ORTHO05D005990 4.9e-26 123.2 107 62.6
Nitab4.5_0003904g0020 Nicotiana tabacum HOM05D004922 ORTHO05D005990 4.9e-26 123.2 107 62.6
unitig_8.g3754 Utricularia gibba HOM05D004922 ORTHO05D005990 6.3e-26 122.9 108 60.2
Migut.N00343 Erythranthe guttata HOM05D004922 ORTHO05D005990 8.3e-26 122.5 107 62.6
Pp3c1_36020 Physcomitrium patens HOM05D004922 ORTHO05D005990 8.3e-26 122.5 110 63.6
CARHR182850 Cardamine hirsuta HOM05D004922 ORTHO05D005990 1.8e-25 121.3 105 62.9
Sp2g19260 Schrenkiella parvula HOM05D004922 ORTHO05D005990 1.8e-25 121.3 105 62.9
MCO15G079 Micromonas commoda HOM05D004922 ORTHO05D005990 2.4e-25 120.9 108 59.3
unitig_22.g5302 Utricularia gibba HOM05D004922 ORTHO05D005990 2.4e-25 120.9 108 59.3
Os05g0389300 Oryza sativa ssp. japonica HOM05D004922 ORTHO05D005990 4.1e-25 120.2 105 63.8
Zm00001eb287110 Zea mays HOM05D004922 ORTHO05D005990 4.1e-25 120.2 105 63.8
Zm00001eb350780 Zea mays HOM05D004922 ORTHO05D005990 4.1e-25 120.2 105 63.8
BcaB04g19588 Brassica carinata HOM05D004922 ORTHO05D005990 4.5e-24 116.7 111 59.5
Lj6C614G9 Lonicera japonica HOM05D003979 ORTHO05D005530 1.0e-23 115.5 110 60.9
BcaB07g30046 Brassica carinata HOM05D004922 ORTHO05D005990 2.3e-23 114.4 107 59.8
BcaC03g17679 Brassica carinata HOM05D004922 ORTHO05D005990 2.3e-23 114.4 107 59.8
BcaC04g23758 Brassica carinata HOM05D004922 ORTHO05D005990 2.3e-23 114.4 107 59.8
A02p37760 Brassica napus HOM05D004922 ORTHO05D005990 2.3e-23 114.4 107 59.8
A09p04660 Brassica napus HOM05D004922 ORTHO05D005990 2.3e-23 114.4 107 59.8
C02p56860 Brassica napus HOM05D004922 ORTHO05D005990 2.3e-23 114.4 107 59.8
C09p04970 Brassica napus HOM05D004922 ORTHO05D005990 2.3e-23 114.4 107 59.8
BolC2t11755H Brassica oleracea HOM05D004922 ORTHO05D005990 2.3e-23 114.4 107 59.8
BraA02t08759Z Brassica rapa HOM05D004922 ORTHO05D005990 2.3e-23 114.4 107 59.8
BraA09t36102Z Brassica rapa HOM05D004922 ORTHO05D005990 2.3e-23 114.4 107 59.8
BolC9t53426H Brassica oleracea HOM05D004922 ORTHO05D005990 2.9e-23 114.0 107 58.9
CDE05G0301 Ceratophyllum demersum HOM05D004922 ORTHO05D005990 6.8e-20 102.8 66 77.3
PRCOL_00003510 Prasinoderma coloniale HOM05D004922 ORTHO05D005990 2.0e-19 101.3 105 48.6
Actinidia39954 Actinidia chinensis HOM05D004922 ORTHO05D005990 4.4e-19 100.1 61 78.7
Oeu016707.1 Olea europaea HOM05D004922 ORTHO05D005990 3.7e-18 97.1 50 92.0
ATR0580G296 Amborella trichopoda HOM05D004922 ORTHO05D005990 4.9e-18 96.7 48 95.8
Hund05521 Selenicereus undatus HOM05D004922 ORTHO05D005990 8.3e-18 95.9 50 92.0
MD10G1019300 Malus domestica HOM05D004922 ORTHO05D005990 2.4e-17 94.4 50 90.0
Atru.chr10.1425 Acer truncatum HOM05D004922 ORTHO05D005990 3.2e-17 94.0 51 88.2
CSS0022600 Camellia sinensis var. sinensis HOM05D001390 ORTHO05D001522 1.2e-16 92.0 57 77.2
vmacro19014 Vaccinium macrocarpon HOM05D001390 ORTHO05D001522 4.6e-16 90.1 57 73.7
HPP92_006337 Vanilla planifolia HOM05D004922 ORTHO05D005990 5.9e-16 89.7 108 51.9
Haze_26353 Corylus avellana HOM05D004922 ORTHO05D005990 5.0e-15 86.7 105 41.9
MD00G1053800 Malus domestica HOM05D004922 ORTHO05D005990 6.6e-15 86.3 86 58.1
Haze_15657 Corylus avellana HOM05D001390 ORTHO05D001522 1.1e-14 85.5 75 61.3
A03p57700 Brassica napus HOM05D001390 ORTHO05D001522 1.9e-14 84.7 121 45.5
C07p55910 Brassica napus HOM05D001390 ORTHO05D001522 1.9e-14 84.7 121 45.5
Actinidia28564 Actinidia chinensis HOM05D001390 ORTHO05D030884 3.3e-14 84.0 58 69.0
DCAR_016272 Daucus carota HOM05D001390 ORTHO05D001522 3.3e-14 84.0 103 48.5
AUR62033984 Chenopodium quinoa HOM05D004922 ORTHO05D005990 4.3e-14 83.6 83 57.8
ClCG06G001240 Citrullus lanatus HOM05D001390 ORTHO05D001522 4.3e-14 83.6 107 47.7
DCAR_023130 Daucus carota HOM05D004922 ORTHO05D005990 7.3e-14 82.8 83 56.6
CARHR182860 Cardamine hirsuta HOM05D004922 ORTHO05D005990 6.2e-13 79.7 97 51.5
BcaC05g25466 Brassica carinata HOM05D001390 ORTHO05D001522 5.8e-11 73.2 46 71.7
ECA170G0003 Erigeron canadensis HOM05D001390 ORTHO05D013105 1.7e-10 71.6 60 63.3
HanXRQChr11g0331491 Helianthus annuus HOM05D004922 ORTHO05D005990 1.7e-10 71.6 83 51.8
MELO3C010197.2 Cucumis melo HOM05D001390 ORTHO05D001522 7.0e-09 66.2 108 37.0
CSS0022005 Camellia sinensis var. sinensis HOM05D001390 ORTHO05D001522 2.7e-08 64.3 40 70.0
GSVIVG01023693001 Vitis vinifera HOM05D001390 ORTHO05D001522 3.9e-07 60.5 70 51.4
EL10Ac1g01454 Beta vulgaris HOM05D004922 ORTHO05D005990 3.3e-06 57.4 29 89.7
SGA_v2.0_scaffold363G49932 Striga asiatica HOM05D001390 ORTHO05D013105 3.3e-06 57.4 39 64.1
GSVIVG01036092001 Vitis vinifera HOM05D001390 ORTHO05D018488 3.3e-06 57.4 37 75.7
Nitab4.5_0002809g0030 Nicotiana tabacum HOM05D001390 ORTHO05D001522 5.6e-06 56.6 34 79.4
QL04p003614 Quercus lobata HOM05D003599 ORTHO05D004221 5.6e-06 56.6 59 45.8


User provided reference genes

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