Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold83G26445 Striga asiatica HOM05D003791 ORTHO05D004961 0.0e+00 1778.1 874 100.0
Migut.N02533 Erythranthe guttata HOM05D003791 ORTHO05D004961 0.0e+00 1533.1 840 89.2
CSS0014729 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1468.4 842 84.9
SalBow3G1938 Salvia bowleyana HOM05D003791 ORTHO05D004961 0.0e+00 1464.9 842 85.9
Oeu035522.1 Olea europaea HOM05D003791 ORTHO05D004961 0.0e+00 1463.7 899 81.1
Rhsim13G0102400 Rhododendron simsii HOM05D003791 ORTHO05D004961 0.0e+00 1458.4 844 84.7
Atru.chr3.3491 Acer truncatum HOM05D003791 ORTHO05D004961 0.0e+00 1454.5 843 83.3
CiPaw.13G143800 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1450.6 843 82.8
GSVIVG01031443001 Vitis vinifera HOM05D003791 ORTHO05D004961 0.0e+00 1450.3 843 83.4
Actinidia07195 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1448.0 839 84.7
Hma1.2p1_0051F.1_g029640 Hydrangea macrophylla HOM05D003791 ORTHO05D004961 0.0e+00 1444.9 846 84.2
COL.COLO4_19230 Corchorus olitorius HOM05D003791 ORTHO05D004961 0.0e+00 1443.3 830 83.3
Sopen11g026300 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1442.9 842 82.7
Cfa010128 Carpinus fangiana HOM05D003791 ORTHO05D004961 0.0e+00 1442.6 844 82.7
Thecc.09G295700 Theobroma cacao HOM05D003791 ORTHO05D004961 0.0e+00 1441.8 842 82.7
Solyc11g066560.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1440.6 843 82.4
Nitab4.5_0000173g0320 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1439.9 843 82.8
Manes.11G154100 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1439.5 823 84.3
Peaxi162Scf00150g00213 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1439.5 868 81.5
Actinidia24158 Actinidia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1437.2 820 85.5
CAN.G1432.22 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1433.7 843 82.7
CAN.G546.67 Capsicum annuum HOM05D003791 ORTHO05D004961 0.0e+00 1433.7 843 82.0
Haze_23510 Corylus avellana HOM05D003791 ORTHO05D004961 0.0e+00 1431.0 868 80.3
PGR102G1149 Punica granatum HOM05D003791 ORTHO05D004961 0.0e+00 1431.0 845 82.7
TWI79G0622 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 0.0e+00 1426.4 842 81.8
Potri.001G212700 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1426.0 842 82.7
Manes.04G011800 Manihot esculenta HOM05D003791 ORTHO05D004961 0.0e+00 1425.2 823 82.6
Solyc06g074740.3 Solanum lycopersicum HOM05D003791 ORTHO05D004961 0.0e+00 1423.7 843 82.2
Cc01_g10100 Coffea canephora HOM05D003791 ORTHO05D004961 0.0e+00 1419.4 844 81.6
Nitab4.5_0004517g0020 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1418.7 860 80.8
Ciclev10027764m.g Citrus clementina HOM05D003791 ORTHO05D004961 0.0e+00 1418.3 844 81.9
Gohir.D08G013600 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1417.1 842 81.2
Eucgr.B03911 Eucalyptus grandis HOM05D003791 ORTHO05D004961 0.0e+00 1414.8 823 82.6
Gohir.D09G087100 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1414.8 838 81.6
Gorai.004G007900 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1414.8 841 80.9
Sopen06g031150 Solanum pennellii HOM05D003791 ORTHO05D004961 0.0e+00 1413.3 840 81.7
Lj3g0020816 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1412.5 827 82.3
MD11G1151700 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1411.4 842 80.8
Gohir.A08G003200 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1409.4 842 80.8
Gohir.A09G087400 Gossypium hirsutum HOM05D003791 ORTHO05D004961 0.0e+00 1408.7 840 81.3
Sabra04G0148600 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1407.1 851 81.0
CANSAT64G0962 Cannabis sativa HOM05D003791 ORTHO05D004961 0.0e+00 1406.3 844 81.0
Potri.009G002400 Populus trichocarpa HOM05D003791 ORTHO05D004961 0.0e+00 1406.3 842 81.1
RcHm_v2.0_Chr5g0056311 Rosa chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1406.0 842 80.4
Prupe.6G114800 Prunus persica HOM05D003791 ORTHO05D004961 0.0e+00 1405.2 817 82.9
FAN21G3702 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1404.8 850 79.9
Lj3g0026116 Lotus japonicus HOM05D003791 ORTHO05D004961 0.0e+00 1404.4 841 80.6
TPR.G35046 Trifolium pratense HOM05D003791 ORTHO05D004961 0.0e+00 1402.1 843 80.0
FvH4_3g30370 Fragaria vesca HOM05D003791 ORTHO05D004961 0.0e+00 1401.3 850 79.9
FAN11G2854 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1400.6 850 79.8
FAN16G1431 Fragaria x ananassa HOM05D003791 ORTHO05D004961 0.0e+00 1400.2 850 79.6
Lalb_Chr22g0350471 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1399.8 826 81.5
Glyma.11G191000 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1397.1 841 80.9
CsaV3_1G014360 Cucumis sativus L. HOM05D003791 ORTHO05D004961 0.0e+00 1395.2 846 80.1
MELO3C004827.2 Cucumis melo HOM05D003791 ORTHO05D004961 0.0e+00 1394.8 846 80.0
CSS0049530 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1394.0 848 80.7
TAR623G0647 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1394.0 842 80.3
ECA233G0170 Erigeron canadensis HOM05D003791 ORTHO05D004961 0.0e+00 1392.1 844 80.0
CiPaw.14G105700 Carya illinoinensis HOM05D003791 ORTHO05D004961 0.0e+00 1391.3 843 79.8
HanXRQChr13g0403561 Helianthus annuus HOM05D003791 ORTHO05D004961 0.0e+00 1387.5 844 79.9
Ca_19327_v3 Cicer arietinum L. HOM05D003791 ORTHO05D004961 0.0e+00 1386.7 842 79.6
Psat7g191520 Pisum sativum HOM05D003791 ORTHO05D004961 0.0e+00 1386.7 828 80.4
Glyma.12G083300 Glycine max HOM05D003791 ORTHO05D004961 0.0e+00 1385.9 823 81.0
Duzib168G1694 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1382.9 841 79.9
Phvul.011G088100 Phaseolus vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1382.9 824 80.8
arahy.Tifrunner.gnm1.ann1.53PLGZ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1381.3 822 80.5
arahy.Tifrunner.gnm1.ann1.DSMN0K Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1380.9 822 80.5
DCAR_006140 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1380.5 842 77.8
Medtr4g056480 Medicago truncatula HOM05D003791 ORTHO05D004961 0.0e+00 1378.2 823 80.4
VMungo1127G0886 Vigna mungo HOM05D003791 ORTHO05D004961 0.0e+00 1377.5 824 80.8
Dinv29393 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1377.1 804 83.6
DCAR_018754 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1375.9 866 77.9
Sed0022437 Sechium edule HOM05D003791 ORTHO05D004961 0.0e+00 1374.0 846 79.2
unitig_22.g5654 Utricularia gibba HOM05D003791 ORTHO05D004961 0.0e+00 1374.0 848 78.4
TAR369G0287 Trochodendron aralioides HOM05D003791 ORTHO05D004961 0.0e+00 1369.8 823 81.7
MD03G1129800 Malus domestica HOM05D003791 ORTHO05D004961 0.0e+00 1367.4 842 79.1
Gorai.006G103500 Gossypium raimondii HOM05D003791 ORTHO05D004961 0.0e+00 1360.1 839 79.3
Aqoxy1G01033 Aquilegia oxysepala HOM05D003791 ORTHO05D004961 0.0e+00 1359.0 822 79.1
THA.LOC104800566 Tarenaya hassleriana HOM05D003791 ORTHO05D004961 0.0e+00 1358.6 819 79.4
vmacro03244 Vaccinium macrocarpon HOM05D003791 ORTHO05D004961 0.0e+00 1355.5 1068 66.2
Duzib170G1073 Durio zibethinus HOM05D003791 ORTHO05D004961 0.0e+00 1353.6 842 78.4
arahy.Tifrunner.gnm1.ann1.BYIB55 Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1347.4 814 79.6
Lsat_1_v5_gn_6_42140 Lactuca sativa HOM05D003791 ORTHO05D004961 0.0e+00 1344.7 824 79.6
C05p06320 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1343.2 841 77.9
BraA06t23732Z Brassica rapa HOM05D003791 ORTHO05D004961 0.0e+00 1341.6 854 77.0
A06p05250 Brassica napus HOM05D003791 ORTHO05D004961 0.0e+00 1340.9 829 78.8
Sabra09G0001100 Salix brachista HOM05D003791 ORTHO05D004961 0.0e+00 1340.9 871 75.8
Nitab4.5_0003470g0120 Nicotiana tabacum HOM05D003791 ORTHO05D004961 0.0e+00 1340.1 821 80.6
BolC5t29388H Brassica oleracea HOM05D003791 ORTHO05D004961 0.0e+00 1339.3 827 78.8
Thhalv10006697m.g Eutrema salsugineum HOM05D003791 ORTHO05D004961 0.0e+00 1339.3 850 77.1
PSO339G5439 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1333.2 823 77.3
Carub.0001s0755 Capsella rubella HOM05D003791 ORTHO05D004961 0.0e+00 1328.9 829 78.2
Sp1g06840 Schrenkiella parvula HOM05D003791 ORTHO05D004961 0.0e+00 1327.4 850 76.6
PSO063G7392 Papaver somniferum HOM05D003791 ORTHO05D004961 0.0e+00 1326.6 824 76.9
AT1G08190 Arabidopsis thaliana HOM05D003791 ORTHO05D004961 0.0e+00 1319.3 860 75.6
AL1G18600 Arabidopsis lyrata HOM05D003791 ORTHO05D004961 0.0e+00 1318.5 859 76.3
CARHR008020 Cardamine hirsuta HOM05D003791 ORTHO05D004961 0.0e+00 1314.7 846 76.2
Nn2g13909 Nelumbo nucifera HOM05D003791 ORTHO05D004961 0.0e+00 1308.5 822 76.9
Lalb_Chr03g0027821 Lupinus albus HOM05D003791 ORTHO05D004961 0.0e+00 1307.0 825 76.7
Aa31LG11G12710 Aethionema arabicum HOM05D003791 ORTHO05D004961 0.0e+00 1301.6 818 76.7
Hund00856 Selenicereus undatus HOM05D003791 ORTHO05D004961 0.0e+00 1287.7 842 72.8
ATR0580G402 Amborella trichopoda HOM05D003791 ORTHO05D004961 0.0e+00 1279.6 824 75.7
Peaxi162Scf00114g00310 Petunia axillaris HOM05D003791 ORTHO05D004961 0.0e+00 1274.6 843 75.6
arahy.Tifrunner.gnm1.ann1.EI6HBJ Arachis hypogaea HOM05D003791 ORTHO05D004961 0.0e+00 1262.7 814 75.6
CDE09G0630 Ceratophyllum demersum HOM05D003791 ORTHO05D004961 0.0e+00 1261.5 822 73.7
CSS0001832 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 0.0e+00 1251.9 724 84.8
EL10Ac9g20994 Beta vulgaris HOM05D003791 ORTHO05D004961 0.0e+00 1246.9 842 70.5
AUR62024040 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1236.9 842 70.5
Os04g0195000 Oryza sativa ssp. japonica HOM05D003791 ORTHO05D004961 0.0e+00 1224.2 828 70.5
Lj1A216G25 Lonicera japonica HOM05D003791 ORTHO05D004961 0.0e+00 1221.1 744 81.0
SHI06192 Sapria himalayana HOM05D003791 ORTHO05D004961 0.0e+00 1213.4 826 70.8
Sc21g0003980 Simmondsia chinensis HOM05D003791 ORTHO05D004961 0.0e+00 1191.0 696 82.2
SEGI_35272 Sequoiadendron giganteum HOM05D003791 ORTHO05D004961 0.0e+00 1149.0 846 66.0
Dinv12566 Davidia involucrata HOM05D003791 ORTHO05D004961 0.0e+00 1122.8 661 83.5
DCAR_015496 Daucus carota HOM05D003791 ORTHO05D004961 0.0e+00 1094.7 864 64.6
AUR62040426 Chenopodium quinoa HOM05D003791 ORTHO05D004961 0.0e+00 1091.6 697 73.9
Mapoly0052s0125 Marchantia polymorpha HOM05D003791 ORTHO05D004961 7.4e-300 1033.9 842 60.7
AagrBONN_evm.TU.Sc2ySwM_368.1978 Anthoceros agrestis HOM05D003791 ORTHO05D004961 1.5e-297 1026.2 861 58.0
Pp3c15_14510 Physcomitrium patens HOM05D003791 ORTHO05D004961 2.8e-291 1005.4 825 59.5
Ah.01g004870 Amaranthus hybridus HOM05D003791 ORTHO05D004961 1.0e-288 996.9 842 59.7
ClCG09G017560 Citrullus lanatus HOM05D003791 ORTHO05D004961 1.5e-281 973.0 636 75.5
HPP92_012850 Vanilla planifolia HOM05D003791 ORTHO05D004961 8.8e-269 930.6 577 76.9
SMO118G0273 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 2.5e-255 885.9 739 58.9
HPP92_012843 Vanilla planifolia HOM05D003791 ORTHO05D004961 2.4e-242 842.8 507 79.7
arahy.Tifrunner.gnm1.ann1.SF2S3L Arachis hypogaea HOM05D003791 ORTHO05D004961 7.0e-242 841.3 579 71.7
Nn6g35161 Nelumbo nucifera HOM05D003791 ORTHO05D004961 5.0e-240 835.1 511 79.1
QL01p014586 Quercus lobata HOM05D003791 ORTHO05D004961 5.2e-229 798.5 497 78.9
QL03p064651 Quercus lobata HOM05D003791 ORTHO05D004961 3.1e-221 772.7 572 68.9
FAN21G1169 Fragaria x ananassa HOM05D003791 ORTHO05D004961 2.3e-200 703.4 481 72.3
QL03p064641 Quercus lobata HOM05D003791 ORTHO05D004961 6.0e-185 652.1 346 89.3
Nn6g32817 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.6e-182 644.0 386 81.9
PRCOL_00006500 Prasinoderma coloniale HOM05D003791 ORTHO05D004961 2.9e-163 580.1 909 38.3
Nn6g35165 Nelumbo nucifera HOM05D003791 ORTHO05D004961 1.0e-155 555.1 312 83.3
Zm00001eb066510 Zea mays HOM05D003791 ORTHO05D004961 6.8e-144 515.8 363 66.4
Mapoly0052s0123 Marchantia polymorpha HOM05D003791 ORTHO05D004961 1.3e-123 448.4 368 61.4
MCO08G243 Micromonas commoda HOM05D003791 ORTHO05D004961 3.6e-121 440.3 765 35.9
Cpa.g.sc47.25 Carica papaya HOM05D003791 ORTHO05D004961 4.4e-119 433.3 480 51.7
Cpa.g.sc47.26 Carica papaya HOM05D003791 ORTHO05D004961 4.9e-118 429.9 223 91.0
TWI75G0171 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 2.4e-117 427.6 253 79.8
Zm00001eb043500 Zea mays HOM05D003791 ORTHO05D004961 4.7e-105 386.7 279 67.4
SMO266G0036 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 6.4e-102 376.3 804 31.8
Cre03.g209281 Chlamydomonas reinhardtii HOM05D003791 ORTHO05D004961 4.6e-100 370.2 1027 27.2
Zm00001eb057600 Zea mays HOM05D003791 ORTHO05D004961 8.4e-94 349.4 253 66.0
Zm00001eb364150 Zea mays HOM05D003791 ORTHO05D004961 8.4e-94 349.4 253 66.0
CBR_g63066 Chara braunii HOM05D003791 ORTHO05D000002 6.6e-91 339.7 365 46.0
ClCG00G003900 Citrullus lanatus HOM05D003791 ORTHO05D004961 5.8e-87 326.6 224 72.3
arahy.Tifrunner.gnm1.ann1.5PQ0NB Arachis hypogaea HOM05D003791 ORTHO05D004961 6.6e-83 313.2 246 65.9
DCAR_031428 Daucus carota HOM05D003791 ORTHO05D004961 2.1e-60 238.4 148 74.3
SMO297G0006 Selaginella moellendorffii HOM05D003791 ORTHO05D004961 3.9e-51 207.6 174 51.7
Zm00001eb157910 Zea mays HOM05D003791 ORTHO05D004961 2.8e-49 201.4 149 61.7
Zm00001eb222800 Zea mays HOM05D003791 ORTHO05D004961 2.8e-49 201.4 149 61.7
Zm00001eb291510 Zea mays HOM05D003791 ORTHO05D004961 1.3e-46 192.6 139 63.3
GSVIVG01024429001 Vitis vinifera HOM05D003791 ORTHO05D013423 2.3e-43 181.8 103 83.5
Ah.09g226470 Amaranthus hybridus HOM05D003791 ORTHO05D019539 1.3e-41 176.0 172 53.5
Nn2g15996 Nelumbo nucifera HOM05D003791 ORTHO05D004961 5.3e-40 170.6 117 68.4
Zm00001eb291520 Zea mays HOM05D003791 ORTHO05D004961 7.0e-40 170.2 99 79.8
FAN21G2323 Fragaria x ananassa HOM05D003791 ORTHO05D004961 2.7e-36 158.3 226 47.3
Oeu000610.1 Olea europaea HOM05D003791 ORTHO05D004961 6.1e-36 157.1 124 71.0
CSS0038043 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 1.4e-35 156.0 76 92.1
CSS0018078 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.0e-35 154.5 76 90.8
CSS0039906 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 5.2e-35 154.1 75 93.3
CSS0036642 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 2.6e-34 151.8 76 89.5
AUR62024999 Chenopodium quinoa HOM05D003791 ORTHO05D019539 1.3e-33 149.4 110 68.2
CSS0017290 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 3.7e-33 147.9 78 85.9
CSS0027626 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D004961 4.8e-33 147.5 74 90.5
AUR62024027 Chenopodium quinoa HOM05D003791 ORTHO05D000022 1.6e-31 142.5 96 72.9
DCAR_024781 Daucus carota HOM05D003791 ORTHO05D004961 2.5e-29 135.2 88 73.9
Ah.10g024760 Amaranthus hybridus HOM05D001024 ORTHO05D000878 3.2e-29 134.8 140 50.0
GSVIVG01004781001 Vitis vinifera HOM05D003791 ORTHO05D013423 3.6e-28 131.3 129 55.0
Nn2g15995 Nelumbo nucifera HOM05D003791 ORTHO05D004961 2.0e-26 125.6 65 90.8
Ah.13g066400 Amaranthus hybridus HOM05D003791 ORTHO05D019539 8.3e-25 120.2 116 53.4
CBR_g75953 Chara braunii HOM05D003791 ORTHO05D004961 5.5e-21 107.5 92 51.1
TWI75G0356 Tripterygium wilfordii HOM05D003791 ORTHO05D004961 1.2e-18 99.8 130 44.6
Cfa022812 Carpinus fangiana HOM05D003791 ORTHO05D123815 1.5e-18 99.4 290 25.9
Lj1C215T10 Lonicera japonica HOM05D003791 ORTHO05D019539 8.3e-17 93.6 94 52.1
AUR62040427 Chenopodium quinoa HOM05D003791 ORTHO05D019539 7.0e-16 90.5 100 45.0
RcHm_v2.0_Chr5g0056291 Rosa chinensis HOM05D003791 ORTHO05D004961 2.0e-15 89.0 87 51.7
GSVIVG01014936001 Vitis vinifera HOM05D003919 ORTHO05D004906 9.5e-13 80.1 56 66.1
PSO339G1674 Papaver somniferum HOM05D003791 ORTHO05D004961 2.9e-09 68.6 46 58.7
AagrBONN_evm.TU.Sc2ySwM_368.1888 Anthoceros agrestis HOM05D004575 ORTHO05D004251 1.8e-08 65.9 43 67.4
Pp3c9_21930 Physcomitrium patens HOM05D003791 ORTHO05D308914 5.4e-08 64.3 48 60.4
CSS0019611 Camellia sinensis var. sinensis HOM05D003791 ORTHO05D019539 9.2e-08 63.5 101 37.6


User provided reference genes

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