Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold65G22170 Striga asiatica HOM05D004484 ORTHO05D005370 5.7e-178 627.5 317 100.0
SGA_v2.0_scaffold29G12247 Striga asiatica HOM05D004484 ORTHO05D005370 3.3e-85 319.3 227 79.3
SGA_v2.0_scaffold10G05342 Striga asiatica HOM05D004484 ORTHO05D005370 7.6e-74 281.6 239 70.7
SGA_v2.0_scaffold172G39032 Striga asiatica HOM05D004484 ORTHO05D005370 1.0e-73 281.2 205 75.6
SGA_v2.0_scaffold153G37012 Striga asiatica HOM05D004484 ORTHO05D005370 5.7e-45 185.7 244 48.0
PGSC0003DMG400012761 Solanum tuberosum HOM05D004484 ORTHO05D005370 4.8e-36 156.0 201 44.3
Migut.B01635 Erythranthe guttata HOM05D004484 ORTHO05D005370 6.3e-36 155.6 237 43.5
Nitab4.5_0000457g0330 Nicotiana tabacum HOM05D004484 ORTHO05D005370 2.4e-35 153.7 201 43.8
CAN.G388.13 Capsicum annuum HOM05D004484 ORTHO05D005370 4.1e-35 152.9 201 42.8
Peaxi162Scf00021g01723 Petunia axillaris HOM05D004484 ORTHO05D005370 7.0e-35 152.1 201 41.8
MSTRG.20748 Avicennia marina HOM05D004484 ORTHO05D005370 9.1e-35 151.8 201 43.3
PSO478G5008 Papaver somniferum HOM05D004484 ORTHO05D005370 2.7e-34 150.2 201 43.8
MD07G1121000 Malus domestica HOM05D004484 ORTHO05D005370 4.5e-34 149.4 201 42.3
Cc02_g36700 Coffea canephora HOM05D004484 ORTHO05D005370 5.9e-34 149.1 201 43.3
Aqoxy5G00403 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 7.7e-34 148.7 201 42.3
Prupe.2G145600 Prunus persica HOM05D004484 ORTHO05D005370 7.7e-34 148.7 201 41.8
Solyc01g091350.4 Solanum lycopersicum HOM05D004484 ORTHO05D005370 7.7e-34 148.7 200 42.0
Dinv32377 Davidia involucrata HOM05D004484 ORTHO05D005370 1.0e-33 148.3 201 42.8
HanXRQChr16g0520161 Helianthus annuus HOM05D004484 ORTHO05D005370 1.0e-33 148.3 201 42.8
Lsat_1_v5_gn_4_43240 Lactuca sativa HOM05D004484 ORTHO05D005370 1.0e-33 148.3 201 42.8
SHI13523 Sapria himalayana HOM05D004484 ORTHO05D005370 1.0e-33 148.3 237 42.2
vmacro13399 Vaccinium macrocarpon HOM05D004484 ORTHO05D005370 1.3e-33 147.9 201 42.8
Sopen01g037090 Solanum pennellii HOM05D004484 ORTHO05D005370 1.7e-33 147.5 200 41.5
Oeu055487.1 Olea europaea HOM05D004484 ORTHO05D005370 2.2e-33 147.1 201 43.8
ECA234G1700 Erigeron canadensis HOM05D004484 ORTHO05D005370 2.9e-33 146.7 201 42.8
TWI23G0227 Tripterygium wilfordii HOM05D004484 ORTHO05D005370 2.9e-33 146.7 201 41.3
Cfa001721 Carpinus fangiana HOM05D004484 ORTHO05D005370 3.8e-33 146.4 201 41.3
Haze_16815 Corylus avellana HOM05D004484 ORTHO05D005370 3.8e-33 146.4 201 41.3
CANSAT56G1200 Cannabis sativa HOM05D004484 ORTHO05D005370 6.5e-33 145.6 226 39.4
CANSAT56G4533 Cannabis sativa HOM05D004484 ORTHO05D005370 6.5e-33 145.6 226 39.4
DCAR_015907 Daucus carota HOM05D004484 ORTHO05D005370 6.5e-33 145.6 232 40.1
Potri.014G069700 Populus trichocarpa HOM05D004484 ORTHO05D005370 6.5e-33 145.6 201 41.8
MBI12_g10758_MAGBIO Magnolia biondii HOM05D004484 ORTHO05D005370 8.5e-33 145.2 201 42.3
Nitab4.5_0005372g0070 Nicotiana tabacum HOM05D004484 ORTHO05D005370 8.5e-33 145.2 201 42.3
ClCG05G002220 Citrullus lanatus HOM05D004484 ORTHO05D005370 1.1e-32 144.8 201 41.8
Manes.01G265900 Manihot esculenta HOM05D004484 ORTHO05D005370 1.1e-32 144.8 201 40.3
CiPaw.01G262000 Carya illinoinensis HOM05D004484 ORTHO05D005370 1.5e-32 144.4 201 40.3
GSVIVG01027610001 Vitis vinifera HOM05D004484 ORTHO05D005370 1.5e-32 144.4 201 42.3
Lj7A528T57 Lonicera japonica HOM05D004484 ORTHO05D005370 4.2e-32 142.9 201 41.8
Sabra14G0049400 Salix brachista HOM05D004484 ORTHO05D005370 4.2e-32 142.9 201 40.3
Thecc.01G376200 Theobroma cacao HOM05D004484 ORTHO05D005370 5.5e-32 142.5 304 34.2
AUR62013627 Chenopodium quinoa HOM05D004484 ORTHO05D005370 7.2e-32 142.1 238 39.1
TAR629G2468 Trochodendron aralioides HOM05D004484 ORTHO05D005370 9.4e-32 141.7 201 40.3
Atru.chr5.309 Acer truncatum HOM05D004484 ORTHO05D005370 1.2e-31 141.4 244 37.3
MELO3C006188.2 Cucumis melo HOM05D004484 ORTHO05D005370 1.2e-31 141.4 201 41.3
Potri.002G148200 Populus trichocarpa HOM05D004484 ORTHO05D005370 1.2e-31 141.4 201 40.3
Hund27347 Selenicereus undatus HOM05D004484 ORTHO05D005370 1.6e-31 141.0 202 40.1
EL10Ac1g00900 Beta vulgaris HOM05D004484 ORTHO05D005370 2.1e-31 140.6 201 39.8
CDE04G3156 Ceratophyllum demersum HOM05D004484 ORTHO05D005370 2.1e-31 140.6 194 41.8
Ciclev10019016m.g Citrus clementina HOM05D004484 ORTHO05D005370 2.1e-31 140.6 201 40.3
unitig_749.g13780 Utricularia gibba HOM05D004484 ORTHO05D005370 2.1e-31 140.6 199 42.2
CSS0036976 Camellia sinensis var. sinensis HOM05D004484 ORTHO05D005370 2.7e-31 140.2 201 42.3
Sc02g0002590 Simmondsia chinensis HOM05D004484 ORTHO05D005370 4.7e-31 139.4 201 40.3
Hma1.2p1_0086F.1_g044870 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 6.1e-31 139.0 201 41.8
Hma1.2p1_0086F.1_g044880 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 6.1e-31 139.0 201 41.8
Sed0020955 Sechium edule HOM05D004484 ORTHO05D005370 6.1e-31 139.0 201 40.3
QL08p052472 Quercus lobata HOM05D004484 ORTHO05D005370 1.4e-30 137.9 201 39.3
Cpa.g.sc18.115 Carica papaya HOM05D004484 ORTHO05D005370 2.3e-30 137.1 201 41.3
Nn1g01233 Nelumbo nucifera HOM05D004484 ORTHO05D005370 2.3e-30 137.1 201 40.3
GSVIVG01027609001 Vitis vinifera HOM05D004484 ORTHO05D005370 2.3e-30 137.1 201 40.8
CsaV3_3G009680 Cucumis sativus L. HOM05D004484 ORTHO05D005370 3.0e-30 136.7 201 40.3
HPP92_027818 Vanilla planifolia HOM05D004484 ORTHO05D005370 3.0e-30 136.7 201 40.3
Zm00001eb064930 Zea mays HOM05D004484 ORTHO05D005370 3.0e-30 136.7 201 41.8
Eucgr.E01418 Eucalyptus grandis HOM05D004484 ORTHO05D005370 8.8e-30 135.2 201 39.3
FvH4_7g11900 Fragaria vesca HOM05D004484 ORTHO05D005370 8.8e-30 135.2 201 38.8
FAN06G1787 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.8e-30 135.2 201 38.8
FAN06G3319 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.8e-30 135.2 201 38.8
FAN10G1483 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.8e-30 135.2 201 38.8
FAN10G2369 Fragaria x ananassa HOM05D004484 ORTHO05D005370 8.8e-30 135.2 201 38.8
Lj9C569T11 Lonicera japonica HOM05D004484 ORTHO05D005370 1.5e-29 134.4 201 37.3
arahy.Tifrunner.gnm1.ann1.Q9SWB6 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.6e-29 133.7 342 32.7
FAN01G0628 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.6e-29 133.7 201 38.3
Ca_19886_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 3.4e-29 133.3 201 38.8
Aqoxy3G02138 Aquilegia oxysepala HOM05D004484 ORTHO05D005370 4.4e-29 132.9 239 36.4
ATR0049G077 Amborella trichopoda HOM05D004484 ORTHO05D005370 9.8e-29 131.7 199 39.7
arahy.Tifrunner.gnm1.ann1.6K85L9 Arachis hypogaea HOM05D004484 ORTHO05D005370 9.8e-29 131.7 236 37.7
arahy.Tifrunner.gnm1.ann1.HW1IVJ Arachis hypogaea HOM05D004484 ORTHO05D005370 9.8e-29 131.7 236 37.7
arahy.Tifrunner.gnm1.ann1.V1M046 Arachis hypogaea HOM05D004484 ORTHO05D005370 9.8e-29 131.7 236 37.7
AUR62004221 Chenopodium quinoa HOM05D004484 ORTHO05D005370 1.3e-28 131.3 230 37.8
TPR.G9845 Trifolium pratense HOM05D004484 ORTHO05D005370 1.3e-28 131.3 182 39.6
Medtr4g023560 Medicago truncatula HOM05D004484 ORTHO05D005370 2.8e-28 130.2 201 38.3
Psat7g233440 Pisum sativum HOM05D004484 ORTHO05D005370 3.7e-28 129.8 201 37.3
COL.COLO4_07018 Corchorus olitorius HOM05D004484 ORTHO05D005370 4.8e-28 129.4 205 37.6
Ah.13g073490 Amaranthus hybridus HOM05D004484 ORTHO05D005370 6.3e-28 129.0 201 36.8
THA.LOC104817247 Tarenaya hassleriana HOM05D004484 ORTHO05D005370 6.3e-28 129.0 278 33.8
Lj3g0013484 Lotus japonicus HOM05D004484 ORTHO05D005370 1.4e-27 127.9 201 37.8
PGR042G0667 Punica granatum HOM05D004484 ORTHO05D005370 2.4e-27 127.1 209 37.3
COL.COLO4_12548 Corchorus olitorius HOM05D004484 ORTHO05D005370 4.1e-27 126.3 139 46.8
Lalb_Chr13g0291731 Lupinus albus HOM05D004484 ORTHO05D005370 5.4e-27 125.9 232 34.1
Ca_27059_v3 Cicer arietinum L. HOM05D004484 ORTHO05D005370 1.6e-26 124.4 201 37.8
Glyma.05G125700 Glycine max HOM05D004484 ORTHO05D005370 1.6e-26 124.4 201 36.3
FAN03G1897 Fragaria x ananassa HOM05D004484 ORTHO05D005370 2.0e-26 124.0 250 33.2
arahy.Tifrunner.gnm1.ann1.5492A7 Arachis hypogaea HOM05D004484 ORTHO05D005370 2.7e-26 123.6 215 36.7
arahy.Tifrunner.gnm1.ann1.T9R8PC Arachis hypogaea HOM05D004484 ORTHO05D005370 2.7e-26 123.6 215 36.7
Lalb_Chr12g0208261 Lupinus albus HOM05D004484 ORTHO05D005370 5.9e-26 122.5 201 36.8
Gohir.A11G080700 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.3e-25 121.3 202 38.1
Gorai.007G091100 Gossypium raimondii HOM05D004484 ORTHO05D005370 1.3e-25 121.3 202 38.1
Gohir.D11G085300 Gossypium hirsutum HOM05D004484 ORTHO05D005370 1.7e-25 120.9 202 38.1
arahy.Tifrunner.gnm1.ann1.5WGS6V Arachis hypogaea HOM05D004484 ORTHO05D005370 1.1e-24 118.2 219 36.1
AT1G48050 Arabidopsis thaliana HOM05D004484 ORTHO05D005370 2.1e-23 114.0 201 34.3
CARHR037700 Cardamine hirsuta HOM05D004484 ORTHO05D005370 2.8e-23 113.6 201 34.3
arahy.Tifrunner.gnm1.ann1.03ZR4A Arachis hypogaea HOM05D004484 ORTHO05D005370 3.6e-23 113.2 199 35.7
A08p05330 Brassica napus HOM05D004484 ORTHO05D005370 4.7e-23 112.8 201 33.3
BraSC267t45947Z Brassica rapa HOM05D004484 ORTHO05D005370 4.7e-23 112.8 201 33.3
Carub.0001s3716 Capsella rubella HOM05D004484 ORTHO05D005370 4.7e-23 112.8 201 33.3
Sp1g35020 Schrenkiella parvula HOM05D004484 ORTHO05D005370 8.0e-23 112.1 201 33.3
VMungo0251G1206 Vigna mungo HOM05D004484 ORTHO05D005370 8.0e-23 112.1 237 32.9
BcaB04g17469 Brassica carinata HOM05D004484 ORTHO05D005370 1.0e-22 111.7 201 32.8
BcaC07g37180 Brassica carinata HOM05D004484 ORTHO05D005370 1.0e-22 111.7 201 32.8
C08p05620 Brassica napus HOM05D004484 ORTHO05D005370 1.0e-22 111.7 201 32.8
BolC8t47375H Brassica oleracea HOM05D004484 ORTHO05D005370 1.0e-22 111.7 201 32.8
Phvul.002G205800 Phaseolus vulgaris HOM05D004484 ORTHO05D005370 3.0e-22 110.2 202 35.1
AL1G54570 Arabidopsis lyrata HOM05D004484 ORTHO05D005370 8.8e-22 108.6 201 32.8
Aa31LG10G5650 Aethionema arabicum HOM05D004484 ORTHO05D005370 1.3e-20 104.8 201 32.3
PGR119G1536 Punica granatum HOM05D004484 ORTHO05D005370 3.7e-20 103.2 197 32.0
Hma1.2p1_0170F.1_g075250 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 1.8e-19 100.9 131 48.9
SHI38996 Sapria himalayana HOM05D004484 ORTHO05D005370 5.4e-19 99.4 171 36.8
RcHm_v2.0_Chr1g0350581 Rosa chinensis HOM05D004484 ORTHO05D005370 5.0e-17 92.8 64 65.6
Pp3c22_11100 Physcomitrium patens HOM05D004484 ORTHO05D005370 4.3e-16 89.7 201 31.8
Mapoly0129s0012 Marchantia polymorpha HOM05D004484 ORTHO05D005370 7.3e-16 89.0 273 31.1
SHI38095 Sapria himalayana HOM05D004484 ORTHO05D005370 3.6e-15 86.7 64 64.1
SMO367G0514 Selaginella moellendorffii HOM05D004484 ORTHO05D005370 4.7e-15 86.3 248 29.0
Glyma.06G243967 Glycine max HOM05D004484 ORTHO05D005370 1.4e-14 84.7 63 57.1
CBR_g30081 Chara braunii HOM05D004484 ORTHO05D005370 7.5e-13 79.0 244 25.0
SGA_v2.0_scaffold61G21245 Striga asiatica HOM05D000036 ORTHO05D010104 2.9e-12 77.0 44 84.1
RcHm_v2.0_Chr1g0350571 Rosa chinensis HOM05D004484 ORTHO05D005370 2.4e-11 73.9 91 48.4
CAN.G321.48 Capsicum annuum HOM05D001267 ORTHO05D002376 5.4e-11 72.8 54 64.8
Eucgr.I00725 Eucalyptus grandis HOM05D004484 ORTHO05D005370 3.5e-10 70.1 58 60.3
Thhalv10011351m.g Eutrema salsugineum HOM05D004484 ORTHO05D005370 4.6e-10 69.7 55 60.0
AagrBONN_evm.TU.Sc2ySwM_368.3373 Anthoceros agrestis HOM05D004484 ORTHO05D005370 3.0e-09 67.0 244 27.5
Hma1.2p1_0701F.1_g205850 Hydrangea macrophylla HOM05D004484 ORTHO05D005370 3.9e-09 66.6 150 36.7
CAN.G594.7 Capsicum annuum HOM05D004484 ORTHO05D005370 5.0e-09 66.2 53 62.3
SEGI_29754 Sequoiadendron giganteum HOM05D004484 ORTHO05D005370 5.6e-08 62.8 53 58.5
Carub.0004s0917 Capsella rubella HOM05D004484 ORTHO05D005370 2.3e-06 57.4 52 50.0


User provided reference genes

Program Settings