Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 1.5e-140 503.1 288 100.0
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 9.2e-127 457.2 288 91.0
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 1.6e-118 429.9 286 86.7
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 7.3e-116 421.0 288 83.0
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 8.4e-112 407.5 289 81.0
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 3.0e-109 399.1 289 79.6
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 1.9e-108 396.4 289 77.9
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 8.1e-107 391.0 305 71.1
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 4.0e-106 388.7 296 76.4
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 3.4e-105 385.6 288 74.0
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 3.8e-104 382.1 289 76.5
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 6.4e-104 381.3 288 73.3
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 4.2e-103 378.6 288 74.3
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 5.4e-103 378.3 288 72.9
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 9.3e-103 377.5 289 75.1
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 9.3e-103 377.5 288 71.5
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 9.3e-103 377.5 288 71.5
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 9.3e-103 377.5 288 72.9
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 9.3e-103 377.5 288 71.9
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 2.1e-102 376.3 287 72.1
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 3.5e-102 375.6 289 72.0
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 4.6e-102 375.2 286 71.3
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 4.6e-102 375.2 308 71.4
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 2.3e-101 372.9 289 73.4
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 2.3e-101 372.9 288 70.5
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 3.0e-101 372.5 289 73.4
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 3.9e-101 372.1 287 75.3
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 1.1e-100 370.5 289 73.7
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 4.3e-100 368.6 289 73.7
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 7.4e-100 367.9 287 73.2
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 7.4e-100 367.9 288 75.7
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 9.6e-100 367.5 288 73.3
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 1.3e-99 367.1 289 73.7
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 1.6e-99 366.7 290 71.0
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 3.6e-99 365.5 288 70.5
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 1.1e-98 364.0 288 70.1
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 2.4e-98 362.8 289 74.7
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 2.4e-98 362.8 289 70.9
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 6.9e-98 361.3 288 73.6
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 6.9e-98 361.3 280 72.5
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 9.0e-98 360.9 288 74.3
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 1.2e-97 360.5 289 75.1
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 1.5e-97 360.1 289 69.9
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 2.6e-97 359.4 281 74.4
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 2.6e-97 359.4 289 70.2
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 4.5e-97 358.6 267 72.3
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 4.9e-96 355.1 288 73.6
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 1.4e-95 353.6 286 67.1
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 3.2e-95 352.4 289 69.6
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 7.1e-95 351.3 280 70.4
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 9.3e-95 350.9 276 72.5
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 2.7e-94 349.4 288 67.4
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 3.5e-94 349.0 286 70.6
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 3.5e-94 349.0 288 67.4
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 7.9e-94 347.8 288 66.7
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 7.9e-94 347.8 289 68.5
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 3.0e-93 345.9 288 69.4
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 6.7e-93 344.7 288 69.4
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 8.7e-93 344.4 289 68.5
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 8.7e-93 344.4 277 71.1
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 1.5e-92 343.6 287 73.2
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 2.5e-92 342.8 286 69.2
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 3.3e-92 342.4 294 69.7
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 3.3e-92 342.4 302 64.6
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 4.3e-92 342.0 289 73.0
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 4.3e-92 342.0 256 71.5
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 4.3e-92 342.0 290 71.4
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 1.6e-91 340.1 316 66.5
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 4.8e-91 338.6 278 70.1
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 8.1e-91 337.8 268 70.1
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 4.0e-90 335.5 289 67.8
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 5.3e-90 335.1 242 76.4
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 6.9e-90 334.7 290 67.6
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.5e-89 333.6 279 65.9
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 2.0e-89 333.2 296 65.2
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 3.4e-89 332.4 251 72.5
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 4.5e-89 332.0 279 66.7
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 1.3e-88 330.5 285 68.4
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 3.8e-88 328.9 288 66.3
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 3.8e-88 328.9 288 66.7
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 6.5e-88 328.2 252 73.0
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 4.2e-87 325.5 251 71.7
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 5.5e-87 325.1 274 65.3
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 9.3e-87 324.3 252 72.2
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 9.3e-87 324.3 262 67.9
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 1.6e-86 323.6 252 72.6
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 2.1e-86 323.2 252 69.8
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 2.1e-86 323.2 252 69.8
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 2.7e-86 322.8 252 69.0
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 3.5e-86 322.4 252 72.2
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 4.6e-86 322.0 261 67.8
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 7.9e-86 321.2 252 69.0
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 1.0e-85 320.9 286 67.5
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 1.3e-85 320.5 263 68.8
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 1.3e-85 320.5 263 68.8
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 1.8e-85 320.1 252 72.2
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 6.7e-85 318.2 263 68.1
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 6.7e-85 318.2 263 68.1
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 6.7e-85 318.2 268 67.2
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 1.1e-84 317.4 288 64.6
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 1.1e-84 317.4 243 71.2
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 1.3e-83 313.9 289 65.1
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 3.1e-82 309.3 260 68.8
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 1.1e-79 300.8 243 67.9
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 5.5e-79 298.5 261 70.1
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 1.0e-77 294.3 253 65.2
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 5.1e-77 292.0 211 80.6
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 1.4e-74 283.9 246 67.5
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 2.4e-74 283.1 261 64.8
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 2.6e-73 279.6 293 58.0
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 3.6e-70 269.2 289 59.9
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.3e-67 260.8 293 59.0
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 6.3e-67 258.5 291 55.0
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.2e-65 254.2 293 54.3
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 1.3e-64 250.8 229 66.4
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 2.2e-64 250.0 153 86.3
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 2.9e-64 249.6 153 87.6
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 5.0e-56 222.2 243 57.6
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 2.2e-51 206.8 269 47.6
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 4.5e-49 199.1 289 48.1
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 1.7e-48 197.2 216 51.4
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 1.9e-47 193.7 179 64.2
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 5.5e-47 192.2 181 58.6
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 1.2e-46 191.0 125 79.2
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 7.5e-44 181.8 153 67.3
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 4.5e-41 172.6 153 61.4
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 5.7e-36 155.6 181 51.9
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 8.3e-35 151.8 187 50.8
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 4.5e-33 146.0 181 49.2
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 4.0e-29 132.9 236 38.6
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 1.7e-27 127.5 67 88.1
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.4e-26 124.4 105 60.0
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 1.1e-23 114.8 142 54.9
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 8.9e-21 105.1 136 55.1
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 6.4e-19 99.0 137 56.2
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 1.7e-16 90.9 105 54.3
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 3.1e-13 80.1 65 60.0
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 4.0e-13 79.7 73 60.3
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 1.1e-10 71.6 42 76.2
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 3.3e-07 60.1 48 62.5
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 2.1e-06 57.4 172 28.5


User provided reference genes

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