Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold59G20765 Striga asiatica HOM05D000688 ORTHO05D051402 1.2e-67 259.6 127 100.0
SGA_v2.0_scaffold4G02180 Striga asiatica HOM05D000688 ORTHO05D004737 3.1e-26 122.1 69 85.5
SGA_v2.0_scaffold59G20764 Striga asiatica HOM05D000688 ORTHO05D051402 2.3e-21 105.9 54 94.4
SGA_v2.0_scaffold169G38607 Striga asiatica HOM05D000688 ORTHO05D004737 1.3e-19 100.1 64 71.9
Duzib168G0339 Durio zibethinus HOM05D000688 ORTHO05D004737 2.2e-16 89.4 69 62.3
Rhsim02G0213200 Rhododendron simsii HOM05D000688 ORTHO05D004737 3.8e-16 88.6 69 60.9
Migut.E01463 Erythranthe guttata HOM05D000688 ORTHO05D004737 5.0e-16 88.2 69 60.9
vmacro11243 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 8.5e-16 87.4 69 60.9
vmacro13779 Vaccinium macrocarpon HOM05D000688 ORTHO05D004737 8.5e-16 87.4 69 60.9
Lsat_1_v5_gn_2_114740 Lactuca sativa HOM05D000688 ORTHO05D004737 1.1e-15 87.0 69 60.9
Actinidia10520 Actinidia chinensis HOM05D000688 ORTHO05D004737 1.4e-15 86.7 69 60.9
Potri.018G019100 Populus trichocarpa HOM05D000688 ORTHO05D004737 1.4e-15 86.7 69 60.9
SalBow6G0619 Salvia bowleyana HOM05D000688 ORTHO05D004737 1.4e-15 86.7 69 58.0
SalBow6G4737 Salvia bowleyana HOM05D000688 ORTHO05D004737 1.4e-15 86.7 69 58.0
Cc01_g06880 Coffea canephora HOM05D000688 ORTHO05D004737 1.9e-15 86.3 69 59.4
Cc08_g05510 Coffea canephora HOM05D000688 ORTHO05D004737 2.5e-15 85.9 69 59.4
HanXRQChr01g0011481 Helianthus annuus HOM05D000688 ORTHO05D004737 2.5e-15 85.9 69 62.3
HanXRQChr11g0320381 Helianthus annuus HOM05D000688 ORTHO05D004737 2.5e-15 85.9 69 58.0
Sed0003356 Sechium edule HOM05D000688 ORTHO05D004737 2.5e-15 85.9 69 59.4
CAN.G1269.4 Capsicum annuum HOM05D000688 ORTHO05D004737 3.2e-15 85.5 69 59.4
Lj7C733G5 Lonicera japonica HOM05D000688 ORTHO05D004737 3.2e-15 85.5 69 58.0
Nitab4.5_0001033g0090 Nicotiana tabacum HOM05D000688 ORTHO05D004737 3.2e-15 85.5 69 59.4
Peaxi162Scf00408g00711 Petunia axillaris HOM05D000688 ORTHO05D004737 3.2e-15 85.5 69 59.4
PGR142G2531 Punica granatum HOM05D000688 ORTHO05D004737 3.2e-15 85.5 69 59.4
PGR142G3000 Punica granatum HOM05D000688 ORTHO05D004737 3.2e-15 85.5 69 59.4
Thecc.09G016000 Theobroma cacao HOM05D000688 ORTHO05D004737 3.2e-15 85.5 69 59.4
CAN.G352.64 Capsicum annuum HOM05D000688 ORTHO05D004737 4.2e-15 85.1 69 59.4
AUR62009365 Chenopodium quinoa HOM05D000688 ORTHO05D004737 4.2e-15 85.1 69 58.0
AUR62023046 Chenopodium quinoa HOM05D000688 ORTHO05D004737 4.2e-15 85.1 69 58.0
CSS0050165 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 5.5e-15 84.7 69 58.0
ClCG05G016300 Citrullus lanatus HOM05D000688 ORTHO05D004737 5.5e-15 84.7 69 58.0
Dinv03974 Davidia involucrata HOM05D000688 ORTHO05D004737 5.5e-15 84.7 69 56.5
Dinv40966 Davidia involucrata HOM05D000688 ORTHO05D004737 5.5e-15 84.7 69 56.5
PGSC0003DMG400030880 Solanum tuberosum HOM05D000688 ORTHO05D004737 5.5e-15 84.7 69 59.4
CSS0012771 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 7.2e-15 84.3 69 58.0
CSS0012935 Camellia sinensis var. sinensis HOM05D000688 ORTHO05D004737 7.2e-15 84.3 69 58.0
COL.COLO4_29107 Corchorus olitorius HOM05D000688 ORTHO05D004737 7.2e-15 84.3 69 59.4
Hma1.2p1_2081F.1_g313530 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 7.2e-15 84.3 69 58.0
Hma1.2p1_2362F.1_g320630 Hydrangea macrophylla HOM05D000688 ORTHO05D004737 7.2e-15 84.3 69 58.0
TPR.G1854 Trifolium pratense HOM05D000688 ORTHO05D004737 7.2e-15 84.3 69 55.1
TAR624G0960 Trochodendron aralioides HOM05D000688 ORTHO05D004737 7.2e-15 84.3 69 62.3
unitig_8.g3063 Utricularia gibba HOM05D000688 ORTHO05D004737 7.2e-15 84.3 69 55.1
Ah.16g104830 Amaranthus hybridus HOM05D000688 ORTHO05D004737 9.4e-15 84.0 69 56.5
Lsat_1_v5_gn_9_69261 Lactuca sativa HOM05D000688 ORTHO05D004737 9.4e-15 84.0 69 56.5
Nitab4.5_0006627g0050 Nicotiana tabacum HOM05D000688 ORTHO05D004737 9.4e-15 84.0 69 60.9
Peaxi162Scf00053g00812 Petunia axillaris HOM05D000688 ORTHO05D004737 9.4e-15 84.0 69 59.4
QL02p018902 Quercus lobata HOM05D000688 ORTHO05D004737 9.4e-15 84.0 69 56.5
Ciclev10018562m.g Citrus clementina HOM05D000688 ORTHO05D004737 1.2e-14 83.6 69 56.5
COL.COLO4_35449 Corchorus olitorius HOM05D000688 ORTHO05D004737 1.2e-14 83.6 69 59.4
ECA238G1344 Erigeron canadensis HOM05D000688 ORTHO05D004737 1.2e-14 83.6 69 63.8
MD15G1040100 Malus domestica HOM05D000688 ORTHO05D004737 1.2e-14 83.6 69 58.0
Solyc03g110880.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 1.2e-14 83.6 69 58.0
Sopen03g030070 Solanum pennellii HOM05D000688 ORTHO05D004737 1.2e-14 83.6 69 58.0
DCAR_022858 Daucus carota HOM05D000688 ORTHO05D004737 1.6e-14 83.2 69 60.9
Nn1g00540 Nelumbo nucifera HOM05D000688 ORTHO05D004737 1.6e-14 83.2 69 55.1
Hund19557 Selenicereus undatus HOM05D000688 ORTHO05D004737 1.6e-14 83.2 69 55.1
CANSAT25G1723 Cannabis sativa HOM05D000688 ORTHO05D004737 2.1e-14 82.8 69 56.5
CsaV3_4G036560 Cucumis sativus L. HOM05D000688 ORTHO05D004737 2.1e-14 82.8 69 56.5
Medtr3g105990 Medicago truncatula HOM05D000688 ORTHO05D004737 2.1e-14 82.8 69 53.6
Psat5g032960 Pisum sativum HOM05D000688 ORTHO05D004737 2.1e-14 82.8 69 53.6
MSTRG.1633 Avicennia marina HOM05D000688 ORTHO05D004737 2.7e-14 82.4 69 56.5
Gohir.A07G032700 Gossypium hirsutum HOM05D000688 ORTHO05D004737 2.7e-14 82.4 69 56.5
Gohir.D07G036000 Gossypium hirsutum HOM05D000688 ORTHO05D004737 2.7e-14 82.4 69 56.5
Gorai.001G037900 Gossypium raimondii HOM05D000688 ORTHO05D004737 2.7e-14 82.4 69 56.5
GSVIVG01035963001 Vitis vinifera HOM05D000688 ORTHO05D004737 2.7e-14 82.4 69 56.5
COL.COLO4_18947 Corchorus olitorius HOM05D000688 ORTHO05D004737 4.6e-14 81.6 69 58.0
MELO3C016960.2 Cucumis melo HOM05D000688 ORTHO05D004737 4.6e-14 81.6 69 56.5
Eucgr.C00069 Eucalyptus grandis HOM05D000688 ORTHO05D004737 4.6e-14 81.6 69 56.5
HanXRQChr15g0484591 Helianthus annuus HOM05D000688 ORTHO05D004737 4.6e-14 81.6 69 56.5
Phvul.009G087100 Phaseolus vulgaris HOM05D000688 ORTHO05D004737 4.6e-14 81.6 69 53.6
Sopen08g024590 Solanum pennellii HOM05D000688 ORTHO05D004737 4.6e-14 81.6 69 58.0
DCAR_009948 Daucus carota HOM05D000688 ORTHO05D004737 6.1e-14 81.3 69 58.0
ECA232G0687 Erigeron canadensis HOM05D000688 ORTHO05D004737 6.1e-14 81.3 69 52.2
Manes.03G009000 Manihot esculenta HOM05D000688 ORTHO05D004737 6.1e-14 81.3 69 55.1
Os04g0641000 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 6.1e-14 81.3 69 55.1
AUR62020625 Chenopodium quinoa HOM05D000688 ORTHO05D004737 7.9e-14 80.9 69 53.6
Haze_21420 Corylus avellana HOM05D000688 ORTHO05D004737 7.9e-14 80.9 69 53.6
Lj1g0018077 Lotus japonicus HOM05D000688 ORTHO05D004737 7.9e-14 80.9 69 53.6
MD08G1057300 Malus domestica HOM05D000688 ORTHO05D004737 7.9e-14 80.9 69 56.5
THA.LOC104812243 Tarenaya hassleriana HOM05D000688 ORTHO05D004737 7.9e-14 80.9 69 56.5
Aqoxy2G03035 Aquilegia oxysepala HOM05D000688 ORTHO05D004737 1.0e-13 80.5 69 55.1
EL10Ac2g04112 Beta vulgaris HOM05D000688 ORTHO05D004737 1.0e-13 80.5 69 53.6
CiPaw.07G230000 Carya illinoinensis HOM05D000688 ORTHO05D004737 1.0e-13 80.5 69 53.6
Ca_15777_v3 Cicer arietinum L. HOM05D000688 ORTHO05D004737 1.0e-13 80.5 69 53.6
TWI63G0903 Tripterygium wilfordii HOM05D000688 ORTHO05D004737 1.0e-13 80.5 69 55.1
PSO017G0269 Papaver somniferum HOM05D000688 ORTHO05D004737 1.4e-13 80.1 69 58.0
Solyc08g075940.4 Solanum lycopersicum HOM05D000688 ORTHO05D004737 1.4e-13 80.1 69 56.5
AUR62038757 Chenopodium quinoa HOM05D000688 ORTHO05D004737 1.8e-13 79.7 69 55.1
Lalb_Chr23g0268231 Lupinus albus HOM05D000688 ORTHO05D004737 2.3e-13 79.3 69 52.2
PSO478G0475 Papaver somniferum HOM05D000688 ORTHO05D004737 2.3e-13 79.3 69 56.5
Prupe.1G393500 Prunus persica HOM05D000688 ORTHO05D004737 2.3e-13 79.3 69 53.6
Glyma.04G061000 Glycine max HOM05D000688 ORTHO05D004737 3.9e-13 78.6 69 50.7
Glyma.06G061600 Glycine max HOM05D000688 ORTHO05D004737 3.9e-13 78.6 69 50.7
Lalb_Chr08g0244431 Lupinus albus HOM05D000688 ORTHO05D004737 3.9e-13 78.6 69 50.7
SHI21063 Sapria himalayana HOM05D000688 ORTHO05D004737 3.9e-13 78.6 69 58.0
VMungo1309G2219 Vigna mungo HOM05D000688 ORTHO05D004737 3.9e-13 78.6 69 53.6
Lj8A737G24 Lonicera japonica HOM05D000688 ORTHO05D004737 8.8e-13 77.4 69 52.2
A05p31700 Brassica napus HOM05D000688 ORTHO05D004737 1.1e-12 77.0 69 53.6
C05p48100 Brassica napus HOM05D000688 ORTHO05D004737 1.1e-12 77.0 69 53.6
BolC5t33520H Brassica oleracea HOM05D000688 ORTHO05D004737 1.1e-12 77.0 69 53.6
BraA05t22003Z Brassica rapa HOM05D000688 ORTHO05D004737 1.1e-12 77.0 69 53.6
Cpa.g.sc127.33 Carica papaya HOM05D000688 ORTHO05D004737 1.1e-12 77.0 69 50.7
Manes.16G129400 Manihot esculenta HOM05D000688 ORTHO05D004737 1.1e-12 77.0 69 56.5
Sp3g16210 Schrenkiella parvula HOM05D000688 ORTHO05D004737 1.5e-12 76.6 69 52.2
Aa31LG8G4940 Aethionema arabicum HOM05D000688 ORTHO05D004737 1.9e-12 76.3 69 52.2
AL3G31250 Arabidopsis lyrata HOM05D000688 ORTHO05D004737 1.9e-12 76.3 69 50.7
AT3G18090 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 1.9e-12 76.3 69 50.7
arahy.Tifrunner.gnm1.ann1.35ZHP3 Arachis hypogaea HOM05D000688 ORTHO05D004737 2.5e-12 75.9 69 50.7
arahy.Tifrunner.gnm1.ann1.QT4Q57 Arachis hypogaea HOM05D000688 ORTHO05D004737 2.5e-12 75.9 69 50.7
Ah.10g035680 Amaranthus hybridus HOM05D000688 ORTHO05D004737 3.3e-12 75.5 69 53.6
AT3G23780 Arabidopsis thaliana HOM05D000688 ORTHO05D004737 3.3e-12 75.5 69 50.7
BolC5t33527H Brassica oleracea HOM05D000688 ORTHO05D004737 3.3e-12 75.5 69 52.2
Sc09g0010620 Simmondsia chinensis HOM05D000688 ORTHO05D004737 3.3e-12 75.5 69 47.8
BcaC05g28676 Brassica carinata HOM05D000688 ORTHO05D004737 4.3e-12 75.1 69 52.2
Zm00001eb068960 Zea mays HOM05D000688 ORTHO05D004737 4.3e-12 75.1 69 55.1
Carub.0003s1782 Capsella rubella HOM05D000688 ORTHO05D004737 5.7e-12 74.7 69 47.8
FvH4_1g06870 Fragaria vesca HOM05D000688 ORTHO05D004737 5.7e-12 74.7 69 52.2
FAN19G0885 Fragaria x ananassa HOM05D000688 ORTHO05D004737 5.7e-12 74.7 69 52.2
FAN23G1159 Fragaria x ananassa HOM05D000688 ORTHO05D004737 5.7e-12 74.7 69 52.2
FAN26G2550 Fragaria x ananassa HOM05D000688 ORTHO05D004737 5.7e-12 74.7 69 52.2
FAN26G3128 Fragaria x ananassa HOM05D000688 ORTHO05D004737 5.7e-12 74.7 69 52.2
FAN28G1036 Fragaria x ananassa HOM05D000688 ORTHO05D004737 5.7e-12 74.7 69 52.2
MBI05_g00401_MAGBIO Magnolia biondii HOM05D000688 ORTHO05D004737 5.7e-12 74.7 69 53.6
Zm00001eb431870 Zea mays HOM05D000688 ORTHO05D004737 5.7e-12 74.7 69 53.6
CARHR094240 Cardamine hirsuta HOM05D000688 ORTHO05D004737 7.4e-12 74.3 69 49.3
DCAR_003109 Daucus carota HOM05D000688 ORTHO05D004737 7.4e-12 74.3 69 50.7
Thhalv10019931m.g Eutrema salsugineum HOM05D000688 ORTHO05D004737 1.7e-11 73.2 69 50.7
Aqoxy5G02323 Aquilegia oxysepala HOM05D000688 ORTHO05D004737 2.2e-11 72.8 69 50.7
RcHm_v2.0_Chr2g0092681 Rosa chinensis HOM05D000688 ORTHO05D004737 2.2e-11 72.8 69 50.7
RcHm_v2.0_Chr5g0042281 Rosa chinensis HOM05D000688 ORTHO05D004737 8.2e-11 70.9 66 50.0
CDE08G0368 Ceratophyllum demersum HOM05D000688 ORTHO05D004737 2.6e-09 65.9 59 50.8
Zm00001eb415030 Zea mays HOM05D000688 ORTHO05D004737 1.0e-08 63.9 69 47.8
Os08g0171600 Oryza sativa ssp. japonica HOM05D000688 ORTHO05D004737 1.4e-07 60.1 67 44.8
ATR0564G243 Amborella trichopoda HOM05D000688 ORTHO05D004737 4.2e-07 58.5 69 40.6


User provided reference genes

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