Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold310G48206 Striga asiatica HOM05D006044 ORTHO05D007653 4.0e-66 254.6 128 100.0
SGA_v2.0_scaffold3G01443 Striga asiatica HOM05D006044 ORTHO05D007653 4.0e-66 254.6 128 100.0
unitig_27.g25012 Utricularia gibba HOM05D006044 ORTHO05D007653 4.5e-65 251.1 128 97.7
Migut.N02377 Erythranthe guttata HOM05D006044 ORTHO05D007653 4.2e-63 244.6 129 95.3
unitig_699.g19149 Utricularia gibba HOM05D006044 ORTHO05D007653 5.4e-63 244.2 128 96.9
Oeu032567.1 Olea europaea HOM05D006044 ORTHO05D007653 1.6e-62 242.7 128 93.8
SalBow8G2527 Salvia bowleyana HOM05D006044 ORTHO05D007653 4.3e-60 234.6 119 96.6
Cc03_g11600 Coffea canephora HOM05D006044 ORTHO05D007653 7.4e-60 233.8 128 92.2
Nitab4.5_0000069g0030 Nicotiana tabacum HOM05D006044 ORTHO05D007653 9.6e-60 233.4 128 91.4
Nitab4.5_0011609g0020 Nicotiana tabacum HOM05D006044 ORTHO05D007653 9.6e-60 233.4 128 91.4
SalBow1G1993 Salvia bowleyana HOM05D006044 ORTHO05D000010 1.6e-59 232.6 118 96.6
Peaxi162Scf00021g02522 Petunia axillaris HOM05D006044 ORTHO05D007653 3.7e-59 231.5 128 91.4
Prupe.1G025000 Prunus persica HOM05D006044 ORTHO05D007653 4.8e-59 231.1 128 91.4
RcHm_v2.0_Chr4g0388901 Rosa chinensis HOM05D006044 ORTHO05D007653 4.8e-59 231.1 128 90.6
arahy.Tifrunner.gnm1.ann1.6RB8S0 Arachis hypogaea HOM05D006044 ORTHO05D007653 8.1e-59 230.3 128 90.6
arahy.Tifrunner.gnm1.ann1.L4QR06 Arachis hypogaea HOM05D006044 ORTHO05D007653 8.1e-59 230.3 128 90.6
Glyma.02G278800 Glycine max HOM05D006044 ORTHO05D007653 1.8e-58 229.2 128 89.8
Phvul.008G202000 Phaseolus vulgaris HOM05D006044 ORTHO05D007653 1.8e-58 229.2 128 89.8
Solyc01g008360.3 Solanum lycopersicum HOM05D006044 ORTHO05D007653 1.8e-58 229.2 128 92.2
Sopen01g003880 Solanum pennellii HOM05D006044 ORTHO05D007653 1.8e-58 229.2 128 92.2
PGSC0003DMG400016393 Solanum tuberosum HOM05D006044 ORTHO05D007653 1.8e-58 229.2 128 92.2
VMungo0647G0704 Vigna mungo HOM05D006044 ORTHO05D007653 1.8e-58 229.2 128 89.8
FvH4_4g01940 Fragaria vesca HOM05D006044 ORTHO05D007653 2.4e-58 228.8 128 89.1
FAN12G1761 Fragaria x ananassa HOM05D006044 ORTHO05D007653 2.4e-58 228.8 128 89.1
FAN22G1152 Fragaria x ananassa HOM05D006044 ORTHO05D007653 2.4e-58 228.8 128 89.1
Glyma.14G035900 Glycine max HOM05D006044 ORTHO05D007653 2.4e-58 228.8 128 89.1
Manes.01G177500 Manihot esculenta HOM05D006044 ORTHO05D007653 3.1e-58 228.4 128 89.8
Hma1.2p1_0214F.1_g090800 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 4.0e-58 228.0 128 90.6
TPR.G16400 Trifolium pratense HOM05D006044 ORTHO05D007653 4.0e-58 228.0 125 88.8
Lalb_Chr10g0106211 Lupinus albus HOM05D006044 ORTHO05D007653 6.9e-58 227.3 128 89.1
Lalb_Chr17g0347851 Lupinus albus HOM05D006044 ORTHO05D007653 6.9e-58 227.3 128 89.1
HanXRQChr07g0196181 Helianthus annuus HOM05D006044 ORTHO05D007653 9.0e-58 226.9 119 93.3
Cpa.g.sc157.53 Carica papaya HOM05D006044 ORTHO05D007653 1.2e-57 226.5 128 88.3
Lsat_1_v5_gn_2_28381 Lactuca sativa HOM05D006044 ORTHO05D007653 1.2e-57 226.5 119 92.4
Sc12g0010240 Simmondsia chinensis HOM05D006044 ORTHO05D007653 1.2e-57 226.5 128 89.8
CSS0014603 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 1.5e-57 226.1 128 89.1
Lsat_1_v5_gn_2_111680 Lactuca sativa HOM05D006044 ORTHO05D007653 1.5e-57 226.1 119 92.4
Medtr5g089300 Medicago truncatula HOM05D006044 ORTHO05D007653 1.5e-57 226.1 128 88.3
Hma1.2p1_1357F.1_g277915 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 2.0e-57 225.7 121 91.7
Psat2g020640 Pisum sativum HOM05D006044 ORTHO05D007653 2.0e-57 225.7 121 90.1
Atru.chr3.2998 Acer truncatum HOM05D006044 ORTHO05D007653 2.6e-57 225.3 128 88.3
CANSAT11G0073 Cannabis sativa HOM05D006044 ORTHO05D007653 2.6e-57 225.3 121 90.1
Gohir.A13G218400 Gossypium hirsutum HOM05D006044 ORTHO05D007653 2.6e-57 225.3 128 88.3
Gohir.D13G222100 Gossypium hirsutum HOM05D006044 ORTHO05D007653 2.6e-57 225.3 128 88.3
Gorai.013G253200 Gossypium raimondii HOM05D006044 ORTHO05D007653 2.6e-57 225.3 128 88.3
MD08G1047500 Malus domestica HOM05D006044 ORTHO05D007653 2.6e-57 225.3 128 88.3
LjContig00564g0010691 Lotus japonicus HOM05D006044 ORTHO05D007653 3.4e-57 224.9 121 90.1
GSVIVG01037329001 Vitis vinifera HOM05D006044 ORTHO05D007653 3.4e-57 224.9 128 87.5
Nn7g36759 Nelumbo nucifera HOM05D006044 ORTHO05D007653 4.5e-57 224.6 128 88.3
HanXRQChr14g0453721 Helianthus annuus HOM05D006044 ORTHO05D007653 5.8e-57 224.2 119 91.6
THA.LOC104811201 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 5.8e-57 224.2 128 87.5
TWI75G0655 Tripterygium wilfordii HOM05D006044 ORTHO05D007653 5.8e-57 224.2 128 89.1
CiPaw.14G111700 Carya illinoinensis HOM05D006044 ORTHO05D007653 7.6e-57 223.8 128 88.3
QL01p016848 Quercus lobata HOM05D006044 ORTHO05D007653 7.6e-57 223.8 127 87.4
THA.LOC104799136 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 1.0e-56 223.4 128 87.5
TAR633G2719 Trochodendron aralioides HOM05D006044 ORTHO05D007653 1.0e-56 223.4 128 87.5
Aa31LG3G15040 Aethionema arabicum HOM05D006044 ORTHO05D007653 1.3e-56 223.0 128 88.3
CDE09G0744 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 1.3e-56 223.0 127 89.0
Ca_06201_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.3e-56 223.0 121 89.3
Ca_11896_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.3e-56 223.0 128 86.7
Cfa009890 Carpinus fangiana HOM05D006044 ORTHO05D007653 1.7e-56 222.6 128 87.5
COL.COLO4_24488 Corchorus olitorius HOM05D006044 ORTHO05D007653 1.7e-56 222.6 128 86.7
Haze_23252 Corylus avellana HOM05D006044 ORTHO05D007653 1.7e-56 222.6 128 87.5
Potri.001G273200 Populus trichocarpa HOM05D006044 ORTHO05D007653 1.7e-56 222.6 125 89.6
Thecc.09G247200 Theobroma cacao HOM05D006044 ORTHO05D007653 2.2e-56 222.2 128 86.7
Prupe.1G400800 Prunus persica HOM05D006044 ORTHO05D007653 2.9e-56 221.9 128 86.7
AagrBONN_evm.TU.Sc2ySwM_117.1592 Anthoceros agrestis HOM05D006044 ORTHO05D007653 4.9e-56 221.1 121 90.1
PGR102G0082 Punica granatum HOM05D006044 ORTHO05D007653 4.9e-56 221.1 128 86.7
Ah.05g173120 Amaranthus hybridus HOM05D006044 ORTHO05D007653 6.5e-56 220.7 126 88.1
ClCG02G022780 Citrullus lanatus HOM05D006044 ORTHO05D007653 1.1e-55 219.9 129 86.8
MELO3C014555.2 Cucumis melo HOM05D006044 ORTHO05D007653 1.1e-55 219.9 129 86.8
ECA238G3020 Erigeron canadensis HOM05D006044 ORTHO05D007653 1.1e-55 219.9 118 90.7
Eucgr.B03747 Eucalyptus grandis HOM05D006044 ORTHO05D007653 1.1e-55 219.9 128 85.9
Rhsim13G0207900 Rhododendron simsii HOM05D006044 ORTHO05D007653 1.1e-55 219.9 128 86.7
SEGI_07566 Sequoiadendron giganteum HOM05D006044 ORTHO05D007653 1.1e-55 219.9 128 85.9
ATR0763G184 Amborella trichopoda HOM05D006044 ORTHO05D007653 1.4e-55 219.5 128 85.2
EL10Ac1g00766 Beta vulgaris HOM05D006044 ORTHO05D007653 1.4e-55 219.5 126 88.1
EL10Ac5g12840 Beta vulgaris HOM05D006044 ORTHO05D007653 1.4e-55 219.5 126 88.1
A03p05430 Brassica napus HOM05D006044 ORTHO05D007653 1.4e-55 219.5 128 85.9
C03p06320 Brassica napus HOM05D006044 ORTHO05D007653 1.4e-55 219.5 128 85.9
BolC3t13140H Brassica oleracea HOM05D006044 ORTHO05D007653 1.4e-55 219.5 128 85.9
BraA03t09881Z Brassica rapa HOM05D006044 ORTHO05D007653 1.4e-55 219.5 128 85.9
Pp3c1_15740 Physcomitrium patens HOM05D006044 ORTHO05D007653 1.4e-55 219.5 119 89.9
A10p25610 Brassica napus HOM05D006044 ORTHO05D007653 1.9e-55 219.2 128 86.7
BraA10t44628Z Brassica rapa HOM05D006044 ORTHO05D007653 1.9e-55 219.2 128 86.7
Mapoly0207s0011 Marchantia polymorpha HOM05D006044 ORTHO05D007653 1.9e-55 219.2 120 89.2
BcaB01g05427 Brassica carinata HOM05D006044 ORTHO05D007653 2.5e-55 218.8 128 85.2
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 2.5e-55 218.8 128 85.9
Thhalv10015024m.g Eutrema salsugineum HOM05D006044 ORTHO05D007653 2.5e-55 218.8 128 85.9
Sp6g31450 Schrenkiella parvula HOM05D006044 ORTHO05D007653 4.2e-55 218.0 128 85.2
AUR62013740 Chenopodium quinoa HOM05D006044 ORTHO05D007653 5.5e-55 217.6 126 86.5
AUR62023411 Chenopodium quinoa HOM05D006044 ORTHO05D007653 5.5e-55 217.6 126 86.5
PSO339G3702 Papaver somniferum HOM05D006044 ORTHO05D007653 5.5e-55 217.6 128 85.2
PSO384G3308 Papaver somniferum HOM05D006044 ORTHO05D007653 5.5e-55 217.6 128 85.2
Potri.009G067500 Populus trichocarpa HOM05D006044 ORTHO05D007653 5.5e-55 217.6 118 89.8
MBI19_g20794_MAGBIO Magnolia biondii HOM05D006044 ORTHO05D007653 7.1e-55 217.2 128 85.9
Sabra09G0050500 Salix brachista HOM05D006044 ORTHO05D007653 7.1e-55 217.2 125 86.4
Aqoxy2G00401 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 1.2e-54 216.5 128 86.7
CDE08G0916 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 1.2e-54 216.5 121 90.1
Ciclev10017186m.g Citrus clementina HOM05D006044 ORTHO05D007653 1.2e-54 216.5 128 83.6
AL6G22970 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 2.7e-54 215.3 128 85.2
AT5G12190 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 2.7e-54 215.3 128 85.2
Carub.0006s1069 Capsella rubella HOM05D006044 ORTHO05D007653 2.7e-54 215.3 128 85.2
Dinv09443 Davidia involucrata HOM05D006044 ORTHO05D007653 2.7e-54 215.3 116 92.2
Os03g0811700 Oryza sativa ssp. japonica HOM05D006044 ORTHO05D007653 4.6e-54 214.5 126 85.7
Dinv37467 Davidia involucrata HOM05D006044 ORTHO05D007653 7.9e-54 213.8 116 91.4
Nn017s41474 Nelumbo nucifera HOM05D006044 ORTHO05D007653 1.3e-53 213.0 116 90.5
HPP92_019149 Vanilla planifolia HOM05D006044 ORTHO05D007653 3.0e-53 211.8 119 85.7
CBR_g501 Chara braunii HOM05D006044 ORTHO05D007653 1.1e-52 209.9 117 87.2
BcaNung07015 Brassica carinata HOM05D006044 ORTHO05D007653 5.7e-52 207.6 115 88.7
Zm00001eb062150 Zea mays HOM05D006044 ORTHO05D007653 5.7e-52 207.6 130 80.8
Zm00001eb212190 Zea mays HOM05D006044 ORTHO05D007653 5.7e-52 207.6 130 80.8
CARHR200930 Cardamine hirsuta HOM05D006044 ORTHO05D007653 9.0e-50 200.3 128 78.9
Ca_07394_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 1.2e-49 199.9 128 80.5
Aqoxy2G00402 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 3.5e-46 188.3 119 74.8
SMO143G0133 Selaginella moellendorffii HOM05D006044 ORTHO05D007653 6.1e-46 187.6 119 79.0
CSS0031497 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 3.0e-45 185.3 142 70.4
AL3G46680 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 5.1e-45 184.5 121 74.4
MD13G1049300 Malus domestica HOM05D006044 ORTHO05D007653 5.7e-44 181.0 109 83.5
Cre03.g158950 Chlamydomonas reinhardtii HOM05D006044 ORTHO05D007653 1.6e-43 179.5 119 71.4
MCO15G700 Micromonas commoda HOM05D006044 ORTHO05D007653 5.5e-39 164.5 93 83.9
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 2.7e-38 162.2 85 90.6
EL10Ac9g21533 Beta vulgaris HOM05D006044 ORTHO05D007653 1.4e-34 149.8 94 83.0
PRCOL_00006242 Prasinoderma coloniale HOM05D006044 ORTHO05D007653 1.3e-32 143.3 109 60.6
Haze_26695 Corylus avellana HOM05D006044 ORTHO05D007653 6.7e-29 131.0 113 49.6
AT2G14870 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 1.5e-23 113.2 70 72.9
SGA_v2.0_scaffold34G13906 Striga asiatica HOM05D006044 ORTHO05D007653 1.6e-22 109.8 100 58.0
SGA_v2.0_scaffold5G02950 Striga asiatica HOM05D006044 ORTHO05D007653 1.0e-16 90.5 73 61.6
SalBow1G3729 Salvia bowleyana HOM05D006044 ORTHO05D357234 3.2e-15 85.5 42 95.2
SGA_v2.0_scaffold198G41064 Striga asiatica HOM05D006044 ORTHO05D400222 1.0e-08 63.9 102 41.2
Pp3c14_2340 Physcomitrium patens HOM05D006044 ORTHO05D318821 1.1e-07 60.5 31 87.1
Dinv40333 Davidia involucrata HOM05D001413 ORTHO05D001385 2.5e-07 59.3 81 39.5
Gorai.003G183300 Gossypium raimondii HOM05D000142 ORTHO05D003173 1.2e-06 57.0 84 35.7
Nn1g08454 Nelumbo nucifera HOM05D000604 ORTHO05D004856 1.6e-06 56.6 111 31.5
Sed0014227 Sechium edule HOM05D000604 ORTHO05D004856 1.6e-06 56.6 134 31.3
COL.COLO4_11167 Corchorus olitorius HOM05D002411 ORTHO05D002564 2.7e-06 55.8 75 36.0
Lalb_Chr19g0132151 Lupinus albus HOM05D000604 ORTHO05D004856 2.7e-06 55.8 99 30.3
AL1G12240 Arabidopsis lyrata HOM05D001413 ORTHO05D001385 3.6e-06 55.5 74 36.5
Dinv30820 Davidia involucrata HOM05D001413 ORTHO05D001385 3.6e-06 55.5 72 40.3
Duzib150G0537 Durio zibethinus HOM05D002411 ORTHO05D002564 3.6e-06 55.5 75 36.0
Duzib168G0560 Durio zibethinus HOM05D002411 ORTHO05D002564 3.6e-06 55.5 75 36.0
Potri.005G024600 Populus trichocarpa HOM05D001413 ORTHO05D001385 3.6e-06 55.5 64 45.3
Thecc.09G359100 Theobroma cacao HOM05D002411 ORTHO05D002564 3.6e-06 55.5 75 36.0
MBI14_g23541_MAGBIO Magnolia biondii HOM05D000910 ORTHO05D000852 4.7e-06 55.1 86 39.5
Mapoly0042s0009 Marchantia polymorpha HOM05D000142 ORTHO05D001253 4.7e-06 55.1 96 33.3
SGA_v2.0_scaffold25G10780 Striga asiatica HOM05D000142 ORTHO05D001253 4.7e-06 55.1 78 35.9
Gohir.A03G000053 Gossypium hirsutum HOM05D000142 ORTHO05D003173 6.1e-06 54.7 84 34.5
Cre01.g024200 Chlamydomonas reinhardtii HOM05D004266 ORTHO05D005151 8.0e-06 54.3 92 31.5
FAN21G1851 Fragaria x ananassa HOM05D005326 ORTHO05D006734 8.0e-06 54.3 95 34.7
Glyma.14G115100 Glycine max HOM05D005326 ORTHO05D006734 8.0e-06 54.3 99 32.3
PGR102G3118 Punica granatum HOM05D002411 ORTHO05D002564 8.0e-06 54.3 83 38.6
QL07p023287 Quercus lobata HOM05D000845 ORTHO05D009756 8.0e-06 54.3 93 35.5
Rhsim05G0079400 Rhododendron simsii HOM05D005106 ORTHO05D006224 8.0e-06 54.3 108 32.4
Hund21715 Selenicereus undatus HOM05D001413 ORTHO05D001385 8.0e-06 54.3 77 37.7
unitig_699.g19203 Utricularia gibba HOM05D005326 ORTHO05D006734 8.0e-06 54.3 99 30.3


User provided reference genes

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