Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold37G14665 Striga asiatica HOM05D005498 ORTHO05D006719 2.7e-142 508.8 288 100.0
SGA_v2.0_scaffold5G02818 Striga asiatica HOM05D005498 ORTHO05D006719 5.4e-127 458.0 288 91.0
Migut.I00649 Erythranthe guttata HOM05D005498 ORTHO05D006719 5.4e-119 431.4 288 86.5
MSTRG.22826 Avicennia marina HOM05D005498 ORTHO05D006719 2.7e-118 429.1 286 86.0
Cc04_g05550 Coffea canephora HOM05D005498 ORTHO05D006719 1.7e-112 409.8 289 80.6
CSS0015612 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 4.9e-112 408.3 289 81.7
Actinidia36852 Actinidia chinensis HOM05D005498 ORTHO05D006719 3.5e-110 402.1 289 78.9
Nitab4.5_0000976g0330 Nicotiana tabacum HOM05D005498 ORTHO05D006719 3.9e-109 398.7 305 72.5
PGSC0003DMG400014166 Solanum tuberosum HOM05D005498 ORTHO05D006719 7.3e-108 394.4 288 75.0
Nitab4.5_0007669g0040 Nicotiana tabacum HOM05D005498 ORTHO05D006719 9.6e-108 394.0 296 77.0
Solyc03g117940.3 Solanum lycopersicum HOM05D005498 ORTHO05D006719 6.2e-107 391.3 288 74.3
Dinv13692 Davidia involucrata HOM05D005498 ORTHO05D006719 9.0e-106 387.5 256 81.6
Sopen03g036840 Solanum pennellii HOM05D005498 ORTHO05D006719 2.2e-104 382.9 288 73.6
Lj9A489T67 Lonicera japonica HOM05D005498 ORTHO05D006719 3.8e-104 382.1 308 72.1
TAR622G0889 Trochodendron aralioides HOM05D005498 ORTHO05D006719 4.9e-104 381.7 289 76.1
CAN.G1008.34 Capsicum annuum HOM05D005498 ORTHO05D006719 6.4e-104 381.3 287 73.2
MBI07_g11055_MAGBIO Magnolia biondii HOM05D005498 ORTHO05D006719 4.2e-103 378.6 289 75.8
Prupe.1G210100 Prunus persica HOM05D005498 ORTHO05D006719 1.2e-102 377.1 288 74.7
Sed0026884 Sechium edule HOM05D005498 ORTHO05D006719 1.2e-102 377.1 288 72.9
Thecc.01G236700 Theobroma cacao HOM05D005498 ORTHO05D006719 2.1e-102 376.3 288 71.9
Gohir.A10G154800 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.3e-101 373.6 289 72.3
Gohir.D10G111100 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.3e-101 373.6 289 72.3
Duzib264G0012 Durio zibethinus HOM05D005498 ORTHO05D006719 1.7e-101 373.2 288 71.2
Eucgr.J01697 Eucalyptus grandis HOM05D005498 ORTHO05D006719 3.0e-101 372.5 289 74.0
CiPaw.05G096800 Carya illinoinensis HOM05D005498 ORTHO05D006719 3.9e-101 372.1 289 72.3
Gorai.011G122500 Gossypium raimondii HOM05D005498 ORTHO05D006719 6.6e-101 371.3 287 72.1
Nn3g16174 Nelumbo nucifera HOM05D005498 ORTHO05D006719 6.6e-101 371.3 289 75.1
Rhsim12G0182600 Rhododendron simsii HOM05D005498 ORTHO05D006719 4.3e-100 368.6 288 75.0
PGR119G1930 Punica granatum HOM05D005498 ORTHO05D006719 5.6e-100 368.2 290 71.0
Manes.08G098200 Manihot esculenta HOM05D005498 ORTHO05D006719 9.6e-100 367.5 282 74.5
TWI75G0967 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 9.6e-100 367.5 289 70.6
CsaV3_6G007610 Cucumis sativus L. HOM05D005498 ORTHO05D006719 1.3e-99 367.1 274 71.2
Ciclev10028992m.g Citrus clementina HOM05D005498 ORTHO05D006719 2.1e-99 366.3 289 72.7
MD13G1135200 Malus domestica HOM05D005498 ORTHO05D006719 2.1e-99 366.3 289 74.7
Haze_12543 Corylus avellana HOM05D005498 ORTHO05D006719 3.6e-99 365.5 267 73.8
Potri.003G158800 Populus trichocarpa HOM05D005498 ORTHO05D006719 3.6e-99 365.5 291 74.9
MD16G1130900 Malus domestica HOM05D005498 ORTHO05D006719 4.8e-99 365.2 289 74.7
TWI36G1055 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 4.8e-99 365.2 289 70.6
TWI75G1441 Tripterygium wilfordii HOM05D005498 ORTHO05D006719 1.1e-98 364.0 289 69.9
THA.LOC104820204 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 4.0e-98 362.1 286 68.5
HPP92_001926 Vanilla planifolia HOM05D005498 ORTHO05D006356 4.0e-98 362.1 278 73.0
RcHm_v2.0_Chr4g0428191 Rosa chinensis HOM05D005498 ORTHO05D006719 6.9e-98 361.3 289 75.8
Sabra03G0115200 Salix brachista HOM05D005498 ORTHO05D006719 6.9e-98 361.3 283 74.2
Glyma.20G075100 Glycine max HOM05D005498 ORTHO05D006719 1.2e-97 360.5 289 69.9
Aqoxy3G01715 Aquilegia oxysepala HOM05D005498 ORTHO05D006719 2.0e-97 359.8 286 73.4
FvH4_4g21991 Fragaria vesca HOM05D005498 ORTHO05D006719 2.6e-97 359.4 287 75.3
FAN07G2790 Fragaria x ananassa HOM05D005498 ORTHO05D006719 2.6e-97 359.4 289 74.7
PSO017G5587 Papaver somniferum HOM05D005498 ORTHO05D006719 2.6e-97 359.4 288 71.9
GSVIVG01001138001 Vitis vinifera HOM05D005498 ORTHO05D006719 2.6e-97 359.4 288 71.5
Hund15325 Selenicereus undatus HOM05D005498 ORTHO05D006719 3.4e-97 359.0 302 67.5
FAN17G1337 Fragaria x ananassa HOM05D005498 ORTHO05D006719 7.6e-97 357.8 289 74.4
PSO478G3668 Papaver somniferum HOM05D005498 ORTHO05D006719 9.9e-97 357.5 277 73.3
LjContig00470g0019612 Lotus japonicus HOM05D005498 ORTHO05D006719 6.4e-96 354.8 278 71.6
EL10Ac2g02403 Beta vulgaris HOM05D005498 ORTHO05D006719 8.4e-96 354.4 291 71.1
Lj3g0014785 Lotus japonicus HOM05D005498 ORTHO05D006719 2.4e-95 352.8 274 70.4
SalBow7G1334 Salvia bowleyana HOM05D005498 ORTHO05D006719 3.2e-95 352.4 287 75.6
arahy.Tifrunner.gnm1.ann1.LXGX9H Arachis hypogaea HOM05D005498 ORTHO05D006719 4.2e-95 352.1 287 71.1
Potri.001G072100 Populus trichocarpa HOM05D005498 ORTHO05D006719 5.5e-95 351.7 289 71.3
arahy.Tifrunner.gnm1.ann1.JCC7XL Arachis hypogaea HOM05D005498 ORTHO05D006719 9.3e-95 350.9 287 70.4
Phvul.003G001500 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 1.2e-94 350.5 289 69.9
Ca_04134_v3 Cicer arietinum L. HOM05D005498 ORTHO05D006719 2.1e-94 349.7 287 71.8
Lsat_1_v5_gn_5_9301 Lactuca sativa HOM05D005498 ORTHO05D006719 4.6e-94 348.6 286 68.9
ECA246G1673 Erigeron canadensis HOM05D005498 ORTHO05D006719 6.0e-94 348.2 288 68.1
CDE11G0700 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 1.8e-93 346.7 280 73.2
Sabra01G0050700 Salix brachista HOM05D005498 ORTHO05D006719 1.8e-93 346.7 319 67.7
VMungo0251G3521 Vigna mungo HOM05D005498 ORTHO05D006719 1.8e-93 346.7 290 71.7
CDE02G3318 Ceratophyllum demersum HOM05D005498 ORTHO05D006719 5.1e-93 345.1 242 79.8
Glyma.10G123200 Glycine max HOM05D005498 ORTHO05D006719 5.1e-93 345.1 288 68.4
Lalb_Chr21g0307771 Lupinus albus HOM05D005498 ORTHO05D006719 6.7e-93 344.7 294 70.1
ATR0582G093 Amborella trichopoda HOM05D005498 ORTHO05D006719 1.9e-92 343.2 296 67.9
Os02g0234800 Oryza sativa ssp. japonica HOM05D005498 ORTHO05D006719 1.9e-92 343.2 276 72.8
HanXRQChr05g0154501 Helianthus annuus HOM05D005498 ORTHO05D006719 3.3e-92 342.4 288 68.8
Psat1g052840 Pisum sativum HOM05D005498 ORTHO05D006719 3.7e-91 339.0 293 69.6
AL1G20310 Arabidopsis lyrata HOM05D005498 ORTHO05D006719 6.2e-91 338.2 254 72.8
Zm00001eb064600 Zea mays HOM05D005498 ORTHO05D006719 3.1e-90 335.9 290 70.7
CARHR009720 Cardamine hirsuta HOM05D005498 ORTHO05D006719 1.5e-89 333.6 256 69.9
Medtr6g004180 Medicago truncatula HOM05D005498 ORTHO05D006719 1.5e-89 333.6 288 67.0
AUR62037729 Chenopodium quinoa HOM05D005498 ORTHO05D006719 3.4e-89 332.4 289 71.3
MELO3C022370.2 Cucumis melo HOM05D005498 ORTHO05D006719 4.5e-89 332.0 288 65.3
THA.LOC104823693 Tarenaya hassleriana HOM05D005498 ORTHO05D006719 7.6e-89 331.3 286 65.7
A09p65320 Brassica napus HOM05D005498 ORTHO05D006719 1.3e-88 330.5 243 75.3
AT1G09760 Arabidopsis thaliana HOM05D005498 ORTHO05D006719 1.7e-88 330.1 254 72.0
Carub.0001s0910 Capsella rubella HOM05D005498 ORTHO05D006719 1.7e-88 330.1 250 73.2
TPR.G25230 Trifolium pratense HOM05D005498 ORTHO05D006719 1.7e-88 330.1 289 67.8
Thhalv10008494m.g Eutrema salsugineum HOM05D005498 ORTHO05D006719 2.2e-88 329.7 243 73.3
A06p06430 Brassica napus HOM05D005498 ORTHO05D006719 4.9e-88 328.6 243 75.3
BraA06t23854Z Brassica rapa HOM05D005498 ORTHO05D006719 4.9e-88 328.6 243 75.3
HanXRQChr06g0174511 Helianthus annuus HOM05D005498 ORTHO05D006719 4.9e-88 328.6 288 66.3
Lalb_Chr02g0144691 Lupinus albus HOM05D005498 ORTHO05D006719 6.5e-88 328.2 289 67.8
C08p49270 Brassica napus HOM05D005498 ORTHO05D006719 1.4e-87 327.0 243 75.7
Sc04g0000070 Simmondsia chinensis HOM05D005498 ORTHO05D006719 1.4e-87 327.0 260 72.3
C05p07830 Brassica napus HOM05D005498 ORTHO05D006719 2.5e-87 326.2 243 74.5
BolC5t29534H Brassica oleracea HOM05D005498 ORTHO05D006719 2.5e-87 326.2 243 74.5
C08p13170 Brassica napus HOM05D005498 ORTHO05D006719 4.2e-87 325.5 243 72.0
BolC8t48946H Brassica oleracea HOM05D005498 ORTHO05D006719 4.2e-87 325.5 243 72.0
BraA08t35348Z Brassica rapa HOM05D005498 ORTHO05D006719 4.2e-87 325.5 243 72.8
BcaC07g41860 Brassica carinata HOM05D005498 ORTHO05D006719 7.1e-87 324.7 243 75.3
BraA09t41876Z Brassica rapa HOM05D005498 ORTHO05D006719 9.3e-87 324.3 257 70.8
A08p34360 Brassica napus HOM05D005498 ORTHO05D006719 1.2e-86 323.9 243 72.8
BolC8t52462H Brassica oleracea HOM05D005498 ORTHO05D006719 1.6e-86 323.6 257 71.6
COL.COLO4_24568 Corchorus olitorius HOM05D005498 ORTHO05D006719 1.8e-85 320.1 286 67.8
Sp1g08350 Schrenkiella parvula HOM05D005498 ORTHO05D006719 3.0e-85 319.3 283 65.4
Atru.chr12.1486 Acer truncatum HOM05D005498 ORTHO05D006719 3.7e-83 312.4 286 65.7
Aa31LG1G5230 Aethionema arabicum HOM05D005498 ORTHO05D006719 1.2e-81 307.4 257 68.1
CSS0017542 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 3.4e-81 305.8 261 72.0
Sc04g0000010 Simmondsia chinensis HOM05D005498 ORTHO05D006719 6.5e-80 301.6 246 71.1
Hund15317 Selenicereus undatus HOM05D005498 ORTHO05D006719 5.5e-79 298.5 260 65.8
Mapoly0014s0064 Marchantia polymorpha HOM05D005498 ORTHO05D006719 9.3e-79 297.7 273 62.3
CSS0028024 Camellia sinensis var. sinensis HOM05D005498 ORTHO05D006719 3.0e-77 292.7 288 60.4
AUR62020276 Chenopodium quinoa HOM05D005498 ORTHO05D006719 1.3e-75 287.3 211 78.7
Pp3c8_21390 Physcomitrium patens HOM05D005498 ORTHO05D006719 5.5e-71 271.9 293 57.7
Pp3c20_1630 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.2e-70 270.8 278 58.3
Pp3c23_20060 Physcomitrium patens HOM05D005498 ORTHO05D006719 1.6e-70 270.4 271 62.0
unitig_8.g3047 Utricularia gibba HOM05D005498 ORTHO05D006719 1.8e-69 266.9 289 59.5
Peaxi162Scf00314g00830 Petunia axillaris HOM05D005498 ORTHO05D006719 2.0e-68 263.5 229 67.2
Cpa.g.sc2660.1 Carica papaya HOM05D005498 ORTHO05D006719 4.1e-66 255.8 153 89.5
Ah.10g024870 Amaranthus hybridus HOM05D005498 ORTHO05D006719 5.3e-66 255.4 153 90.8
Actinidia08921 Actinidia chinensis HOM05D005498 ORTHO05D006719 5.3e-58 228.8 205 65.9
Cre16.g679600 Chlamydomonas reinhardtii HOM05D005498 ORTHO05D006719 1.8e-53 213.8 266 48.9
AagrBONN_evm.TU.Sc2ySwM_362.2343 Anthoceros agrestis HOM05D005498 ORTHO05D006719 6.3e-51 205.3 204 54.4
DCAR_021388 Daucus carota HOM05D005498 ORTHO05D006719 1.3e-48 197.6 125 81.6
Gorai.007G212800 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.9e-47 193.7 181 60.2
Oeu027824.1 Olea europaea HOM05D005498 ORTHO05D006719 3.2e-47 193.0 289 47.4
SMO203G0044 Selaginella moellendorffii HOM05D005498 ORTHO05D006719 4.2e-47 192.6 153 71.2
Phvul.009G235000 Phaseolus vulgaris HOM05D005498 ORTHO05D006719 5.5e-47 192.2 179 63.7
Gorai.006G052400 Gossypium raimondii HOM05D005498 ORTHO05D006719 2.0e-41 173.7 153 63.4
Gohir.D11G198700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 2.0e-36 157.1 181 53.6
Gohir.D13G083750 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.8e-34 150.6 181 52.5
Gohir.D13G071700 Gossypium hirsutum HOM05D005498 ORTHO05D006719 1.6e-33 147.5 181 50.8
PRCOL_00001779 Prasinoderma coloniale HOM05D005498 ORTHO05D006719 3.6e-30 136.3 236 38.1
FAN12G0959 Fragaria x ananassa HOM05D005498 ORTHO05D006719 8.3e-27 125.2 67 91.0
Gorai.010G065400 Gossypium raimondii HOM05D005498 ORTHO05D006719 1.4e-26 124.4 105 61.9
Ah.10g024860 Amaranthus hybridus HOM05D005498 ORTHO05D006719 1.1e-23 114.8 136 57.4
Cpa.g.sc38.27 Carica papaya HOM05D005498 ORTHO05D006719 1.5e-23 114.4 139 52.5
RcHm_v2.0_Chr4g0427471 Rosa chinensis HOM05D000753 ORTHO05D006719 7.8e-17 92.0 137 52.6
MELO3C026686.2 Cucumis melo HOM05D005498 ORTHO05D006719 2.3e-16 90.5 105 53.3
arahy.Tifrunner.gnm1.ann1.UV1K7Q Arachis hypogaea HOM05D005498 ORTHO05D006719 3.3e-15 86.7 73 57.5
PSO591G0416 Papaver somniferum HOM05D005498 ORTHO05D006719 1.4e-13 81.3 73 58.9
SHI04092 Sapria himalayana HOM05D003771 ORTHO05D004396 6.0e-09 65.9 42 73.8
CBR_g3778 Chara braunii HOM05D005498 ORTHO05D006719 3.3e-07 60.1 48 62.5


User provided reference genes

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