Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold36G14317 Striga asiatica HOM05D001090 ORTHO05D006167 2.1e-118 429.1 221 100.0
SGA_v2.0_scaffold198G41106 Striga asiatica HOM05D001090 ORTHO05D006167 8.2e-91 337.4 220 83.2
MSTRG.15096 Avicennia marina HOM05D001090 ORTHO05D006167 6.7e-85 317.8 219 77.6
Solyc01g080850.4 Solanum lycopersicum HOM05D001090 ORTHO05D006167 6.3e-75 284.6 223 72.6
Sopen01g030630 Solanum pennellii HOM05D001090 ORTHO05D006167 1.8e-74 283.1 223 72.2
Migut.N00921 Erythranthe guttata HOM05D001090 ORTHO05D006167 2.4e-74 282.7 228 74.1
Dinv12082 Davidia involucrata HOM05D001090 ORTHO05D006167 9.1e-74 280.8 219 72.6
Rhsim01G0000300 Rhododendron simsii HOM05D001090 ORTHO05D006167 5.0e-72 275.0 220 68.2
CAN.G100.57 Capsicum annuum HOM05D001090 ORTHO05D006167 6.7e-69 264.6 225 69.3
TWI59G0772 Tripterygium wilfordii HOM05D001090 ORTHO05D006167 8.8e-69 264.2 222 66.2
Peaxi162Scf00309g00913 Petunia axillaris HOM05D001090 ORTHO05D006167 1.1e-68 263.8 220 67.7
GSVIVG01028251001 Vitis vinifera HOM05D001090 ORTHO05D006167 2.8e-67 259.2 221 67.4
Atru.chr5.863 Acer truncatum HOM05D001090 ORTHO05D006167 1.4e-66 256.9 221 67.9
Glyma.19G221300 Glycine max HOM05D001090 ORTHO05D006167 5.3e-66 255.0 220 63.6
Cfa004911 Carpinus fangiana HOM05D001090 ORTHO05D006167 7.0e-66 254.6 219 63.9
Potri.002G187100 Populus trichocarpa HOM05D001090 ORTHO05D006167 9.1e-66 254.2 221 65.2
Glyma.03G224400 Glycine max HOM05D001090 ORTHO05D006167 1.6e-65 253.4 220 63.2
Nitab4.5_0003092g0010 Nicotiana tabacum HOM05D001090 ORTHO05D006167 2.0e-65 253.1 219 65.8
Haze_05146 Corylus avellana HOM05D001090 ORTHO05D006167 3.5e-65 252.3 222 63.5
Nitab4.5_0000222g0360 Nicotiana tabacum HOM05D001090 ORTHO05D006167 5.9e-65 251.5 221 65.6
Potri.014G112600 Populus trichocarpa HOM05D001090 ORTHO05D006167 5.9e-65 251.5 219 66.2
vmacro02360 Vaccinium macrocarpon HOM05D001090 ORTHO05D006167 5.0e-64 248.4 216 62.5
Gohir.D11G109400 Gossypium hirsutum HOM05D001090 ORTHO05D006167 6.5e-64 248.1 220 65.0
Phvul.001G218200 Phaseolus vulgaris HOM05D001090 ORTHO05D006167 6.5e-64 248.1 220 61.8
Gorai.007G117000 Gossypium raimondii HOM05D001090 ORTHO05D006167 1.5e-63 246.9 220 64.5
RcHm_v2.0_Chr3g0485911 Rosa chinensis HOM05D001090 ORTHO05D006167 1.9e-63 246.5 186 69.4
arahy.Tifrunner.gnm1.ann1.2022SK Arachis hypogaea HOM05D001410 ORTHO05D006167 2.5e-63 246.1 221 63.8
arahy.Tifrunner.gnm1.ann1.XGP1KG Arachis hypogaea HOM05D001090 ORTHO05D006167 2.5e-63 246.1 221 63.8
Ciclev10018812m.g Citrus clementina HOM05D001090 ORTHO05D006167 3.2e-63 245.7 219 63.9
Cc01_g21790 Coffea canephora HOM05D001090 ORTHO05D006167 7.2e-63 244.6 222 66.7
Gohir.A12G120100 Gossypium hirsutum HOM05D001090 ORTHO05D006167 7.2e-63 244.6 207 66.2
TAR365G0940 Trochodendron aralioides HOM05D001090 ORTHO05D006167 7.2e-63 244.6 221 65.6
PGR142G4102 Punica granatum HOM05D001090 ORTHO05D006167 9.4e-63 244.2 220 61.8
TWI23G1021 Tripterygium wilfordii HOM05D001090 ORTHO05D006167 9.4e-63 244.2 223 63.7
Gohir.A11G104600 Gossypium hirsutum HOM05D001090 ORTHO05D006167 1.6e-62 243.4 220 64.5
Duzib138G0040 Durio zibethinus HOM05D001090 ORTHO05D006167 2.7e-62 242.7 223 62.8
Thecc.01G325100 Theobroma cacao HOM05D001090 ORTHO05D006167 3.6e-62 242.3 220 62.7
DCAR_002936 Daucus carota HOM05D001090 ORTHO05D006167 2.3e-61 239.6 254 57.5
Nn4g25350 Nelumbo nucifera HOM05D001090 ORTHO05D006167 4.0e-61 238.8 217 63.6
Dinv33168 Davidia involucrata HOM05D001090 ORTHO05D006167 1.1e-60 237.3 216 64.8
Sabra14G0082800 Salix brachista HOM05D001090 ORTHO05D006167 1.1e-60 237.3 219 63.9
FvH4_1g26250 Fragaria vesca HOM05D001090 ORTHO05D006167 1.5e-60 236.9 220 61.8
Manes.01G235000 Manihot esculenta HOM05D001090 ORTHO05D006167 1.5e-60 236.9 219 62.6
Lj1g0021730 Lotus japonicus HOM05D001090 ORTHO05D006167 2.0e-60 236.5 222 62.2
COL.COLO4_23131 Corchorus olitorius HOM05D001090 ORTHO05D006167 7.5e-60 234.6 220 59.5
FAN26G0681 Fragaria x ananassa HOM05D001090 ORTHO05D006167 3.7e-59 232.3 214 59.8
FAN23G2339 Fragaria x ananassa HOM05D001090 ORTHO05D006167 6.3e-59 231.5 220 60.9
Manes.05G009100 Manihot esculenta HOM05D001090 ORTHO05D006167 6.3e-59 231.5 219 62.1
FAN28G2823 Fragaria x ananassa HOM05D001090 ORTHO05D006167 1.1e-58 230.7 220 60.9
Eucgr.K00564 Eucalyptus grandis HOM05D001090 ORTHO05D006167 1.8e-58 229.9 169 68.6
QL12p034939 Quercus lobata HOM05D001090 ORTHO05D006167 1.8e-58 229.9 223 58.3
THA.LOC104801326 Tarenaya hassleriana HOM05D001090 ORTHO05D006167 2.4e-58 229.6 228 60.5
Lj1A8G48 Lonicera japonica HOM05D001090 ORTHO05D006167 5.3e-58 228.4 223 62.8
Sed0008475 Sechium edule HOM05D001090 ORTHO05D006167 1.2e-57 227.3 172 66.3
Prupe.3G002800 Prunus persica HOM05D001090 ORTHO05D006167 3.5e-57 225.7 222 59.9
CANSAT25G3150 Cannabis sativa HOM05D001090 ORTHO05D006167 7.7e-57 224.6 218 57.8
Lsat_1_v5_gn_8_125581 Lactuca sativa HOM05D001090 ORTHO05D006167 1.0e-56 224.2 163 73.0
Sc17g0000010 Simmondsia chinensis HOM05D001090 ORTHO05D006167 1.0e-56 224.2 186 64.5
Oeu038075.1 Olea europaea HOM05D001090 ORTHO05D006167 2.2e-56 223.0 228 61.4
AL6G51490 Arabidopsis lyrata HOM05D001090 ORTHO05D006167 1.1e-55 220.7 221 59.3
MD17G1284900 Malus domestica HOM05D001090 ORTHO05D006167 1.1e-55 220.7 229 57.6
Carub.0006s3541 Capsella rubella HOM05D001090 ORTHO05D006167 2.5e-55 219.5 225 60.0
Ca_09245_v3 Cicer arietinum L. HOM05D001090 ORTHO05D006167 3.2e-55 219.2 185 64.3
Gohir.D12G123700 Gossypium hirsutum HOM05D001090 ORTHO05D006167 7.2e-55 218.0 207 61.4
Gorai.008G134800 Gossypium raimondii HOM05D001090 ORTHO05D006167 7.2e-55 218.0 207 61.4
Psat3g016720 Pisum sativum HOM05D001090 ORTHO05D006167 8.0e-54 214.5 184 66.8
AT4G01810 Arabidopsis thaliana HOM05D001090 ORTHO05D006167 1.0e-53 214.2 223 58.3
MD09G1290300 Malus domestica HOM05D001090 ORTHO05D006167 1.0e-53 214.2 229 55.0
Sabra02G0129700 Salix brachista HOM05D001090 ORTHO05D006167 1.4e-53 213.8 221 58.8
Duzib133G1021 Durio zibethinus HOM05D001090 ORTHO05D006167 1.8e-53 213.4 220 58.2
Medtr7g110640 Medicago truncatula HOM05D001090 ORTHO05D006167 5.2e-53 211.8 144 75.7
Sp6g01660 Schrenkiella parvula HOM05D001090 ORTHO05D006167 1.2e-52 210.7 220 57.7
VMungo1383G1946 Vigna mungo HOM05D001090 ORTHO05D006167 2.0e-52 209.9 167 67.1
ECA233G3948 Erigeron canadensis HOM05D001090 ORTHO05D006167 4.4e-52 208.8 215 55.8
Actinidia25871 Actinidia chinensis HOM05D001090 ORTHO05D006167 5.7e-52 208.4 225 60.9
PSO761G0494 Papaver somniferum HOM05D001090 ORTHO05D006167 4.8e-51 205.3 183 64.5
TPR.G2501 Trifolium pratense HOM05D001090 ORTHO05D006167 1.8e-50 203.4 174 64.9
BcaC04g24072 Brassica carinata HOM05D001090 ORTHO05D006167 2.4e-50 203.0 196 61.2
BolC9t53069H Brassica oleracea HOM05D001090 ORTHO05D006167 2.4e-50 203.0 196 61.2
A09p01300 Brassica napus HOM05D001090 ORTHO05D006167 1.2e-49 200.7 195 62.1
BraA09t35795Z Brassica rapa HOM05D001090 ORTHO05D006167 1.2e-49 200.7 195 62.1
BcaB01g02111 Brassica carinata HOM05D001090 ORTHO05D006167 3.5e-49 199.1 195 62.1
PSO210G7365 Papaver somniferum HOM05D001090 ORTHO05D006167 4.5e-49 198.7 183 62.8
C09p01350 Brassica napus HOM05D001090 ORTHO05D006167 5.9e-49 198.4 195 61.5
CARHR249790 Cardamine hirsuta HOM05D001090 ORTHO05D006167 6.5e-48 194.9 222 55.4
Aqoxy5G02821 Aquilegia oxysepala HOM05D001090 ORTHO05D006167 3.2e-47 192.6 221 53.8
DCAR_005717 Daucus carota HOM05D001090 ORTHO05D006167 4.2e-47 192.2 260 49.2
Aa31LG5G1560 Aethionema arabicum HOM05D001090 ORTHO05D002687 5.5e-47 191.8 222 55.0
Nn3g21945 Nelumbo nucifera HOM05D001090 ORTHO05D006167 5.5e-47 191.8 219 54.3
MELO3C011813.2 Cucumis melo HOM05D001090 ORTHO05D006167 2.1e-46 189.9 134 70.9
CsaV3_5G029690 Cucumis sativus L. HOM05D001090 ORTHO05D002687 1.4e-45 187.2 219 52.5
HPP92_015635 Vanilla planifolia HOM05D001090 ORTHO05D006167 1.8e-45 186.8 203 55.2
HanXRQChr17g0555271 Helianthus annuus HOM05D001090 ORTHO05D006167 1.2e-44 184.1 208 52.9
MBI18_g10371_MAGBIO Magnolia biondii HOM05D001410 ORTHO05D006167 1.3e-43 180.6 189 58.2
Lalb_Chr02g0147141 Lupinus albus HOM05D001090 ORTHO05D006167 1.7e-43 180.3 186 55.4
Hund11624 Selenicereus undatus HOM05D001090 ORTHO05D006167 8.3e-43 177.9 138 66.7
Ah.15g091800 Amaranthus hybridus HOM05D001090 ORTHO05D006167 7.0e-42 174.9 209 51.7
ClCG11G013170 Citrullus lanatus HOM05D001090 ORTHO05D006167 2.9e-40 169.5 219 49.8
CDE08G1158 Ceratophyllum demersum HOM05D001090 ORTHO05D006167 1.1e-39 167.5 232 47.4
Thhalv10028421m.g Eutrema salsugineum HOM05D001090 ORTHO05D006167 1.9e-39 166.8 209 50.7
Lalb_Chr04g0260211 Lupinus albus HOM05D001090 ORTHO05D006167 4.3e-39 165.6 225 51.6
Zm00001eb340490 Zea mays HOM05D001090 ORTHO05D006167 9.5e-39 164.5 202 50.5
Os01g0321700 Oryza sativa ssp. japonica HOM05D001090 ORTHO05D006167 2.8e-38 162.9 154 59.7
Lalb_Chr18g0046391 Lupinus albus HOM05D001090 ORTHO05D006167 4.0e-37 159.1 225 48.9
EL10Ac7g17290 Beta vulgaris HOM05D001090 ORTHO05D006167 6.4e-35 151.8 166 53.0
Actinidia20965 Actinidia chinensis HOM05D001410 ORTHO05D003969 7.8e-33 144.8 187 57.2
ATR0598G284 Amborella trichopoda HOM05D001090 ORTHO05D006167 3.0e-32 142.9 190 48.4
AUR62042130 Chenopodium quinoa HOM05D001090 ORTHO05D006167 3.0e-32 142.9 199 45.7
AUR62042131 Chenopodium quinoa HOM05D001090 ORTHO05D006167 3.0e-32 142.9 199 45.7
SEGI_00376 Sequoiadendron giganteum HOM05D001090 ORTHO05D006167 1.9e-31 140.2 195 45.1
MBI19_g30286_MAGBIO Magnolia biondii HOM05D001090 ORTHO05D006167 3.1e-29 132.9 277 38.6
Nitab4.5_0008430g0030 Nicotiana tabacum HOM05D001090 ORTHO05D006167 1.3e-27 127.5 92 77.2
arahy.Tifrunner.gnm1.ann1.KI1FZN Arachis hypogaea HOM05D001090 ORTHO05D006167 2.9e-27 126.3 154 52.6
AUR62040321 Chenopodium quinoa HOM05D001090 ORTHO05D006167 4.6e-17 92.4 137 38.0
Mapoly0084s0040 Marchantia polymorpha HOM05D001090 ORTHO05D006167 6.6e-16 88.6 176 38.1
Pp3c24_9090 Physcomitrium patens HOM05D001090 ORTHO05D006167 8.6e-16 88.2 185 38.9
Pp3c8_12300 Physcomitrium patens HOM05D001090 ORTHO05D006167 1.8e-13 80.5 142 38.7
AagrBONN_evm.TU.Sc2ySwM_228.1595 Anthoceros agrestis HOM05D001090 ORTHO05D006167 5.8e-12 75.5 67 50.7
SMO119G0041 Selaginella moellendorffii HOM05D001090 ORTHO05D006167 2.9e-11 73.2 57 56.1
CBR_g939 Chara braunii HOM05D001090 ORTHO05D006167 9.2e-10 68.2 193 35.2
unitig_0.g2256 Utricularia gibba HOM05D001090 ORTHO05D006167 1.9e-07 60.5 64 51.6


User provided reference genes

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