Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold34G13906 Striga asiatica HOM05D006044 ORTHO05D007653 2.6e-59 231.9 119 100.0
SGA_v2.0_scaffold310G48206 Striga asiatica HOM05D006044 ORTHO05D007653 3.3e-22 108.6 100 58.0
SGA_v2.0_scaffold3G01443 Striga asiatica HOM05D006044 ORTHO05D007653 3.3e-22 108.6 100 58.0
Prupe.1G025000 Prunus persica HOM05D006044 ORTHO05D007653 1.3e-21 106.7 96 59.4
RcHm_v2.0_Chr4g0388901 Rosa chinensis HOM05D006044 ORTHO05D007653 1.3e-21 106.7 96 58.3
SalBow1G1993 Salvia bowleyana HOM05D006044 ORTHO05D000010 1.3e-21 106.7 96 58.3
SalBow8G2527 Salvia bowleyana HOM05D006044 ORTHO05D007653 1.3e-21 106.7 96 58.3
SGA_v2.0_scaffold5G02950 Striga asiatica HOM05D006044 ORTHO05D007653 1.3e-21 106.7 95 66.3
unitig_27.g25012 Utricularia gibba HOM05D006044 ORTHO05D007653 1.3e-21 106.7 96 58.3
MD08G1047500 Malus domestica HOM05D006044 ORTHO05D007653 1.6e-21 106.3 105 57.1
Migut.N02377 Erythranthe guttata HOM05D006044 ORTHO05D007653 2.2e-21 105.9 96 57.3
CANSAT11G0073 Cannabis sativa HOM05D006044 ORTHO05D007653 2.8e-21 105.5 96 58.3
Cpa.g.sc157.53 Carica papaya HOM05D006044 ORTHO05D007653 2.8e-21 105.5 96 58.3
FvH4_4g01940 Fragaria vesca HOM05D006044 ORTHO05D007653 2.8e-21 105.5 96 57.3
FAN12G1761 Fragaria x ananassa HOM05D006044 ORTHO05D007653 2.8e-21 105.5 96 57.3
FAN22G1152 Fragaria x ananassa HOM05D006044 ORTHO05D007653 2.8e-21 105.5 96 57.3
Manes.01G177500 Manihot esculenta HOM05D006044 ORTHO05D007653 2.8e-21 105.5 96 58.3
GSVIVG01037329001 Vitis vinifera HOM05D006044 ORTHO05D007653 2.8e-21 105.5 96 58.3
unitig_699.g19149 Utricularia gibba HOM05D006044 ORTHO05D007653 3.7e-21 105.1 96 57.3
Glyma.14G035900 Glycine max HOM05D006044 ORTHO05D007653 4.8e-21 104.8 96 57.3
Nitab4.5_0000069g0030 Nicotiana tabacum HOM05D006044 ORTHO05D007653 4.8e-21 104.8 96 57.3
Nitab4.5_0011609g0020 Nicotiana tabacum HOM05D006044 ORTHO05D007653 4.8e-21 104.8 96 57.3
Oeu032567.1 Olea europaea HOM05D006044 ORTHO05D007653 4.8e-21 104.8 105 56.2
Peaxi162Scf00021g02522 Petunia axillaris HOM05D006044 ORTHO05D007653 4.8e-21 104.8 100 56.0
arahy.Tifrunner.gnm1.ann1.6RB8S0 Arachis hypogaea HOM05D006044 ORTHO05D007653 6.3e-21 104.4 96 57.3
arahy.Tifrunner.gnm1.ann1.L4QR06 Arachis hypogaea HOM05D006044 ORTHO05D007653 6.3e-21 104.4 96 57.3
Cc03_g11600 Coffea canephora HOM05D006044 ORTHO05D007653 6.3e-21 104.4 96 57.3
Glyma.02G278800 Glycine max HOM05D006044 ORTHO05D007653 6.3e-21 104.4 96 57.3
Lsat_1_v5_gn_2_111680 Lactuca sativa HOM05D006044 ORTHO05D007653 6.3e-21 104.4 96 57.3
Medtr5g089300 Medicago truncatula HOM05D006044 ORTHO05D007653 6.3e-21 104.4 96 57.3
Phvul.008G202000 Phaseolus vulgaris HOM05D006044 ORTHO05D007653 6.3e-21 104.4 96 57.3
Psat2g020640 Pisum sativum HOM05D006044 ORTHO05D007653 6.3e-21 104.4 96 57.3
Solyc01g008360.3 Solanum lycopersicum HOM05D006044 ORTHO05D007653 6.3e-21 104.4 96 57.3
Sopen01g003880 Solanum pennellii HOM05D006044 ORTHO05D007653 6.3e-21 104.4 96 57.3
PGSC0003DMG400016393 Solanum tuberosum HOM05D006044 ORTHO05D007653 6.3e-21 104.4 96 57.3
TPR.G16400 Trifolium pratense HOM05D006044 ORTHO05D007653 6.3e-21 104.4 96 57.3
VMungo0647G0704 Vigna mungo HOM05D006044 ORTHO05D007653 6.3e-21 104.4 96 57.3
CSS0014603 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 8.2e-21 104.0 95 57.9
CDE08G0916 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 8.2e-21 104.0 99 56.6
Prupe.1G400800 Prunus persica HOM05D006044 ORTHO05D007653 8.2e-21 104.0 105 56.2
Atru.chr3.2998 Acer truncatum HOM05D006044 ORTHO05D007653 1.1e-20 103.6 96 57.3
Lsat_1_v5_gn_2_28381 Lactuca sativa HOM05D006044 ORTHO05D007653 1.1e-20 103.6 96 56.2
Potri.001G273200 Populus trichocarpa HOM05D006044 ORTHO05D007653 1.4e-20 103.2 96 57.3
ClCG02G022780 Citrullus lanatus HOM05D006044 ORTHO05D007653 1.8e-20 102.8 103 53.4
MELO3C014555.2 Cucumis melo HOM05D006044 ORTHO05D007653 1.8e-20 102.8 103 53.4
Nn7g36759 Nelumbo nucifera HOM05D006044 ORTHO05D007653 1.8e-20 102.8 96 57.3
TAR633G2719 Trochodendron aralioides HOM05D006044 ORTHO05D007653 1.8e-20 102.8 96 57.3
CDE09G0744 Ceratophyllum demersum HOM05D006044 ORTHO05D007653 2.4e-20 102.4 100 56.0
Ca_06201_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 2.4e-20 102.4 96 56.2
Gohir.A13G218400 Gossypium hirsutum HOM05D006044 ORTHO05D007653 2.4e-20 102.4 100 55.0
Gohir.D13G222100 Gossypium hirsutum HOM05D006044 ORTHO05D007653 2.4e-20 102.4 100 55.0
Gorai.013G253200 Gossypium raimondii HOM05D006044 ORTHO05D007653 2.4e-20 102.4 100 55.0
HanXRQChr07g0196181 Helianthus annuus HOM05D006044 ORTHO05D007653 2.4e-20 102.4 96 56.2
HanXRQChr14g0453721 Helianthus annuus HOM05D006044 ORTHO05D007653 2.4e-20 102.4 96 56.2
Lalb_Chr10g0106211 Lupinus albus HOM05D006044 ORTHO05D007653 2.4e-20 102.4 96 56.2
Lalb_Chr17g0347851 Lupinus albus HOM05D006044 ORTHO05D007653 2.4e-20 102.4 96 56.2
Ca_11896_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 3.1e-20 102.1 96 55.2
Hma1.2p1_0214F.1_g090800 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 3.1e-20 102.1 100 55.0
Hma1.2p1_1357F.1_g277915 Hydrangea macrophylla HOM05D006044 ORTHO05D007653 3.1e-20 102.1 100 55.0
LjContig00564g0010691 Lotus japonicus HOM05D006044 ORTHO05D007653 3.1e-20 102.1 96 56.2
THA.LOC104811201 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 3.1e-20 102.1 96 56.2
Thecc.09G247200 Theobroma cacao HOM05D006044 ORTHO05D007653 3.1e-20 102.1 96 56.2
Cfa009890 Carpinus fangiana HOM05D006044 ORTHO05D007653 4.1e-20 101.7 100 54.0
CiPaw.14G111700 Carya illinoinensis HOM05D006044 ORTHO05D007653 4.1e-20 101.7 100 54.0
COL.COLO4_24488 Corchorus olitorius HOM05D006044 ORTHO05D007653 4.1e-20 101.7 106 52.8
Haze_23252 Corylus avellana HOM05D006044 ORTHO05D007653 4.1e-20 101.7 100 54.0
Dinv09443 Davidia involucrata HOM05D006044 ORTHO05D007653 4.1e-20 101.7 95 56.8
Pp3c1_15740 Physcomitrium patens HOM05D006044 ORTHO05D007653 4.1e-20 101.7 95 57.9
Nn017s41474 Nelumbo nucifera HOM05D006044 ORTHO05D007653 5.3e-20 101.3 95 56.8
Potri.009G067500 Populus trichocarpa HOM05D006044 ORTHO05D007653 5.3e-20 101.3 94 56.4
ATR0763G184 Amborella trichopoda HOM05D006044 ORTHO05D007653 6.9e-20 100.9 96 56.2
QL01p016848 Quercus lobata HOM05D006044 ORTHO05D007653 6.9e-20 100.9 106 51.9
SEGI_07566 Sequoiadendron giganteum HOM05D006044 ORTHO05D007653 9.0e-20 100.5 100 55.0
THA.LOC104799136 Tarenaya hassleriana HOM05D006044 ORTHO05D007653 9.0e-20 100.5 96 55.2
Dinv37467 Davidia involucrata HOM05D006044 ORTHO05D007653 1.2e-19 100.1 95 55.8
Sabra09G0050500 Salix brachista HOM05D006044 ORTHO05D007653 1.2e-19 100.1 96 54.2
ECA238G3020 Erigeron canadensis HOM05D006044 ORTHO05D007653 1.5e-19 99.8 99 53.5
Mapoly0207s0011 Marchantia polymorpha HOM05D006044 ORTHO05D007653 1.5e-19 99.8 95 56.8
Sc12g0010240 Simmondsia chinensis HOM05D006044 ORTHO05D007653 1.5e-19 99.8 96 55.2
TWI75G0655 Tripterygium wilfordii HOM05D006044 ORTHO05D007653 1.5e-19 99.8 100 54.0
AagrBONN_evm.TU.Sc2ySwM_117.1592 Anthoceros agrestis HOM05D006044 ORTHO05D007653 2.6e-19 99.0 95 56.8
Ciclev10017186m.g Citrus clementina HOM05D006044 ORTHO05D007653 2.6e-19 99.0 95 54.7
Aa31LG3G15040 Aethionema arabicum HOM05D006044 ORTHO05D007653 3.4e-19 98.6 95 54.7
CBR_g501 Chara braunii HOM05D006044 ORTHO05D007653 4.5e-19 98.2 95 57.9
Rhsim13G0207900 Rhododendron simsii HOM05D006044 ORTHO05D007653 5.9e-19 97.8 100 53.0
Ah.05g173120 Amaranthus hybridus HOM05D006044 ORTHO05D007653 7.7e-19 97.4 100 52.0
Aqoxy2G00401 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 7.7e-19 97.4 96 54.2
BcaNung07015 Brassica carinata HOM05D006044 ORTHO05D007653 1.0e-18 97.1 99 52.5
A10p25610 Brassica napus HOM05D006044 ORTHO05D007653 1.0e-18 97.1 99 52.5
BolC9t59301H Brassica oleracea HOM05D004351 ORTHO05D005196 1.0e-18 97.1 99 52.5
BraA10t44628Z Brassica rapa HOM05D006044 ORTHO05D007653 1.0e-18 97.1 99 52.5
Eucgr.B03747 Eucalyptus grandis HOM05D006044 ORTHO05D007653 1.0e-18 97.1 95 53.7
MBI19_g20794_MAGBIO Magnolia biondii HOM05D006044 ORTHO05D007653 1.0e-18 97.1 96 54.2
PGR102G0082 Punica granatum HOM05D006044 ORTHO05D007653 1.0e-18 97.1 95 53.7
A03p05430 Brassica napus HOM05D006044 ORTHO05D007653 1.3e-18 96.7 99 52.5
C03p06320 Brassica napus HOM05D006044 ORTHO05D007653 1.3e-18 96.7 99 52.5
BolC3t13140H Brassica oleracea HOM05D006044 ORTHO05D007653 1.3e-18 96.7 99 52.5
BraA03t09881Z Brassica rapa HOM05D006044 ORTHO05D007653 1.3e-18 96.7 99 52.5
AUR62013740 Chenopodium quinoa HOM05D006044 ORTHO05D007653 1.3e-18 96.7 100 52.0
AUR62023411 Chenopodium quinoa HOM05D006044 ORTHO05D007653 1.3e-18 96.7 100 52.0
Thhalv10015024m.g Eutrema salsugineum HOM05D006044 ORTHO05D007653 1.3e-18 96.7 99 52.5
PSO339G3702 Papaver somniferum HOM05D006044 ORTHO05D007653 1.3e-18 96.7 96 54.2
PSO384G3308 Papaver somniferum HOM05D006044 ORTHO05D007653 1.3e-18 96.7 96 54.2
Sp6g31450 Schrenkiella parvula HOM05D006044 ORTHO05D007653 1.3e-18 96.7 99 52.5
EL10Ac1g00766 Beta vulgaris HOM05D006044 ORTHO05D007653 1.7e-18 96.3 100 52.0
EL10Ac5g12840 Beta vulgaris HOM05D006044 ORTHO05D007653 1.7e-18 96.3 100 52.0
BcaB01g05427 Brassica carinata HOM05D006044 ORTHO05D007653 1.7e-18 96.3 105 50.5
Carub.0006s1069 Capsella rubella HOM05D006044 ORTHO05D007653 8.5e-18 94.0 99 51.5
HPP92_019149 Vanilla planifolia HOM05D006044 ORTHO05D007653 8.5e-18 94.0 96 52.1
AL6G22970 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 2.5e-17 92.4 99 50.5
AT5G12190 Arabidopsis thaliana HOM05D006044 ORTHO05D007653 2.5e-17 92.4 99 50.5
CSS0031497 Camellia sinensis var. sinensis HOM05D006044 ORTHO05D007653 4.2e-17 91.7 104 50.0
Os03g0811700 Oryza sativa ssp. japonica HOM05D006044 ORTHO05D007653 4.2e-17 91.7 116 48.3
Zm00001eb062150 Zea mays HOM05D006044 ORTHO05D007653 1.6e-16 89.7 111 48.6
Zm00001eb212190 Zea mays HOM05D006044 ORTHO05D007653 2.1e-16 89.4 111 48.6
MD13G1049300 Malus domestica HOM05D006044 ORTHO05D007653 7.9e-16 87.4 87 52.9
SMO143G0133 Selaginella moellendorffii HOM05D006044 ORTHO05D007653 1.4e-15 86.7 94 50.0
Aqoxy2G00402 Aquilegia oxysepala HOM05D006044 ORTHO05D007653 2.3e-15 85.9 106 45.3
Ca_07394_v3 Cicer arietinum L. HOM05D006044 ORTHO05D007653 8.8e-15 84.0 91 49.5
CARHR200930 Cardamine hirsuta HOM05D006044 ORTHO05D007653 3.3e-14 82.0 99 45.5
EL10Ac9g21533 Beta vulgaris HOM05D006044 ORTHO05D007653 1.7e-13 79.7 60 65.0
AL3G46680 Arabidopsis lyrata HOM05D006044 ORTHO05D007653 2.8e-13 79.0 95 43.2
MCO15G700 Micromonas commoda HOM05D006044 ORTHO05D007653 6.3e-13 77.8 91 48.4
Cre03.g158950 Chlamydomonas reinhardtii HOM05D006044 ORTHO05D007653 1.2e-11 73.6 100 40.0
Duzib170G0372 Durio zibethinus HOM05D006044 ORTHO05D007653 1.1e-09 67.0 84 47.6
PRCOL_00006242 Prasinoderma coloniale HOM05D006044 ORTHO05D007653 1.1e-09 67.0 101 39.6
Haze_26695 Corylus avellana HOM05D006044 ORTHO05D007653 1.0e-07 60.5 80 36.2


User provided reference genes

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