Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold329G48874 Striga asiatica HOM05D005462 ORTHO05D006718 5.3e-248 861.7 942 100.0
Migut.F00860 Erythranthe guttata HOM05D005462 ORTHO05D006718 1.1e-107 395.6 343 63.3
MSTRG.27558 Avicennia marina HOM05D005462 ORTHO05D006718 1.6e-106 391.7 303 70.0
SalBow3G0159 Salvia bowleyana HOM05D005462 ORTHO05D006718 1.3e-105 388.7 314 67.2
Sopen11g002610 Solanum pennellii HOM05D005462 ORTHO05D006718 7.2e-96 356.3 343 58.6
Solyc11g006680.3 Solanum lycopersicum HOM05D005462 ORTHO05D006718 2.6e-93 347.8 343 56.9
Dinv08599 Davidia involucrata HOM05D005462 ORTHO05D006718 1.3e-92 345.5 347 56.5
Peaxi162Scf00125g00414 Petunia axillaris HOM05D005462 ORTHO05D006718 2.8e-92 344.4 874 70.0
PGSC0003DMG401007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 2.8e-92 344.4 343 57.4
Oeu033986.1 Olea europaea HOM05D005462 ORTHO05D006718 5.4e-91 340.1 345 58.0
Nitab4.5_0003787g0050 Nicotiana tabacum HOM05D005462 ORTHO05D006718 7.8e-90 336.3 880 60.6
CSS0018603 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 3.4e-85 320.9 345 54.2
ClCG05G021870 Citrullus lanatus HOM05D005462 ORTHO05D006718 7.5e-85 319.7 299 58.9
Hma1.2p1_0834F.1_g225780 Hydrangea macrophylla HOM05D005462 ORTHO05D006718 1.7e-84 318.5 307 57.7
Sc09g0005160 Simmondsia chinensis HOM05D005462 ORTHO05D006718 1.2e-82 312.4 315 55.6
ECA232G2701 Erigeron canadensis HOM05D005462 ORTHO05D006718 1.6e-82 312.0 338 53.0
TAR636G3557 Trochodendron aralioides HOM05D005462 ORTHO05D006718 4.6e-82 310.5 347 53.9
Sed0013359 Sechium edule HOM05D005462 ORTHO05D006718 6.6e-81 306.6 297 59.6
Actinidia03844 Actinidia chinensis HOM05D005462 ORTHO05D006718 8.6e-81 306.2 376 48.4
Nn2g14251 Nelumbo nucifera HOM05D005462 ORTHO05D006718 2.5e-80 304.7 352 50.6
HanXRQChr11g0321421 Helianthus annuus HOM05D005462 ORTHO05D006718 5.6e-80 303.5 352 48.9
PGR142G1862 Punica granatum HOM05D005462 ORTHO05D006718 9.5e-80 302.8 303 54.8
PSO384G2581 Papaver somniferum HOM05D005462 ORTHO05D006718 1.2e-79 302.4 316 52.5
Ah.04g150500 Amaranthus hybridus HOM05D005462 ORTHO05D006718 8.0e-79 299.7 292 57.2
Ciclev10014488m.g Citrus clementina HOM05D005462 ORTHO05D006718 1.4e-78 298.9 349 52.4
EL10Ac3g07337 Beta vulgaris HOM05D005462 ORTHO05D006718 1.8e-78 298.5 292 56.8
Hund06792 Selenicereus undatus HOM05D005462 ORTHO05D006718 2.3e-78 298.1 266 57.5
CsaV3_5G035270 Cucumis sativus L. HOM05D005462 ORTHO05D006718 8.9e-78 296.2 291 57.0
Atru.chr12.1058 Acer truncatum HOM05D005462 ORTHO05D006718 1.5e-77 295.4 290 57.2
Duzib128G2019 Durio zibethinus HOM05D005462 ORTHO05D006718 3.4e-77 294.3 328 54.6
PSO339G2458 Papaver somniferum HOM05D005462 ORTHO05D006718 3.4e-77 294.3 320 51.9
COL.COLO4_07193 Corchorus olitorius HOM05D005462 ORTHO05D006718 4.4e-77 293.9 325 52.6
THA.LOC104823152 Tarenaya hassleriana HOM05D005462 ORTHO05D006718 5.8e-77 293.5 361 48.5
Cpa.g.sc54.12 Carica papaya HOM05D005462 ORTHO05D006718 7.5e-77 293.1 234 64.5
Ca_13242_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 2.2e-76 291.6 265 57.4
Ca_30156_v3 Cicer arietinum L. HOM05D005462 ORTHO05D006718 2.2e-76 291.6 265 57.4
Prupe.2G071400 Prunus persica HOM05D005462 ORTHO05D006718 2.2e-76 291.6 354 46.6
MD07G1061700 Malus domestica HOM05D005462 ORTHO05D006718 4.9e-76 290.4 359 46.5
Potri.008G017400 Populus trichocarpa HOM05D005462 ORTHO05D006718 6.4e-76 290.0 275 57.5
MELO3C012341.2 Cucumis melo HOM05D005462 ORTHO05D006718 1.9e-75 288.5 297 55.6
EL10Ac3g07311 Beta vulgaris HOM05D005462 ORTHO05D006718 5.4e-75 287.0 304 54.6
Eucgr.G02683 Eucalyptus grandis HOM05D005462 ORTHO05D006718 5.4e-75 287.0 306 53.9
Aqoxy4G02697 Aquilegia oxysepala HOM05D005462 ORTHO05D006718 9.2e-75 286.2 282 54.3
Thecc.10G115600 Theobroma cacao HOM05D005462 ORTHO05D006718 3.5e-74 284.3 310 55.5
PGSC0003DMG400016997 Solanum tuberosum HOM05D005462 ORTHO05D006718 4.6e-74 283.9 289 55.4
Sabra08G0010900 Salix brachista HOM05D005462 ORTHO05D006718 6.0e-74 283.5 254 57.1
Lj6g0019256 Lotus japonicus HOM05D005462 ORTHO05D006718 7.8e-74 283.1 241 59.8
TWI15G0792 Tripterygium wilfordii HOM05D005462 ORTHO05D006718 1.3e-73 282.3 279 56.3
ATR0772G220 Amborella trichopoda HOM05D005462 ORTHO05D006718 1.7e-73 282.0 305 54.1
FAN06G4410 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.3e-73 281.6 353 49.0
FvH4_7g06690 Fragaria vesca HOM05D005462 ORTHO05D006718 3.9e-73 280.8 352 48.9
TPR.G19815 Trifolium pratense HOM05D005462 ORTHO05D006718 3.9e-73 280.8 244 57.4
Cfa010538 Carpinus fangiana HOM05D005462 ORTHO05D006718 6.6e-73 280.0 336 50.9
Gohir.D13G010200 Gossypium hirsutum HOM05D005462 ORTHO05D006718 6.6e-73 280.0 305 53.8
DCAR_028403 Daucus carota HOM05D005462 ORTHO05D006718 8.6e-73 279.6 296 51.4
Gohir.A13G009500 Gossypium hirsutum HOM05D005462 ORTHO05D006718 8.6e-73 279.6 255 60.4
MBI01_g28354_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 8.6e-73 279.6 249 58.2
CANSAT56G2776 Cannabis sativa HOM05D005462 ORTHO05D006718 1.1e-72 279.3 348 45.7
Gorai.013G010900 Gossypium raimondii HOM05D005462 ORTHO05D006718 1.1e-72 279.3 305 53.8
Medtr1g048080 Medicago truncatula HOM05D005462 ORTHO05D006718 1.5e-72 278.9 355 46.5
RcHm_v2.0_Chr1g0336351 Rosa chinensis HOM05D005462 ORTHO05D006718 1.5e-72 278.9 274 55.8
AUR62021021 Chenopodium quinoa HOM05D005462 ORTHO05D006718 2.5e-72 278.1 263 58.9
C09p72080 Brassica napus HOM05D005462 ORTHO05D006718 3.3e-72 277.7 308 54.2
Aa31LG11G5620 Aethionema arabicum HOM05D005462 ORTHO05D000003 7.3e-72 276.6 292 54.1
Carub.0006s0369 Capsella rubella HOM05D005462 ORTHO05D006718 9.5e-72 276.2 367 46.0
VMungo0720G0270 Vigna mungo HOM05D005462 ORTHO05D006718 1.6e-71 275.4 303 49.5
EL10Ac3g07314 Beta vulgaris HOM05D005462 ORTHO05D006718 8.1e-71 273.1 288 54.2
CiPaw.13G042600 Carya illinoinensis HOM05D005462 ORTHO05D006718 8.1e-71 273.1 249 59.0
FAN10G0457 Fragaria x ananassa HOM05D005462 ORTHO05D006718 8.1e-71 273.1 301 52.8
Glyma.20G074200 Glycine max HOM05D005462 ORTHO05D006718 8.1e-71 273.1 276 52.5
AL6G14460 Arabidopsis lyrata HOM05D005462 ORTHO05D006718 1.1e-70 272.7 308 51.3
Sp6g38020 Schrenkiella parvula HOM05D005462 ORTHO05D006718 1.4e-70 272.3 358 47.5
Potri.010G241300 Populus trichocarpa HOM05D005462 ORTHO05D006718 1.8e-70 271.9 350 48.3
Manes.07G085300 Manihot esculenta HOM05D005462 ORTHO05D006718 4.0e-70 270.8 195 66.2
A10p31410 Brassica napus HOM05D005462 ORTHO05D006718 5.2e-70 270.4 308 54.9
BraA10t45187Z Brassica rapa HOM05D005462 ORTHO05D006718 6.8e-70 270.0 311 53.7
GSVIVG01034651001 Vitis vinifera HOM05D005462 ORTHO05D006718 8.9e-70 269.6 342 47.1
FAN03G2522 Fragaria x ananassa HOM05D005462 ORTHO05D006718 2.0e-69 268.5 350 47.1
arahy.Tifrunner.gnm1.ann1.LTKS6Y Arachis hypogaea HOM05D005462 ORTHO05D006718 3.4e-69 267.7 342 48.5
Thhalv10012596m.g Eutrema salsugineum HOM05D005462 ORTHO05D006718 3.4e-69 267.7 244 58.2
Solyc04g009720.1 Solanum lycopersicum HOM05D005462 ORTHO05D006718 5.8e-69 266.9 271 57.2
arahy.Tifrunner.gnm1.ann1.D9T4RB Arachis hypogaea HOM05D005462 ORTHO05D006718 2.2e-68 265.0 340 48.2
Sopen04g004840 Solanum pennellii HOM05D005462 ORTHO05D006718 2.2e-68 265.0 290 53.8
AT5G04810 Arabidopsis thaliana HOM05D005462 ORTHO05D006718 6.4e-68 263.5 282 52.5
Phvul.007G234900 Phaseolus vulgaris HOM05D005462 ORTHO05D006718 9.2e-67 259.6 295 48.8
QL04p046981 Quercus lobata HOM05D005462 ORTHO05D006718 1.6e-66 258.8 278 54.3
BolC9t59953H Brassica oleracea HOM05D005462 ORTHO05D006718 2.1e-66 258.5 300 53.0
BcaC06g32185 Brassica carinata HOM05D005462 ORTHO05D006718 4.6e-66 257.3 267 55.1
Lalb_Chr01g0010721 Lupinus albus HOM05D005462 ORTHO05D006718 7.8e-66 256.5 295 51.5
SEGI_04507 Sequoiadendron giganteum HOM05D005462 ORTHO05D006718 6.2e-63 246.9 321 44.9
Os04g0684500 Oryza sativa ssp. japonica HOM05D005462 ORTHO05D006718 2.9e-60 238.0 244 50.4
CAN.G143.13 Capsicum annuum HOM05D005462 ORTHO05D006718 7.1e-59 233.4 151 74.2
CAN.G186.57 Capsicum annuum HOM05D005462 ORTHO05D006718 2.1e-58 231.9 190 61.6
Zm00001eb434090 Zea mays HOM05D005462 ORTHO05D006718 5.6e-56 223.8 298 45.0
AUR62018420 Chenopodium quinoa HOM05D005462 ORTHO05D006718 7.3e-56 223.4 344 44.8
Lj2C34T7 Lonicera japonica HOM05D005462 ORTHO05D006718 2.7e-50 204.9 145 70.3
arahy.Tifrunner.gnm1.ann1.1Q3Q3C Arachis hypogaea HOM05D005462 ORTHO05D006718 7.8e-50 203.4 153 65.4
HPP92_013816 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.0e-49 201.4 168 58.9
Haze_03474 Corylus avellana HOM05D005462 ORTHO05D006718 1.1e-48 199.5 292 43.2
Sabra10G0188800 Salix brachista HOM05D005462 ORTHO05D006718 2.5e-48 198.4 751 70.7
Cc02_g09510 Coffea canephora HOM05D005462 ORTHO05D006718 5.8e-45 187.2 132 71.2
Lsat_1_v5_gn_9_47180 Lactuca sativa HOM05D005462 ORTHO05D006718 9.3e-43 179.9 204 48.5
AagrBONN_evm.TU.Sc2ySwM_362.2024 Anthoceros agrestis HOM05D005462 ORTHO05D006718 2.3e-41 175.3 209 42.1
Pp3c16_280 Physcomitrium patens HOM05D005462 ORTHO05D006718 1.3e-36 159.5 187 40.6
Peaxi162Scf00195g01111 Petunia axillaris HOM05D005462 ORTHO05D006718 1.1e-35 156.4 203 45.3
Pp3c5_10110 Physcomitrium patens HOM05D005462 ORTHO05D006718 2.1e-34 152.1 193 40.9
SMO165G0125 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 2.1e-34 152.1 184 42.9
SMO272G0004 Selaginella moellendorffii HOM05D005462 ORTHO05D006718 6.0e-34 150.6 184 42.9
Mapoly0061s0009 Marchantia polymorpha HOM05D005462 ORTHO05D006718 2.5e-32 145.2 207 38.6
CSS0015574 Camellia sinensis var. sinensis HOM05D005462 ORTHO05D006718 1.4e-27 129.4 99 64.6
Cpa.g.sc1114.1 Carica papaya HOM05D005462 ORTHO05D006718 2.5e-27 128.6 96 61.5
MBI01_g28355_MAGBIO Magnolia biondii HOM05D005462 ORTHO05D006718 5.5e-27 127.5 75 73.3
HPP92_027470 Vanilla planifolia HOM05D005462 ORTHO05D006718 5.5e-27 127.5 74 78.4
Nitab4.5_0001047g0040 Nicotiana tabacum HOM05D000001 ORTHO05D000003 7.1e-27 127.1 104 60.6
PGSC0003DMG402007600 Solanum tuberosum HOM05D005462 ORTHO05D006718 9.3e-27 126.7 105 61.0
Oeu033283.1 Olea europaea HOM05D005462 ORTHO05D006718 2.1e-26 125.6 210 44.3
Lsat_1_v5_gn_9_53421 Lactuca sativa HOM05D005462 ORTHO05D006718 3.5e-26 124.8 89 62.9
HanXRQChr11g0321471 Helianthus annuus HOM05D005462 ORTHO05D006718 4.6e-26 124.4 103 57.3
Oeu033987.1 Olea europaea HOM05D005462 ORTHO05D006718 4.6e-26 124.4 96 63.5
HPP92_027471 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.6e-26 124.4 76 71.1
CDE06G1106 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 7.9e-26 123.6 100 60.0
Psat0s3982g0040 Pisum sativum HOM05D005462 ORTHO05D006718 1.3e-25 122.9 105 56.2
CBR_g70711 Chara braunii HOM05D005462 ORTHO05D006718 1.9e-24 119.0 218 36.2
Glyma.10G122100 Glycine max HOM05D005462 ORTHO05D006718 1.9e-24 119.0 99 57.6
Solyc04g009730.4 Solanum lycopersicum HOM05D005462 ORTHO05D006718 6.3e-23 114.0 98 56.1
CARHR208470 Cardamine hirsuta HOM05D005462 ORTHO05D006718 8.2e-23 113.6 90 55.6
HPP92_027469 Vanilla planifolia HOM05D005462 ORTHO05D006718 3.1e-22 111.7 74 64.9
vmacro07266 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 1.9e-19 102.4 120 51.7
CDE06G0092 Ceratophyllum demersum HOM05D005462 ORTHO05D006718 4.2e-19 101.3 281 57.3
vmacro05136 Vaccinium macrocarpon HOM05D005462 ORTHO05D006718 1.2e-18 99.8 72 66.7
Haze_03485 Corylus avellana HOM05D005462 ORTHO05D006718 6.9e-14 84.0 46 82.6
BolC9t55910H Brassica oleracea HOM05D003366 ORTHO05D004045 9.4e-11 73.6 74 50.0
HPP92_013817 Vanilla planifolia HOM05D005462 ORTHO05D006718 4.7e-10 71.2 43 67.4
Carub.0002s2389 Capsella rubella HOM05D005462 ORTHO05D006718 3.0e-09 68.6 43 74.4
Carub.0006s3020 Capsella rubella HOM05D005462 ORTHO05D006718 3.0e-09 68.6 43 74.4
C09p30460 Brassica napus HOM05D003366 ORTHO05D004045 5.1e-09 67.8 63 46.0
CsaV3_1G017360 Cucumis sativus L. HOM05D005462 ORTHO05D006718 6.7e-09 67.4 45 71.1
CBR_g46449 Chara braunii HOM05D002004 ORTHO05D002089 2.0e-08 65.9 152 28.9
ATR0304G030 Amborella trichopoda HOM05D000142 ORTHO05D010028 2.8e-07 62.0 90 40.0


User provided reference genes

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