Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
SGA_v2.0_scaffold318G48475 Striga asiatica HOM05D006401 ORTHO05D007864 1.1e-272 942.6 458 100.0
MSTRG.5961 Avicennia marina HOM05D006401 ORTHO05D007864 5.0e-175 618.2 468 67.5
Migut.J00842 Erythranthe guttata HOM05D006401 ORTHO05D007864 3.6e-173 612.1 459 67.5
SalBow6G4903 Salvia bowleyana HOM05D006401 ORTHO05D007864 1.0e-148 530.8 459 63.0
Dinv12612 Davidia involucrata HOM05D006401 ORTHO05D007864 4.1e-145 518.8 459 59.3
Nitab4.5_0008632g0020 Nicotiana tabacum HOM05D006401 ORTHO05D007864 7.0e-145 518.1 461 58.8
Sopen07g005990 Solanum pennellii HOM05D006401 ORTHO05D007864 7.0e-145 518.1 453 60.0
Cc00_g00110 Coffea canephora HOM05D006401 ORTHO05D007864 1.9e-142 510.0 444 58.1
Sed0005150 Sechium edule HOM05D006401 ORTHO05D007864 3.4e-139 499.2 442 58.6
QL11p008681 Quercus lobata HOM05D006401 ORTHO05D007864 5.7e-139 498.4 457 57.5
Nitab4.5_0000899g0070 Nicotiana tabacum HOM05D006401 ORTHO05D007864 2.8e-138 496.1 466 56.7
CsaV3_1G004580 Cucumis sativus L. HOM05D006401 ORTHO05D007864 8.3e-138 494.6 463 57.9
Nn8g41133 Nelumbo nucifera HOM05D006401 ORTHO05D007864 8.3e-138 494.6 454 57.0
TAR626G0078 Trochodendron aralioides HOM05D006401 ORTHO05D007864 8.3e-138 494.6 452 56.6
Hma1.2p1_0314F.1_g122060 Hydrangea macrophylla HOM05D006401 ORTHO05D007864 7.0e-137 491.5 462 57.6
Actinidia02474 Actinidia chinensis HOM05D006401 ORTHO05D007864 1.6e-136 490.3 462 56.5
GSVIVG01013042001 Vitis vinifera HOM05D006401 ORTHO05D007864 1.6e-136 490.3 452 58.2
Thecc.09G196700 Theobroma cacao HOM05D006401 ORTHO05D007864 3.8e-135 485.7 458 56.8
Potri.018G147400 Populus trichocarpa HOM05D006401 ORTHO05D007864 5.0e-135 485.3 454 56.4
Lj4g0001613 Lotus japonicus HOM05D006401 ORTHO05D007864 1.9e-134 483.4 446 56.7
Glyma.08G027300 Glycine max HOM05D006401 ORTHO05D007864 2.5e-134 483.0 431 56.1
Manes.02G221700 Manihot esculenta HOM05D006401 ORTHO05D007864 1.2e-133 480.7 441 55.6
MBI13_g31574_MAGBIO Magnolia biondii HOM05D006401 ORTHO05D007864 2.1e-133 479.9 456 54.8
CANSAT80G2545 Cannabis sativa HOM05D006401 ORTHO05D007864 8.0e-133 478.0 448 56.5
Ca_17430_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 1.0e-132 477.6 433 58.0
Ca_17439_v3 Cicer arietinum L. HOM05D006401 ORTHO05D007864 1.0e-132 477.6 433 58.0
Phvul.002G302500 Phaseolus vulgaris HOM05D006401 ORTHO05D007864 1.4e-132 477.2 443 56.2
arahy.Tifrunner.gnm1.ann1.IH6H8X Arachis hypogaea HOM05D006401 ORTHO05D007864 8.9e-132 474.6 463 56.2
Rhsim03G0113000 Rhododendron simsii HOM05D006401 ORTHO05D007864 1.2e-131 474.2 436 56.9
Sc23g0004370 Simmondsia chinensis HOM05D006401 ORTHO05D007864 2.6e-131 473.0 445 56.9
VMungo0251G1477 Vigna mungo HOM05D006401 ORTHO05D007864 4.4e-131 472.2 482 52.3
PGR044G1973 Punica granatum HOM05D006401 ORTHO05D007864 1.7e-130 470.3 458 55.9
arahy.Tifrunner.gnm1.ann1.Y2X24R Arachis hypogaea HOM05D006401 ORTHO05D007864 2.2e-130 469.9 463 55.1
MD13G1232500 Malus domestica HOM05D006401 ORTHO05D007864 2.2e-130 469.9 436 56.0
Aqoxy7G02629 Aquilegia oxysepala HOM05D006401 ORTHO05D007864 4.9e-130 468.8 454 56.2
HanXRQChr10g0309551 Helianthus annuus HOM05D006401 ORTHO05D007864 8.3e-130 468.0 449 54.6
ECA236G1652 Erigeron canadensis HOM05D006401 ORTHO05D007864 1.8e-129 466.8 446 55.2
CDE05G1304 Ceratophyllum demersum HOM05D006401 ORTHO05D007864 4.1e-129 465.7 448 54.2
Gorai.012G097600 Gossypium raimondii HOM05D006401 ORTHO05D007864 9.2e-129 464.5 460 54.1
Lsat_1_v5_gn_5_80461 Lactuca sativa HOM05D006401 ORTHO05D007864 9.2e-129 464.5 433 57.0
Sabra18G0128800 Salix brachista HOM05D006401 ORTHO05D007864 1.2e-128 464.2 493 52.1
Medtr8g101250 Medicago truncatula HOM05D006401 ORTHO05D007864 1.3e-127 460.7 440 55.5
Ciclev10008288m.g Citrus clementina HOM05D006401 ORTHO05D007864 3.0e-127 459.5 465 54.4
Gohir.A04G052200 Gossypium hirsutum HOM05D006401 ORTHO05D007864 3.0e-127 459.5 458 53.7
PSO063G4133 Papaver somniferum HOM05D006401 ORTHO05D007864 3.9e-127 459.1 447 54.8
Sabra18G0121600 Salix brachista HOM05D006401 ORTHO05D007864 3.9e-127 459.1 491 52.1
PSO170G1271 Papaver somniferum HOM05D006401 ORTHO05D007864 5.0e-127 458.8 461 53.4
RcHm_v2.0_Chr4g0397611 Rosa chinensis HOM05D006401 ORTHO05D007864 6.6e-127 458.4 438 55.7
Ah.11g043600 Amaranthus hybridus HOM05D006401 ORTHO05D007864 3.3e-126 456.1 451 55.0
FAN22G1023 Fragaria x ananassa HOM05D006401 ORTHO05D007864 3.3e-126 456.1 438 54.8
Lalb_Chr05g0223791 Lupinus albus HOM05D006401 ORTHO05D007864 4.3e-126 455.7 432 56.0
FAN12G0292 Fragaria x ananassa HOM05D006401 ORTHO05D007864 1.2e-125 454.1 442 54.1
FvH4_4g06050 Fragaria vesca HOM05D006401 ORTHO05D007864 1.1e-124 451.1 438 54.3
EL10Ac2g03627 Beta vulgaris HOM05D006401 ORTHO05D007864 5.2e-124 448.7 453 53.0
THA.LOC104826573 Tarenaya hassleriana HOM05D006401 ORTHO05D007864 3.4e-123 446.0 452 53.3
Prupe.1G064000 Prunus persica HOM05D006401 ORTHO05D007864 7.5e-123 444.9 435 54.3
CSS0033991 Camellia sinensis var. sinensis HOM05D006401 ORTHO05D007864 2.2e-122 443.4 451 53.7
AUR62020726 Chenopodium quinoa HOM05D006401 ORTHO05D007864 2.2e-122 443.4 448 53.3
AT5G35400 Arabidopsis thaliana HOM05D006401 ORTHO05D007864 8.3e-122 441.4 439 53.8
Glyma.05G220800 Glycine max HOM05D006401 ORTHO05D007864 8.3e-122 441.4 408 55.9
Cpa.g.sc115.22 Carica papaya HOM05D006401 ORTHO05D007864 9.2e-121 438.0 417 56.6
COL.COLO4_23416 Corchorus olitorius HOM05D006401 ORTHO05D007864 9.2e-121 438.0 413 56.4
Sp7g07040 Schrenkiella parvula HOM05D006401 ORTHO05D007864 1.2e-120 437.6 440 54.5
BcaC07g37665 Brassica carinata HOM05D006401 ORTHO05D007864 2.7e-120 436.4 435 54.9
AL7G44200 Arabidopsis lyrata HOM05D006401 ORTHO05D007864 3.5e-120 436.0 439 53.1
Carub.0007s3123 Capsella rubella HOM05D006401 ORTHO05D007864 3.5e-120 436.0 440 53.2
A08p09710 Brassica napus HOM05D006401 ORTHO05D007864 1.7e-119 433.7 434 55.1
Thhalv10003453m.g Eutrema salsugineum HOM05D006401 ORTHO05D007864 1.1e-118 431.0 443 54.4
FAN17G0150 Fragaria x ananassa HOM05D006401 ORTHO05D007864 1.1e-118 431.0 422 54.7
AUR62027987 Chenopodium quinoa HOM05D006401 ORTHO05D007864 4.3e-118 429.1 441 52.6
Zm00001eb274430 Zea mays HOM05D006401 ORTHO05D007864 9.5e-118 427.9 445 51.2
BolC8t48034H Brassica oleracea HOM05D006401 ORTHO05D007864 4.0e-116 422.5 467 51.6
Duzib170G0999 Durio zibethinus HOM05D006401 ORTHO05D007864 4.0e-116 422.5 441 52.2
BraA08t32967Z Brassica rapa HOM05D006401 ORTHO05D007864 5.2e-116 422.2 460 52.4
BcaB04g18045 Brassica carinata HOM05D006401 ORTHO05D007864 6.8e-116 421.8 437 53.5
MELO3C017384.2 Cucumis melo HOM05D006401 ORTHO05D007864 8.9e-116 421.4 489 50.7
Aa31LG8G10590 Aethionema arabicum HOM05D006401 ORTHO05D007864 9.9e-115 417.9 436 52.3
CiPaw.16G104000 Carya illinoinensis HOM05D006401 ORTHO05D007864 1.7e-111 407.1 356 59.8
ClCG06G014090 Citrullus lanatus HOM05D006401 ORTHO05D007864 2.4e-105 386.7 413 52.3
SHI03133 Sapria himalayana HOM05D006401 ORTHO05D007864 2.1e-104 383.6 419 52.0
ATR0626G158 Amborella trichopoda HOM05D006401 ORTHO05D007864 4.6e-104 382.5 396 53.5
TPR.G32971 Trifolium pratense HOM05D006401 ORTHO05D007864 8.7e-103 378.3 387 53.5
Hund19359 Selenicereus undatus HOM05D006401 ORTHO05D007864 2.3e-95 353.6 438 45.9
Psat7g020960 Pisum sativum HOM05D006401 ORTHO05D007864 3.4e-91 339.7 352 52.0
Gohir.D04G087600 Gossypium hirsutum HOM05D006401 ORTHO05D007864 1.1e-89 334.7 369 48.8
Atru.chr7.892 Acer truncatum HOM05D006401 ORTHO05D007864 5.3e-84 315.8 337 49.6
CARHR217420 Cardamine hirsuta HOM05D006401 ORTHO05D007864 7.6e-83 312.0 326 53.7
Cfa020752 Carpinus fangiana HOM05D006401 ORTHO05D007864 3.5e-80 303.1 332 50.3
DCAR_010674 Daucus carota HOM05D006401 ORTHO05D007864 1.9e-78 297.4 326 50.6
Lju50A23T26 Lonicera japonica HOM05D006401 ORTHO05D007864 2.5e-78 297.0 278 56.8
SMO232G0120 Selaginella moellendorffii HOM05D006401 ORTHO05D007864 4.2e-65 253.1 351 43.6
CBR_g44387 Chara braunii HOM05D000019 ORTHO05D000002 3.1e-60 236.9 536 34.3
CAN.G146.3 Capsicum annuum HOM05D006401 ORTHO05D007864 1.2e-59 235.0 397 39.0
Eucgr.C02172 Eucalyptus grandis HOM05D006401 ORTHO05D007864 5.9e-59 232.6 226 51.8
Haze_19099 Corylus avellana HOM05D006401 ORTHO05D007864 2.2e-58 230.7 332 41.3
Solyc07g017260.2 Solanum lycopersicum HOM05D006401 ORTHO05D007864 2.2e-58 230.7 186 60.8
PGSC0003DMG401009562 Solanum tuberosum HOM05D006401 ORTHO05D007864 3.2e-57 226.9 200 57.5
HPP92_019927 Vanilla planifolia HOM05D006401 ORTHO05D007864 1.2e-56 224.9 216 54.6
Lj9A5T15 Lonicera japonica HOM05D006401 ORTHO05D007864 3.0e-55 220.3 216 56.9
SEGI_02756 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 5.1e-55 219.5 253 49.8
CDE05G1402 Ceratophyllum demersum HOM05D000163 ORTHO05D007864 6.1e-48 196.1 300 45.0
Os06g0663100 Oryza sativa ssp. japonica HOM05D006401 ORTHO05D007864 1.0e-47 195.3 164 56.1
Oeu036951.3 Olea europaea HOM05D006401 ORTHO05D007864 7.4e-46 189.1 341 40.8
SEGI_34102 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 1.2e-40 171.8 156 59.0
Solyc07g017250.4 Solanum lycopersicum HOM05D006401 ORTHO05D007864 2.2e-37 161.0 179 49.2
FAN07G0669 Fragaria x ananassa HOM05D006401 ORTHO05D007864 6.3e-37 159.5 150 58.0
Oeu021025.1 Olea europaea HOM05D006401 ORTHO05D007864 3.1e-36 157.1 106 69.8
Lju50A23T28 Lonicera japonica HOM05D006401 ORTHO05D007864 6.5e-34 149.4 102 67.6
SEGI_28851 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 9.4e-33 145.6 136 58.1
TPR.G25454 Trifolium pratense HOM05D006401 ORTHO05D007864 4.7e-32 143.3 82 81.7
PGSC0003DMG402009562 Solanum tuberosum HOM05D006401 ORTHO05D007864 1.5e-30 138.3 77 88.3
MCO14G313 Micromonas commoda HOM05D006401 ORTHO05D007864 6.3e-29 132.9 494 28.7
SEGI_09852 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 8.6e-26 122.5 184 45.7
SEGI_04184 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 4.9e-21 106.7 102 53.9
Aa31sc608G30 Aethionema arabicum HOM05D006401 ORTHO05D007864 2.7e-19 100.9 73 71.2
Oeu021024.1 Olea europaea HOM05D006401 ORTHO05D007864 1.5e-17 95.1 80 58.8
Cre01.g021900 Chlamydomonas reinhardtii HOM05D006401 ORTHO05D007864 1.2e-16 92.0 573 23.6
Nn8g41111 Nelumbo nucifera HOM05D006401 ORTHO05D007864 2.1e-16 91.3 67 61.2
Lsat_1_v5_gn_1_39980 Lactuca sativa HOM05D006708 ORTHO05D008321 1.1e-09 68.9 156 34.0
SMO361G0559 Selaginella moellendorffii HOM05D006708 ORTHO05D008321 1.5e-09 68.6 142 33.1
MELO3C009013.2 Cucumis melo HOM05D006401 ORTHO05D007864 1.9e-09 68.2 47 70.2
SEGI_39788 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 2.5e-09 67.8 48 72.9
HanXRQChr10g0293331 Helianthus annuus HOM05D006708 ORTHO05D008321 5.6e-09 66.6 134 34.3
Lj4g0015836 Lotus japonicus HOM05D006708 ORTHO05D008321 5.6e-09 66.6 133 36.8
SEGI_17053 Sequoiadendron giganteum HOM05D006401 ORTHO05D007864 5.6e-09 66.6 91 38.5
Pp3c21_5420 Physcomitrium patens HOM05D006708 ORTHO05D008321 2.1e-08 64.7 145 32.4
Rhsim12G0000100 Rhododendron simsii HOM05D006708 ORTHO05D007921 2.1e-08 64.7 381 25.7
HPP92_001944 Vanilla planifolia HOM05D006708 ORTHO05D008321 2.8e-08 64.3 161 30.4
CANSAT64G0974 Cannabis sativa HOM05D006708 ORTHO05D008321 6.2e-08 63.2 134 36.6
Lj6A702T41 Lonicera japonica HOM05D006708 ORTHO05D008321 1.1e-07 62.4 154 31.2
Sc19g0002530 Simmondsia chinensis HOM05D006708 ORTHO05D008321 1.4e-07 62.0 134 35.8
Solyc05g053190.3 Solanum lycopersicum HOM05D006708 ORTHO05D008321 1.8e-07 61.6 162 29.6
CAN.G305.34 Capsicum annuum HOM05D006708 ORTHO05D008321 2.3e-07 61.2 133 33.1
VMungo0464G1025 Vigna mungo HOM05D006401 ORTHO05D007864 2.3e-07 61.2 59 54.2
Nn3g21927 Nelumbo nucifera HOM05D006708 ORTHO05D008321 3.1e-07 60.8 133 31.6
QL06p014362 Quercus lobata HOM05D006708 ORTHO05D008321 3.1e-07 60.8 144 32.6
PGSC0003DMG400027203 Solanum tuberosum HOM05D006708 ORTHO05D008321 3.1e-07 60.8 134 35.1
SGA_v2.0_scaffold109G31012 Striga asiatica HOM05D006708 ORTHO05D008321 3.1e-07 60.8 140 32.9
Dinv29501 Davidia involucrata HOM05D006708 ORTHO05D008321 4.0e-07 60.5 162 32.7
Dinv07482 Davidia involucrata HOM05D007027 ORTHO05D008765 5.2e-07 60.1 139 30.9
Peaxi162Scf00164g00315 Petunia axillaris HOM05D006708 ORTHO05D008321 5.2e-07 60.1 148 30.4
Glyma.17G041000 Glycine max HOM05D006708 ORTHO05D008321 8.9e-07 59.3 136 35.3
PSO210G5816 Papaver somniferum HOM05D006708 ORTHO05D008321 8.9e-07 59.3 134 35.1
Prupe.1G104700 Prunus persica HOM05D006708 ORTHO05D008321 8.9e-07 59.3 185 30.3
Duzib132G0056 Durio zibethinus HOM05D007027 ORTHO05D008765 1.2e-06 58.9 137 29.9
Glyma.13G119200 Glycine max HOM05D006708 ORTHO05D008321 1.2e-06 58.9 136 35.3
MSTRG.24854 Avicennia marina HOM05D006708 ORTHO05D008321 1.5e-06 58.5 134 33.6
Hma1.2p1_0013F.1_g007850 Hydrangea macrophylla HOM05D006708 ORTHO05D008321 1.5e-06 58.5 133 31.6
SalBow2G2621 Salvia bowleyana HOM05D006708 ORTHO05D008321 1.5e-06 58.5 132 34.8
Hund22645 Selenicereus undatus HOM05D006708 ORTHO05D008321 1.5e-06 58.5 134 35.8
Migut.A01089 Erythranthe guttata HOM05D006708 ORTHO05D008321 2.0e-06 58.2 136 34.6
PSO761G0290 Papaver somniferum HOM05D006708 ORTHO05D008321 2.0e-06 58.2 134 34.3
Sp3g05900 Schrenkiella parvula HOM05D006708 ORTHO05D008321 2.0e-06 58.2 364 23.9
Sopen05g031700 Solanum pennellii HOM05D006708 ORTHO05D008321 2.0e-06 58.2 134 32.8
THA.LOC104802685 Tarenaya hassleriana HOM05D006708 ORTHO05D008321 2.0e-06 58.2 155 29.7
Zm00001eb245280 Zea mays HOM05D006708 ORTHO05D008321 2.0e-06 58.2 136 33.1
Oeu022711.1 Olea europaea HOM05D006708 ORTHO05D008321 2.6e-06 57.8 133 30.1
Aa31LG5G17510 Aethionema arabicum HOM05D006708 ORTHO05D008321 3.4e-06 57.4 133 30.8
arahy.Tifrunner.gnm1.ann1.H7T0W5 Arachis hypogaea HOM05D006708 ORTHO05D008321 3.4e-06 57.4 136 35.3
arahy.Tifrunner.gnm1.ann1.YU479Z Arachis hypogaea HOM05D006708 ORTHO05D008321 3.4e-06 57.4 136 35.3
Cc03_g00080 Coffea canephora HOM05D006708 ORTHO05D008321 3.4e-06 57.4 133 31.6
Actinidia02537 Actinidia chinensis HOM05D006708 ORTHO05D008321 4.4e-06 57.0 134 31.3
Gohir.A01G183800 Gossypium hirsutum HOM05D007027 ORTHO05D008765 4.4e-06 57.0 136 29.4
Phvul.003G122200 Phaseolus vulgaris HOM05D006708 ORTHO05D008321 4.4e-06 57.0 133 33.8
RcHm_v2.0_Chr5g0060601 Rosa chinensis HOM05D007027 ORTHO05D008765 4.4e-06 57.0 165 27.9
EL10Ac3g06239 Beta vulgaris HOM05D006708 ORTHO05D008321 5.8e-06 56.6 153 32.7
A03p34980 Brassica napus HOM05D006708 ORTHO05D008321 5.8e-06 56.6 134 33.6
Carub.0003s0647 Capsella rubella HOM05D006708 ORTHO05D008321 5.8e-06 56.6 134 34.3
ATR1136G089 Amborella trichopoda HOM05D007027 ORTHO05D008765 7.5e-06 56.2 162 27.8
CAN.G855.3 Capsicum annuum HOM05D007027 ORTHO05D008765 7.5e-06 56.2 137 29.9
Eucgr.I02764 Eucalyptus grandis HOM05D007027 ORTHO05D008765 7.5e-06 56.2 137 27.7
Potri.008G206200 Populus trichocarpa HOM05D006708 ORTHO05D008321 7.5e-06 56.2 134 34.3
PGSC0003DMG400024892 Solanum tuberosum HOM05D007027 ORTHO05D008765 7.5e-06 56.2 348 25.3
TAR365G0272 Trochodendron aralioides HOM05D006708 ORTHO05D008321 7.5e-06 56.2 185 28.6
VMungo1215G1693 Vigna mungo HOM05D006708 ORTHO05D008321 7.5e-06 56.2 133 33.8
CSS0028981 Camellia sinensis var. sinensis HOM05D007027 ORTHO05D008765 9.8e-06 55.8 137 28.5
Ca_21374_v3 Cicer arietinum L. HOM05D006708 ORTHO05D008321 9.8e-06 55.8 134 35.1
FAN07G1828 Fragaria x ananassa HOM05D006708 ORTHO05D008321 9.8e-06 55.8 133 33.1
HPP92_013441 Vanilla planifolia HOM05D007027 ORTHO05D008765 9.8e-06 55.8 135 31.1


User provided reference genes

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