Gene: AT5G35400

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G35400
  • Transcript Identifier AT5G35400.1
  • Gene Type Coding gene
  • Location Chr5 : 13599416-13602240 : negative

Gene Family Information

  • ID HOM05D006401
  • #Genes/#Species 124/91
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G35400.1
  • uniprot Q8GUL5

Descriptions

  • Description Pseudouridine synthase family protein
  • Computational description Pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: pseudouridine synthesis, RNA modification; CONTAINS InterPro DOMAIN/s: Pseudouridine synthase, catalytic domain (InterPro:IPR020103), Pseudouridine synthase I, TruA, N-terminal (InterPro:IPR020094), Pseudouridine synthase I, TruA, alpha/beta domain (InterPro:IPR020097), Pseudouridine synthase I, TruA, C-terminal (InterPro:IPR020095), Pseudouridine synthase I, TruA (InterPro:IPR001406); BEST Arabidopsis thaliana protein match is: Pseudouridine synthase family protein (TAIR:AT3G06950.1); Has 7309 Blast hits to 7255 proteins in 2416 species: Archae - 105; Bacteria - 5162; Metazoa - 124; Fungi - 79; Plants - 176; Viruses - 0; Other Eukaryotes - 1663 (source: NCBI BLink).
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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001522
IEA
Gene Ontologypseudouridine synthesis
GO:0001522
IEA
InterPropseudouridine synthesis
GO:0031119
IBA
Gene OntologytRNA pseudouridine synthesis1
GO:0008033
IEA
GOA DatabasetRNA processing
GO:0009451
IEA
GOA DatabaseRNA modification
GO:0009451
IEA
InterProRNA modification

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
Gene OntologyRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0106029
IEA
Gene OntologytRNA pseudouridine synthase activity
GO:0009982
IEA
GOA Databasepseudouridine synthase activity
GO:0009982
IBA
TAS
Gene Ontologypseudouridine synthase activity1 2
GO:0009982
IEA
InterPropseudouridine synthase activity
GO:0016853
IEA
GOA Databaseisomerase activity

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0005634
ISM
Gene Ontologynucleus

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR001406 Pseudouridine synthase I, TruA
IPR020095 Pseudouridine synthase I, TruA, C-terminal
IPR020103 Pseudouridine synthase, catalytic domain superfamily
IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain
IPR020094 Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal
Mapman id Description
16.5.3.1 RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruA)