Gene: Solyc07g017250.4

General Information

Structural Information

Species Solanum lycopersicum
Gene Identifier Solyc07g017250.4
Transcript Identifier Solyc07g017250.4.1
Gene Type Coding gene
Location SL4.0ch07 : 6679967-6686752 : negative

Gene Family Information

Homologous GF
Orthologous GF

ID HOM05D006401
#Genes/#Species 124/91
Phylogenetic origin

ID ORTHO05D007864
#Genes/#Species 126/91
Phylogenetic origin

Gene Duplication Information

Tandem Duplication Tandem duplicate

Labels

Identifiers

tid Solyc07g017250.4.1
uniprot A0A3Q7H5V7
gene_id Solyc07g017250

Descriptions

Short descriptions
Ortholog descriptions

Description tRNA pseudouridine synthase (AHRD V3.3 *-* A0A328E723_9ASTE)

Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0001522	IEA	GOA Database	pseudouridine synthesis
GO:0001522	IEA	InterPro	pseudouridine synthesis
GO:0009451	IEA	GOA Database	RNA modification
GO:0009451	IEA	InterPro	RNA modification
GO:0008033	IEA	GOA Database	tRNA processing
GO:0031119	IBA	GOA Database	tRNA pseudouridine synthesis

Molecular Function

GO term	Evidence(s)	Provider(s)	Description	Source(s)
GO:0003723	IEA	GOA Database	RNA binding
GO:0003723	IEA	InterPro	RNA binding
GO:0009982	IBA IEA	GOA Database	pseudouridine synthase activity
GO:0009982	IEA	InterPro	pseudouridine synthase activity
GO:0106029	IEA	GOA Database	tRNA pseudouridine synthase activity
GO:0016853	IEA	GOA Database	isomerase activity

Color Legend

Experimental Evidence

Computational Reviewed Evidence

Electronic Evidence

InterPro	Description
IPR020103	Pseudouridine synthase, catalytic domain superfamily
IPR001406	Pseudouridine synthase I, TruA

Mapman id	Description
35.1	not assigned.annotated