Gene: Pp3c21_5420

General Information

Structural Information

  • Species Physcomitrium patens
  • Gene Identifier Pp3c21_5420
  • Transcript Identifier Pp3c21_5420V3.1
  • Gene Type Coding gene
  • Location Chr21 : 3390016-3392027 : negative

Gene Family Information

  • ID HOM05D006708
  • #Genes/#Species 120/94
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • name Pp3c21_5420V3.1
  • pacid 32915659
  • alias Phpat.021G017400
  • alias Phypa_56067
  • alias Pp1s27_246V6
  • uniprot A0A2K1IQS8

Descriptions

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Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001522
IEA
GOA Databasepseudouridine synthesis
GO:0001522
IEA
InterPropseudouridine synthesis
GO:0009451
IEA
GOA DatabaseRNA modification
GO:0009451
IEA
InterProRNA modification
GO:0008033
IEA
GOA DatabasetRNA processing
GO:0031119
IBA
GOA DatabasetRNA pseudouridine synthesis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0009982
IBA
IEA
GOA Databasepseudouridine synthase activity
GO:0009982
IEA
InterPropseudouridine synthase activity
GO:0106029
IEA
GOA DatabasetRNA pseudouridine synthase activity
GO:0016853
IEA
GOA Databaseisomerase activity

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR020103 Pseudouridine synthase, catalytic domain superfamily
IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain
IPR020095 Pseudouridine synthase I, TruA, C-terminal
IPR001406 Pseudouridine synthase I, TruA
IPR020094 Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal
Mapman id Description
16.5.3.1 RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruA)