Gene: PGSC0003DMG400024892

General Information

Structural Information

  • Species Solanum tuberosum
  • Gene Identifier PGSC0003DMG400024892
  • Transcript Identifier PGSC0003DMT400064042
  • Gene Type Coding gene
  • Location ST4.03ch01 : 80244436-80249335 : positive

Gene Family Information

  • ID HOM05D007027
  • #Genes/#Species 114/93
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • pacid 37438926
  • id PGSC0003DMG400024892.v4.03
  • uniprot M1CBM9

Descriptions

  • Description Pseudouridine synthase
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0001522
IEA
GOA Databasepseudouridine synthesis
GO:0001522
IEA
InterPropseudouridine synthesis
GO:0009451
IEA
GOA DatabaseRNA modification
GO:0009451
IEA
InterProRNA modification
GO:0008033
IEA
GOA DatabasetRNA processing
GO:0031119
IBA
GOA DatabasetRNA pseudouridine synthesis

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0003723
IEA
GOA DatabaseRNA binding
GO:0003723
IEA
InterProRNA binding
GO:0009982
IBA
IEA
GOA Databasepseudouridine synthase activity
GO:0009982
IEA
InterPropseudouridine synthase activity
GO:0106029
IEA
GOA DatabasetRNA pseudouridine synthase activity
GO:0016853
IEA
GOA Databaseisomerase activity

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain
IPR020094 Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminal
IPR020095 Pseudouridine synthase I, TruA, C-terminal
IPR001406 Pseudouridine synthase I, TruA
IPR020103 Pseudouridine synthase, catalytic domain superfamily
Mapman id Description
16.5.3.1 RNA processing.RNA modification.pseudouridylation.tRNA pseudouridine synthase (TruA)